Query 035030
Match_columns 75
No_of_seqs 128 out of 1077
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 99.8 8.5E-21 1.8E-25 134.2 3.6 57 2-58 172-228 (238)
2 PLN00026 aquaporin NIP; Provi 99.8 7.5E-21 1.6E-25 137.9 1.3 70 3-75 229-298 (298)
3 PLN00184 aquaporin NIP1; Provi 99.8 7.9E-20 1.7E-24 132.4 0.6 72 4-75 221-293 (296)
4 PLN00027 aquaporin TIP; Provis 99.7 4.5E-18 9.8E-23 120.4 2.5 59 4-62 187-245 (252)
5 PLN00166 aquaporin TIP2; Provi 99.7 1.2E-17 2.6E-22 118.4 2.4 57 4-60 185-241 (250)
6 PLN00167 aquaporin TIP5; Provi 99.7 2.6E-17 5.6E-22 117.1 2.4 59 4-62 188-246 (256)
7 PRK05420 aquaporin Z; Provisio 99.6 8.3E-17 1.8E-21 112.8 3.6 55 5-59 175-231 (231)
8 PLN00182 putative aquaporin NI 99.6 6.7E-17 1.4E-21 116.6 1.8 59 4-62 202-260 (283)
9 PLN00183 putative aquaporin NI 99.6 1.8E-16 3.9E-21 113.8 2.2 59 4-62 204-262 (274)
10 PTZ00016 aquaglyceroporin; Pro 99.6 3E-16 6.6E-21 113.4 2.5 57 4-60 228-294 (294)
11 cd00333 MIP Major intrinsic pr 99.5 6.1E-15 1.3E-19 102.3 0.5 51 4-54 175-228 (228)
12 PF00230 MIP: Major intrinsic 99.4 1.9E-14 4E-19 98.9 0.7 46 6-51 182-227 (227)
13 TIGR00861 MIP MIP family chann 99.4 2.2E-14 4.7E-19 98.9 -0.0 48 4-51 167-216 (216)
14 PLN00184 aquaporin NIP1; Provi 99.4 4.6E-14 9.9E-19 102.4 -0.8 55 3-57 101-156 (296)
15 PLN00026 aquaporin NIP; Provi 99.4 5.7E-14 1.2E-18 102.1 -0.9 57 3-59 118-175 (298)
16 COG0580 GlpF Glycerol uptake f 99.3 9.1E-13 2E-17 93.6 2.7 53 4-56 179-240 (241)
17 PLN00166 aquaporin TIP2; Provi 99.3 4E-13 8.6E-18 95.3 -0.6 55 3-57 70-125 (250)
18 PRK05420 aquaporin Z; Provisio 99.2 1.4E-12 3E-17 91.5 -0.5 55 4-58 51-106 (231)
19 PLN00183 putative aquaporin NI 99.2 1.2E-12 2.6E-17 94.1 -0.9 55 3-57 92-147 (274)
20 PLN00182 putative aquaporin NI 99.2 1.5E-12 3.3E-17 94.0 -0.5 55 3-57 89-144 (283)
21 PLN00167 aquaporin TIP5; Provi 99.2 2.4E-12 5.3E-17 91.7 0.3 55 3-57 74-129 (256)
22 TIGR00861 MIP MIP family chann 99.2 2.8E-12 6E-17 88.4 -0.7 55 4-58 49-104 (216)
23 PLN00027 aquaporin TIP; Provis 99.2 3.3E-12 7.2E-17 90.5 -0.8 55 3-57 72-127 (252)
24 PTZ00016 aquaglyceroporin; Pro 99.1 2.9E-12 6.3E-17 92.7 -1.5 54 4-57 98-152 (294)
25 COG0580 GlpF Glycerol uptake f 99.1 6.1E-12 1.3E-16 89.4 0.1 59 2-60 54-113 (241)
26 KOG0224 Aquaporin (major intri 99.1 1.5E-11 3.4E-16 89.8 1.4 57 5-61 213-280 (316)
27 cd00333 MIP Major intrinsic pr 99.1 3.9E-12 8.5E-17 88.2 -1.9 55 4-58 49-104 (228)
28 KOG0224 Aquaporin (major intri 99.1 2.2E-11 4.7E-16 89.1 -0.2 57 1-57 78-135 (316)
29 KOG0223 Aquaporin (major intri 98.9 3.4E-10 7.3E-15 80.3 1.0 56 3-58 58-114 (238)
30 PF00230 MIP: Major intrinsic 98.8 1.8E-10 3.9E-15 79.2 -3.3 54 5-58 63-117 (227)
31 COG0707 MurG UDP-N-acetylgluco 67.4 6.1 0.00013 29.5 2.8 28 4-31 3-30 (357)
32 PRK12446 undecaprenyldiphospho 64.7 5.1 0.00011 29.3 2.0 24 4-27 4-27 (352)
33 KOG3030 Lipid phosphate phosph 55.0 19 0.0004 26.9 3.5 47 14-60 212-267 (317)
34 PF08370 PDR_assoc: Plant PDR 44.1 30 0.00064 20.1 2.5 28 18-47 9-38 (65)
35 PF14034 Spore_YtrH: Sporulati 43.3 23 0.00049 22.5 2.1 46 12-57 53-101 (102)
36 PF13940 Ldr_toxin: Toxin Ldr, 40.5 37 0.0008 17.5 2.2 22 34-55 11-32 (35)
37 PF14990 DUF4516: Domain of un 38.1 20 0.00043 19.7 1.1 26 36-61 13-38 (47)
38 PF09163 Form-deh_trans: Forma 33.9 45 0.00097 18.0 2.0 22 41-62 20-41 (44)
39 COG4399 Uncharacterized protei 30.7 27 0.00059 26.8 1.1 32 31-62 2-37 (376)
40 PRK09979 putative rho operon l 29.2 21 0.00045 17.9 0.2 15 9-23 5-19 (33)
41 PF12732 YtxH: YtxH-like prote 27.1 67 0.0015 18.3 2.2 26 36-62 1-26 (74)
42 PRK14759 potassium-transportin 26.1 57 0.0012 16.2 1.5 25 34-58 3-27 (29)
43 PF03033 Glyco_transf_28: Glyc 25.1 28 0.0006 21.1 0.3 20 10-29 7-26 (139)
44 TIGR00215 lpxB lipid-A-disacch 22.1 77 0.0017 23.4 2.2 34 5-39 9-42 (385)
45 PF04286 DUF445: Protein of un 21.5 62 0.0013 22.9 1.5 23 32-54 342-364 (367)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.5e-21 Score=134.21 Aligned_cols=57 Identities=51% Similarity=0.906 Sum_probs=54.6
Q ss_pred eEEEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 2 ~~v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+.+++++++||++|||||+|||++..+.|++||+||+||++|+++++++|++++.|+
T Consensus 172 ~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 172 LNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 356788999999999999999999999999999999999999999999999999998
No 2
>PLN00026 aquaporin NIP; Provisional
Probab=99.80 E-value=7.5e-21 Score=137.91 Aligned_cols=70 Identities=79% Similarity=1.248 Sum_probs=62.5
Q ss_pred EEEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccccccCCCccccccC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAKPATASSFRR 75 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 75 (75)
.+++.+++||++|||||+|+|+++.++|+++|+||+||++|+++++++|++++.++.+.+ +|+..+||||
T Consensus 229 ~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~~---~~~~~~~~~~ 298 (298)
T PLN00026 229 NILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGD---PPRPVRSFRR 298 (298)
T ss_pred HHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCcccccc---ChhhhhhccC
Confidence 345678899999999999999999999999999999999999999999999988888765 4455789998
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=99.76 E-value=7.9e-20 Score=132.38 Aligned_cols=72 Identities=40% Similarity=0.724 Sum_probs=62.5
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc-ccccCCCccccccC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT-DALAKPATASSFRR 75 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 75 (75)
+++.+++||++|||||+|||+++.+.|+++||||+||++|+++++++|++++.++++. |...+..+.|+.|+
T Consensus 221 ~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (296)
T PLN00184 221 VLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLKTVRI 293 (296)
T ss_pred HHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchHHHhhhcc
Confidence 4567899999999999999999999999999999999999999999999999877776 55555556776664
No 4
>PLN00027 aquaporin TIP; Provisional
Probab=99.70 E-value=4.5e-18 Score=120.40 Aligned_cols=59 Identities=29% Similarity=0.584 Sum_probs=54.1
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~ 62 (75)
+++++++||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.+++.+|
T Consensus 187 ~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~~ 245 (252)
T PLN00027 187 ILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHE 245 (252)
T ss_pred HHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 45678899999999999999999999999999999999999999999999998766555
No 5
>PLN00166 aquaporin TIP2; Provisional
Probab=99.68 E-value=1.2e-17 Score=118.35 Aligned_cols=57 Identities=42% Similarity=0.803 Sum_probs=51.7
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
++.++++||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.+.+.
T Consensus 185 ~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~ 241 (250)
T PLN00166 185 ILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYA 241 (250)
T ss_pred HHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 567889999999999999999999999999999999999999999999988754444
No 6
>PLN00167 aquaporin TIP5; Provisional
Probab=99.66 E-value=2.6e-17 Score=117.06 Aligned_cols=59 Identities=37% Similarity=0.687 Sum_probs=54.8
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~ 62 (75)
++..+++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.|+.+|.
T Consensus 188 ~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~~ 246 (256)
T PLN00167 188 VLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDDR 246 (256)
T ss_pred HHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCCC
Confidence 45678899999999999999999989999999999999999999999999999988864
No 7
>PRK05420 aquaporin Z; Provisional
Probab=99.65 E-value=8.3e-17 Score=112.76 Aligned_cols=55 Identities=35% Similarity=0.668 Sum_probs=49.3
Q ss_pred EEecccCCCccChHhhHHHHhccccc--CceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~--~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
++++++||++|||||+|||+++.++| +++|+||+||++|+++++++|++++..|+
T Consensus 175 ~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~ 231 (231)
T PRK05420 175 LISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKDD 231 (231)
T ss_pred HHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccCC
Confidence 45678999999999999999998766 58999999999999999999999977654
No 8
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.63 E-value=6.7e-17 Score=116.56 Aligned_cols=59 Identities=37% Similarity=0.927 Sum_probs=53.1
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~ 62 (75)
+++.+++||++|||||+|+|+++.+.|+++|+||+||++|+++++++|++++.++++.+
T Consensus 202 ~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~~~~~~ 260 (283)
T PLN00182 202 VFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFTDKPLR 260 (283)
T ss_pred HHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 45678999999999999999999889999999999999999999999999986555543
No 9
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.61 E-value=1.8e-16 Score=113.83 Aligned_cols=59 Identities=47% Similarity=0.950 Sum_probs=54.3
Q ss_pred EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~ 62 (75)
+++.+++||++|||||+|+|++...+|+++|+||++|++|+++++++|++++.+....+
T Consensus 204 v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~ 262 (274)
T PLN00183 204 VLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCS 262 (274)
T ss_pred HHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 56788999999999999999999989999999999999999999999999998876654
No 10
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.60 E-value=3e-16 Score=113.43 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=49.7
Q ss_pred EEEecccCCCccChHhhHHHHhcc----c--ccC----ceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAV----N--NYK----AIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~----~--~~~----~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
+++.+++||++|||||+|||+++. + .|+ ++|+||+||++|+++++++|++++.||-|
T Consensus 228 ~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~~~ 294 (294)
T PTZ00016 228 GISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPLIE 294 (294)
T ss_pred HHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCCCC
Confidence 356788999999999999999986 2 454 68999999999999999999999988754
No 11
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.48 E-value=6.1e-15 Score=102.29 Aligned_cols=51 Identities=45% Similarity=0.855 Sum_probs=46.3
Q ss_pred EEEecccCCCccChHhhHHHHhcccc---cCceeeehhhhhHHHHHHHHHHHhh
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNN---YKAIWIYLTAPILGALCGAGTYSAV 54 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~---~~~~wvy~vgp~lGa~la~~~~~~l 54 (75)
++.++.+||+++||||+|++++.++. |+++|+||++|++|+++++++|+++
T Consensus 175 ~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 175 GLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred HHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 35577899999999999999999875 9999999999999999999999864
No 12
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.44 E-value=1.9e-14 Score=98.94 Aligned_cols=46 Identities=41% Similarity=0.834 Sum_probs=42.2
Q ss_pred EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHH
Q 035030 6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTY 51 (75)
Q Consensus 6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~ 51 (75)
..+..||++|||||+|+|+++.+.|+++|+||++|++|+++++++|
T Consensus 182 ~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 182 AGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 4567899999999999999999999999999999999999999987
No 13
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.42 E-value=2.2e-14 Score=98.87 Aligned_cols=48 Identities=46% Similarity=0.871 Sum_probs=43.9
Q ss_pred EEEecccCCCccChHhhHHHHhccc--ccCceeeehhhhhHHHHHHHHHH
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN--NYKAIWIYLTAPILGALCGAGTY 51 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~--~~~~~wvy~vgp~lGa~la~~~~ 51 (75)
++..+.+||+++||||+|+++++.+ +|+++|+||++|++|+++++.+|
T Consensus 167 ~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 167 HLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999987 89999999999999999998865
No 14
>PLN00184 aquaporin NIP1; Provisional
Probab=99.37 E-value=4.6e-14 Score=102.40 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=50.3
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||++|++++.++ +|...|+||++|++|+++|+++++.++..
T Consensus 101 ~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 101 LIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999887 89999999999999999999999998854
No 15
>PLN00026 aquaporin NIP; Provisional
Probab=99.36 E-value=5.7e-14 Score=102.11 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=51.3
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
.+++.+++||+|||||+++++++.++ +|..+|+||++|++|+++|+++++.++.+..
T Consensus 118 ~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~ 175 (298)
T PLN00026 118 VILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFM 175 (298)
T ss_pred HHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35668899999999999999999877 8999999999999999999999999987643
No 16
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.31 E-value=9.1e-13 Score=93.62 Aligned_cols=53 Identities=40% Similarity=0.665 Sum_probs=45.4
Q ss_pred EEEecccCCCccChHhhHHHHhccc---------ccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN---------NYKAIWIYLTAPILGALCGAGTYSAVKL 56 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~---------~~~~~wvy~vgp~lGa~la~~~~~~l~~ 56 (75)
+++.++.||..+|||||+||++... +.+|+|+||++|++|+++++++|+.++.
T Consensus 179 ~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 179 GLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred HHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 3567889999999999999999542 2258999999999999999999998764
No 17
>PLN00166 aquaporin TIP2; Provisional
Probab=99.28 E-value=4e-13 Score=95.32 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=49.1
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
++++++++||+|+||||++++++.++ +|...|+||++|++|+++++.+++.++..
T Consensus 70 ~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 70 GVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred HHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45677899999999999999999865 68889999999999999999999988754
No 18
>PRK05420 aquaporin Z; Provisional
Probab=99.22 E-value=1.4e-12 Score=91.48 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=48.4
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++|+.+.+.++.++
T Consensus 51 i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~ 106 (231)
T PRK05420 51 AYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASGK 106 (231)
T ss_pred HHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999976 899999999999999999997777776543
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.21 E-value=1.2e-12 Score=94.11 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=49.8
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||++|++++.++ .|...|+||++|++|+++|+.+++.++..
T Consensus 92 ~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 92 VVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667889999999999999999987 78999999999999999999999888765
No 20
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.21 E-value=1.5e-12 Score=93.99 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=49.7
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||+++++++.++ +|...|+||++|++|+++|+++++.++..
T Consensus 89 ~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~ 144 (283)
T PLN00182 89 MIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNV 144 (283)
T ss_pred HHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999988 89999999999999999999999888843
No 21
>PLN00167 aquaporin TIP5; Provisional
Probab=99.20 E-value=2.4e-12 Score=91.65 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=49.2
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||+++++.+.++ .|...|+||++|++|+++++.+++.++..
T Consensus 74 ~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 74 AVYIAANISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred HHHHhhcccccccCHHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45678899999999999999999876 78899999999999999999998887643
No 22
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.17 E-value=2.8e-12 Score=88.37 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=49.6
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++.++.++
T Consensus 49 ~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~ 104 (216)
T TIGR00861 49 VYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGL 104 (216)
T ss_pred HHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456778999999999999999987 899999999999999999999999888765
No 23
>PLN00027 aquaporin TIP; Provisional
Probab=99.16 E-value=3.3e-12 Score=90.53 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=47.9
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++++...
T Consensus 72 ~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 72 AVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred HHHHHcccCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567889999999999999998766 68889999999999999999999887643
No 24
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.15 E-value=2.9e-12 Score=92.74 Aligned_cols=54 Identities=33% Similarity=0.506 Sum_probs=49.0
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
+++.+++||+|+|||+++++++.++ +|...|.||++|++|+++|+.+.+.++.+
T Consensus 98 i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 98 LLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567889999999999999999988 89999999999999999999988887755
No 25
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.15 E-value=6.1e-12 Score=89.42 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=53.1
Q ss_pred eEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 2 LNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 2 ~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
+.+++.+.+||+|+|||++++.++.++ +|+....||++|++|+++|+.+...++.++..
T Consensus 54 ~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~ 113 (241)
T COG0580 54 VAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKIL 113 (241)
T ss_pred HHHHhccCcCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 457889999999999999999999988 89999999999999999999888888777544
No 26
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.5e-11 Score=89.84 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=48.0
Q ss_pred EEecccCCCccChHhhHHHHhccc----cc-------CceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVN----NY-------KAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~----~~-------~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~ 61 (75)
+..+..+|..|||||||||+++.. ++ .++|+.|++|++|+++++++|.+...-+.+.
T Consensus 213 ~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~~~ 280 (316)
T KOG0224|consen 213 MSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHIPR 280 (316)
T ss_pred HHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccCCC
Confidence 356788999999999999999941 11 4789999999999999999999998766663
No 27
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.12 E-value=3.9e-12 Score=88.24 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=49.5
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++.++.++
T Consensus 49 ~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~ 104 (228)
T cd00333 49 VYAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGL 104 (228)
T ss_pred HHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4567889999999999999999987 789999999999999999999988887664
No 28
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.2e-11 Score=89.06 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=50.7
Q ss_pred CeEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 1 MLNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 1 ~~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
|+++++++.+||+|+|||+||+..++++ .|..+.+|.++|++||++|+.....+|.+
T Consensus 78 ~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d 135 (316)
T KOG0224|consen 78 MMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYD 135 (316)
T ss_pred HHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999998 89999999999999999998877666543
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.4e-10 Score=80.35 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=51.2
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
.+++.+++||+|+|||++++..+.++ .+.....||++|++|+++|+.+.+.+..++
T Consensus 58 ~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 58 LVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred HHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 46678899999999999999999988 677899999999999999999999998885
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=98.80 E-value=1.8e-10 Score=79.15 Aligned_cols=54 Identities=31% Similarity=0.423 Sum_probs=47.4
Q ss_pred EEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+..+++||+|+|||.+++..+.++ +|.....|+++|++|+++|+.+.+.++.+.
T Consensus 63 ~~~~~iSGaH~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 63 YAFGPISGAHFNPAVTLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp HHHHHHHTSS-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred hhhhhccccccccchhhheeeeeeecccceeeEEeeccccccccccchhhcccCc
Confidence 445678999999999999999987 788999999999999999999988888773
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=67.38 E-value=6.1 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.4
Q ss_pred EEEecccCCCccChHhhHHHHhcccccC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVNNYK 31 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~~~~ 31 (75)
++.++.-||||+-||.++...+...+|.
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~ 30 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWE 30 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCcc
Confidence 4555667999999999999999988774
No 32
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=64.65 E-value=5.1 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=19.1
Q ss_pred EEEecccCCCccChHhhHHHHhcc
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAV 27 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~ 27 (75)
+++.+.=||||+.||.+++-.+-.
T Consensus 4 i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 4 IVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHh
Confidence 344555599999999999988865
No 33
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=54.96 E-value=19 Score=26.85 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=34.4
Q ss_pred ccChHhhHHHHhcc--------cccCceee-ehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 14 SMNPVRTLGPAVAV--------NNYKAIWI-YLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 14 ~lNPArs~g~av~~--------~~~~~~wv-y~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
.+.|-..|++.+.. .++++||. -++|-++|+.+|..++.+....-++
T Consensus 212 llr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~f~~ 267 (317)
T KOG3030|consen 212 LLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPNFKD 267 (317)
T ss_pred hHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcchhhc
Confidence 34566666665553 26788997 6778899999999999888766554
No 34
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=44.06 E-value=30 Score=20.07 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=18.1
Q ss_pred HhhHHHHhccc--ccCceeeehhhhhHHHHHH
Q 035030 18 VRTLGPAVAVN--NYKAIWIYLTAPILGALCG 47 (75)
Q Consensus 18 Ars~g~av~~~--~~~~~wvy~vgp~lGa~la 47 (75)
..++|.++... -+..-+-||+| +|+++|
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIg--vgaL~G 38 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIG--VGALLG 38 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeeh--HHHHHH
Confidence 47899998864 23444556665 577776
No 35
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=43.33 E-value=23 Score=22.48 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCccChHhhHHHHhcccccC---ceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 12 GGSMNPVRTLGPAVAVNNYK---AIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 12 G~~lNPArs~g~av~~~~~~---~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
|+.++|-+.+---++.++.+ ...+|++..++|+-.|..+.+.+...
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 67788888888888777554 46789999999999999888877544
No 36
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=40.49 E-value=37 Score=17.53 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=17.1
Q ss_pred eeehhhhhHHHHHHHHHHHhhc
Q 035030 34 WIYLTAPILGALCGAGTYSAVK 55 (75)
Q Consensus 34 wvy~vgp~lGa~la~~~~~~l~ 55 (75)
|==..+|.+.++++++++..+.
T Consensus 11 WhDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred HHHhHhHHHHHHHHHHHHHHHH
Confidence 4446789999999999887654
No 37
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=38.11 E-value=20 Score=19.71 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.7
Q ss_pred ehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030 36 YLTAPILGALCGAGTYSAVKLPEEDT 61 (75)
Q Consensus 36 y~vgp~lGa~la~~~~~~l~~~~~~~ 61 (75)
....-++.-+.|+-+...+++||.++
T Consensus 13 ~~~~s~~sM~aGA~vVH~~ykPdlti 38 (47)
T PF14990_consen 13 SLVASLLSMLAGASVVHNIYKPDLTI 38 (47)
T ss_pred HHHHHHHHHHhhhHHHHHHhCccCCC
Confidence 44556777788899999999998876
No 38
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=33.87 E-value=45 Score=17.99 Aligned_cols=22 Identities=5% Similarity=-0.153 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHhhcCCCcccc
Q 035030 41 ILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 41 ~lGa~la~~~~~~l~~~~~~~~ 62 (75)
+.++.+++++.+....|+..+|
T Consensus 20 ~~~~~~~~~~Hyi~vGPn~v~e 41 (44)
T PF09163_consen 20 MGATAAAGFFHYITVGPNRVEE 41 (44)
T ss_dssp HHHHHHHHHHHHHHH--B-S-S
T ss_pred HHHHHHHHHHHHhhcCCCCCCc
Confidence 4456666776777777777654
No 39
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.73 E-value=27 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=23.6
Q ss_pred CceeeehhhhhHHHHHHHH----HHHhhcCCCcccc
Q 035030 31 KAIWIYLTAPILGALCGAG----TYSAVKLPEEDTD 62 (75)
Q Consensus 31 ~~~wvy~vgp~lGa~la~~----~~~~l~~~~~~~~ 62 (75)
+..|.+++-+++||++|++ .-+.+|.|++++-
T Consensus 2 s~l~~~l~MiViGgiIG~iTN~lAIkMLFRPyk~~y 37 (376)
T COG4399 2 SALFTLLFMIVIGGIIGGITNDLAIKMLFRPYKAIY 37 (376)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHhccchhhh
Confidence 4456677778888888854 5677899998873
No 40
>PRK09979 putative rho operon leader peptide; Provisional
Probab=29.18 E-value=21 Score=17.89 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.6
Q ss_pred ccCCCccChHhhHHH
Q 035030 9 PSTGGSMNPVRTLGP 23 (75)
Q Consensus 9 ~~sG~~lNPArs~g~ 23 (75)
.++|.++||.--|.-
T Consensus 5 qisgsslnpscrfss 19 (33)
T PRK09979 5 QISGSSLNPSCRFSS 19 (33)
T ss_pred cccCCcCCccccccc
Confidence 578999999876543
No 41
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.15 E-value=67 Score=18.27 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=15.4
Q ss_pred ehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030 36 YLTAPILGALCGAGTYSAVKLPEEDTD 62 (75)
Q Consensus 36 y~vgp~lGa~la~~~~~~l~~~~~~~~ 62 (75)
|+.|=++|+++|+.+ -+++.|+...|
T Consensus 1 F~~g~l~Ga~~Ga~~-glL~aP~sG~e 26 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAA-GLLFAPKSGKE 26 (74)
T ss_pred CHHHHHHHHHHHHHH-HHHhCCCCcHH
Confidence 345566777776664 45566665544
No 42
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=26.13 E-value=57 Score=16.18 Aligned_cols=25 Identities=20% Similarity=-0.106 Sum_probs=12.8
Q ss_pred eeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 34 WIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 34 wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
|-||++-++...+.+.+...++.|+
T Consensus 3 ~~~~l~~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 3 LDYSLAGAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3456654554444444445555554
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=25.13 E-value=28 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.9
Q ss_pred cCCCccChHhhHHHHhcccc
Q 035030 10 STGGSMNPVRTLGPAVAVNN 29 (75)
Q Consensus 10 ~sG~~lNPArs~g~av~~~~ 29 (75)
=|++|+||...++-.+...+
T Consensus 7 Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHhccC
Confidence 37899999999999998643
No 44
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=22.14 E-value=77 Score=23.36 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=23.9
Q ss_pred EEecccCCCccChHhhHHHHhcccccCceeeehhh
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTA 39 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vg 39 (75)
++.+.=||||+.|| +++-.+-..+++-.|+-.-+
T Consensus 9 ~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 9 ALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred EEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 44444589999999 99999876555555555443
No 45
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=21.46 E-value=62 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=18.9
Q ss_pred ceeeehhhhhHHHHHHHHHHHhh
Q 035030 32 AIWIYLTAPILGALCGAGTYSAV 54 (75)
Q Consensus 32 ~~wvy~vgp~lGa~la~~~~~~l 54 (75)
--||=|.|-++|+++|.+.+-+.
T Consensus 342 L~~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 342 LQWIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHH
Confidence 36888999999999998877654
Done!