Query 035030
Match_columns 75
No_of_seqs 128 out of 1077
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b6o_A Aquaporin-0, lens fiber 99.7 9.6E-19 3.3E-23 123.4 2.0 56 5-60 173-228 (263)
2 3iyz_A Aquaporin-4; water tran 99.7 2E-18 6.8E-23 126.1 2.1 56 5-60 219-274 (340)
3 3gd8_A Aquaporin-4; proton exc 99.7 6.8E-18 2.3E-22 116.7 2.1 52 6-57 172-223 (223)
4 3d9s_A Aquaporin-5, AQP-5; aqu 99.7 3.2E-18 1.1E-22 121.1 -0.7 57 5-61 175-232 (266)
5 2zz9_A Aquaporin-4; water tran 99.7 4.5E-18 1.5E-22 122.4 -1.4 56 6-61 181-236 (301)
6 1j4n_A Aquaporin 1; membrane p 99.7 2.4E-17 8.3E-22 116.7 2.4 56 6-61 184-239 (271)
7 3cn5_A Aquaporin; membrane pro 99.6 1E-17 3.4E-22 120.7 -1.1 54 5-58 234-290 (304)
8 2o9g_A Aquaporin Z; integral m 99.6 2E-17 6.8E-22 114.9 -0.1 54 5-58 178-233 (234)
9 3llq_A Aquaporin Z 2; aquapori 99.6 9.6E-17 3.3E-21 113.3 -0.6 51 5-55 201-253 (256)
10 2w2e_A AQY1, aquaporin, aquapo 99.6 1.6E-16 5.4E-21 113.1 0.3 56 5-60 213-269 (279)
11 1ldf_A Glycerol uptake facilit 99.5 3.9E-16 1.3E-20 110.8 -1.4 56 5-60 192-260 (281)
12 3c02_A Aquaglyceroporin; membr 99.5 1.6E-16 5.5E-21 111.6 -3.4 56 5-60 182-247 (258)
13 2f2b_A Aquaporin AQPM; protein 99.5 2.1E-15 7.1E-20 105.2 -0.0 53 4-56 187-245 (246)
14 2b6o_A Aquaporin-0, lens fiber 99.3 2.1E-13 7.1E-18 96.1 -0.5 57 3-59 55-112 (263)
15 2zz9_A Aquaporin-4; water tran 99.1 3.9E-12 1.3E-16 91.5 -0.0 57 3-59 62-119 (301)
16 3iyz_A Aquaporin-4; water tran 99.1 1E-11 3.5E-16 90.7 2.0 58 2-59 100-158 (340)
17 3llq_A Aquaporin Z 2; aquapori 99.1 2.4E-12 8.2E-17 90.8 -1.6 54 3-56 78-132 (256)
18 2f2b_A Aquaporin AQPM; protein 99.1 4.4E-12 1.5E-16 88.3 -0.2 55 3-57 69-124 (246)
19 2o9g_A Aquaporin Z; integral m 99.1 2.1E-12 7.1E-17 89.6 -2.4 56 3-58 53-109 (234)
20 3d9s_A Aquaporin-5, AQP-5; aqu 99.1 2.3E-12 7.9E-17 91.0 -2.7 55 3-57 57-112 (266)
21 2w2e_A AQY1, aquaporin, aquapo 99.1 5.7E-12 1.9E-16 89.6 -0.8 57 3-59 99-156 (279)
22 1j4n_A Aquaporin 1; membrane p 99.1 3.3E-12 1.1E-16 90.3 -2.3 54 4-57 66-120 (271)
23 3c02_A Aquaglyceroporin; membr 99.1 2.5E-12 8.4E-17 90.3 -3.2 56 3-58 57-113 (258)
24 1ldf_A Glycerol uptake facilit 99.1 3.7E-12 1.3E-16 90.3 -3.4 56 3-58 55-111 (281)
25 3cn5_A Aquaporin; membrane pro 99.0 6.2E-12 2.1E-16 90.5 -2.6 56 3-58 111-167 (304)
26 3gd8_A Aquaporin-4; proton exc 99.0 5E-12 1.7E-16 87.2 -3.7 55 4-58 54-109 (223)
27 3s2u_A UDP-N-acetylglucosamine 69.4 1.5 5.1E-05 30.6 1.0 24 8-31 9-32 (365)
No 1
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.72 E-value=9.6e-19 Score=123.44 Aligned_cols=56 Identities=32% Similarity=0.638 Sum_probs=52.0
Q ss_pred EEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
++++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.|+.+
T Consensus 173 ~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~ 228 (263)
T 2b6o_A 173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK 228 (263)
T ss_dssp HHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 45678999999999999999999999999999999999999999999999987654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.70 E-value=2e-18 Score=126.14 Aligned_cols=56 Identities=43% Similarity=0.767 Sum_probs=52.4
Q ss_pred EEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
+.++++||++|||||+|||+++.++|+++|+||+||++|+++|+++|++++.|+.+
T Consensus 219 ~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~ 274 (340)
T 3iyz_A 219 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 274 (340)
T ss_pred HhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence 45568899999999999999999999999999999999999999999999998876
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.8e-18 Score=116.65 Aligned_cols=52 Identities=46% Similarity=0.817 Sum_probs=48.5
Q ss_pred EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.|
T Consensus 172 ~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 172 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 3456899999999999999999999999999999999999999999999876
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.67 E-value=3.2e-18 Score=121.07 Aligned_cols=57 Identities=37% Similarity=0.657 Sum_probs=51.9
Q ss_pred EEecccCCCccChHhhHHHHhcccccCc-eeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKA-IWIYLTAPILGALCGAGTYSAVKLPEEDT 61 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~~~-~wvy~vgp~lGa~la~~~~~~l~~~~~~~ 61 (75)
+.++++||++|||||||||+++.++|++ +|+||+||++|+++|+++|++++.|+.+.
T Consensus 175 ~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~~ 232 (266)
T 3d9s_A 175 LVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLS 232 (266)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred HHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCchh
Confidence 3456789999999999999999999998 99999999999999999999999886654
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.65 E-value=4.5e-18 Score=122.40 Aligned_cols=56 Identities=41% Similarity=0.736 Sum_probs=48.1
Q ss_pred EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030 6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61 (75)
Q Consensus 6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~ 61 (75)
.++++||++|||||+|||+++.++|+++|+||+||++|+++|+++|++++.|+.+.
T Consensus 181 ~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~~~ 236 (301)
T 2zz9_A 181 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVEL 236 (301)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCchhh
Confidence 34567999999999999999999999999999999999999999999999876653
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.65 E-value=2.4e-17 Score=116.68 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=51.2
Q ss_pred EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030 6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61 (75)
Q Consensus 6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~ 61 (75)
.++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.++.++
T Consensus 184 ~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~~~ 239 (271)
T 1j4n_A 184 LAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239 (271)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCSSC
T ss_pred hccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34578999999999999999999999999999999999999999999999887653
No 7
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.64 E-value=1e-17 Score=120.67 Aligned_cols=54 Identities=31% Similarity=0.528 Sum_probs=49.1
Q ss_pred EEecccCCCccChHhhHHHHhc---ccccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVA---VNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~---~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
++++++||++|||||+|||+++ .++|+++|+||+||++|+++|+++|++++.++
T Consensus 234 l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999 55899999999999999999999999998764
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.63 E-value=2e-17 Score=114.90 Aligned_cols=54 Identities=28% Similarity=0.538 Sum_probs=48.5
Q ss_pred EEecccCCCccChHhhHHHHhcccc--cCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNN--YKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~--~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
++.+++||++|||||||||+++.++ |+++|+||+||++|+++++++|++++.++
T Consensus 178 ~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~~ 233 (234)
T 2o9g_A 178 LISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233 (234)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence 4567789999999999999999875 55999999999999999999999998764
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.58 E-value=9.6e-17 Score=113.27 Aligned_cols=51 Identities=35% Similarity=0.649 Sum_probs=45.9
Q ss_pred EEecccCCCccChHhhHHHHhcccc--cCceeeehhhhhHHHHHHHHHHHhhc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNN--YKAIWIYLTAPILGALCGAGTYSAVK 55 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~--~~~~wvy~vgp~lGa~la~~~~~~l~ 55 (75)
++++++||++|||||+|||+++.++ |+++|+||+||++|+++|+++|+++.
T Consensus 201 ~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 201 LISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 4456789999999999999999874 56899999999999999999999986
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.58 E-value=1.6e-16 Score=113.11 Aligned_cols=56 Identities=38% Similarity=0.624 Sum_probs=50.3
Q ss_pred EEecccCCCccChHhhHHHHhccccc-CceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVNNY-KAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~~~-~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
++++++||++|||||||||+++.+.| +++|+||+||++|+++++++|++++..+.+
T Consensus 213 l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~ 269 (279)
T 2w2e_A 213 LICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ 269 (279)
T ss_dssp HHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 45678899999999999999999765 689999999999999999999999877766
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.53 E-value=3.9e-16 Score=110.80 Aligned_cols=56 Identities=34% Similarity=0.506 Sum_probs=47.0
Q ss_pred EEecccCCCccChHhhHHHHhccc-------ccC------ceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVN-------NYK------AIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~-------~~~------~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
++.+++||++|||||||||+++.. .|+ ++||||+||++|+++++++|++++.++.+
T Consensus 192 ~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~~~ 260 (281)
T 1ldf_A 192 ASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260 (281)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGGC-
T ss_pred HhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCccCC
Confidence 456788999999999999999851 232 79999999999999999999999876554
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.53 E-value=1.6e-16 Score=111.62 Aligned_cols=56 Identities=30% Similarity=0.482 Sum_probs=48.4
Q ss_pred EEecccCCCccChHhhHHHHhccc------cc----CceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030 5 LIAGPSTGGSMNPVRTLGPAVAVN------NY----KAIWIYLTAPILGALCGAGTYSAVKLPEED 60 (75)
Q Consensus 5 ~~~g~~sG~~lNPArs~g~av~~~------~~----~~~wvy~vgp~lGa~la~~~~~~l~~~~~~ 60 (75)
++.+++||++|||||||||+++.+ +| +++|+||+||++|+++++++|++++.++.+
T Consensus 182 ~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~~ 247 (258)
T 3c02_A 182 ITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVD 247 (258)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 456788999999999999999862 34 569999999999999999999999876554
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.49 E-value=2.1e-15 Score=105.18 Aligned_cols=53 Identities=36% Similarity=0.606 Sum_probs=45.9
Q ss_pred EEEecccCCCccChHhhHHHHhc--c----cccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVA--V----NNYKAIWIYLTAPILGALCGAGTYSAVKL 56 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~--~----~~~~~~wvy~vgp~lGa~la~~~~~~l~~ 56 (75)
+++.+++||++|||||||||++. . ..|+++|+||++|++|+++++++|++++.
T Consensus 187 ~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 187 ITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 34567889999999999999992 2 26888899999999999999999999874
No 14
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.29 E-value=2.1e-13 Score=96.13 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=51.3
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
.+++.+++||+|+|||++++.++.++ +|...|+||++|++|+++|+.+++.++.++.
T Consensus 55 ~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~ 112 (263)
T 2b6o_A 55 LVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV 112 (263)
T ss_dssp HHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHhhccCcCeeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34567899999999999999999987 8899999999999999999999999987653
No 15
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.14 E-value=3.9e-12 Score=91.45 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=51.3
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++.
T Consensus 62 ~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~ 119 (301)
T 2zz9_A 62 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV 119 (301)
T ss_dssp HHHHHGGGTCCCCSHHHHHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCG
T ss_pred hhheeccCCcceeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567889999999999999999988 8999999999999999999999999987654
No 16
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.14 E-value=1e-11 Score=90.74 Aligned_cols=58 Identities=29% Similarity=0.407 Sum_probs=52.5
Q ss_pred eEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 2 LNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 2 ~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
+++++.+++||+|+|||+||+.++.++ +|.....||++|++|+++|+.+.+.++.++.
T Consensus 100 ~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~ 158 (340)
T 3iyz_A 100 TMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV 158 (340)
T ss_pred HheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 568899999999999999999999987 7889999999999999999999888876543
No 17
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.13 E-value=2.4e-12 Score=90.76 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=49.0
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKL 56 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~ 56 (75)
++++.+++||+|+|||+|++.++.++ +|.....||++|++|+++|+.+.+.++.
T Consensus 78 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 78 MAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp HHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHheeeccccceEchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667889999999999999999987 8999999999999999999999888874
No 18
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.13 E-value=4.4e-12 Score=88.29 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=50.5
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
.+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.+
T Consensus 69 ~v~~~g~iSGaH~NPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 124 (246)
T 2f2b_A 69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124 (246)
T ss_dssp HHHHHTTTTCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhheecccccceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34567899999999999999999988 89999999999999999999999999877
No 19
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.12 E-value=2.1e-12 Score=89.58 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=50.0
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
.+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus 53 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~ 109 (234)
T 2o9g_A 53 MAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK 109 (234)
T ss_dssp HHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhccCcceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34567889999999999999999988 899999999999999999999998888654
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.10 E-value=2.3e-12 Score=91.04 Aligned_cols=55 Identities=31% Similarity=0.492 Sum_probs=49.5
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
++++.+++||+|+|||+|++..+.++ +|...+.||++|++|+++|+.+.+.++.+
T Consensus 57 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~ 112 (266)
T 3d9s_A 57 LAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPL 112 (266)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcccCcceECHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999999988 79999999999999999999999998854
No 21
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.10 E-value=5.7e-12 Score=89.61 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=50.8
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~ 59 (75)
++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++.
T Consensus 99 ~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~ 156 (279)
T 2w2e_A 99 GVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI 156 (279)
T ss_dssp HHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHhhcCccccChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 35667899999999999999999988 8999999999999999999999998886543
No 22
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.09 E-value=3.3e-12 Score=90.32 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=48.8
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP 57 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~ 57 (75)
+++.+++||+|+|||+|++..+.++ +|.....||++|++|+++|+.+.+.++.+
T Consensus 66 i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 120 (271)
T 1j4n_A 66 AQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (271)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCcceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4567889999999999999999988 89999999999999999999999888754
No 23
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.08 E-value=2.5e-12 Score=90.29 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=50.1
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
.+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus 57 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 113 (258)
T 3c02_A 57 GILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGF 113 (258)
T ss_dssp HHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHheecccCcCeeChHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 34567889999999999999999988 899999999999999999999998888653
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.05 E-value=3.7e-12 Score=90.29 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=50.0
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus 55 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 111 (281)
T 1ldf_A 55 AIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 111 (281)
T ss_dssp HHHHHHHHHCCCCSHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhheecccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999988 899999999999999999999988888654
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.04 E-value=6.2e-12 Score=90.45 Aligned_cols=56 Identities=29% Similarity=0.470 Sum_probs=50.6
Q ss_pred EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
++++.+.+||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus 111 ~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 167 (304)
T 3cn5_A 111 LVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP 167 (304)
T ss_dssp HHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred eeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45667899999999999999999988 888999999999999999999999888654
No 26
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.02 E-value=5e-12 Score=87.20 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=48.9
Q ss_pred EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030 4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE 58 (75)
Q Consensus 4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~ 58 (75)
+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus 54 v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~ 109 (223)
T 3gd8_A 54 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPS 109 (223)
T ss_dssp HHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HheecccccceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4567789999999999999999987 788999999999999999999988887543
No 27
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=69.41 E-value=1.5 Score=30.55 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.7
Q ss_pred cccCCCccChHhhHHHHhcccccC
Q 035030 8 GPSTGGSMNPVRTLGPAVAVNNYK 31 (75)
Q Consensus 8 g~~sG~~lNPArs~g~av~~~~~~ 31 (75)
+.=||||++||.+++-.+...+++
T Consensus 9 ~GGTgGHi~palala~~L~~~g~~ 32 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQARGYA 32 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCE
Confidence 333889999999999998765443
Done!