Query 035031
Match_columns 75
No_of_seqs 103 out of 1192
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.7 3.4E-16 7.4E-21 99.9 9.1 71 2-72 402-472 (485)
2 KOG0254 Predicted transporter 99.3 6.6E-12 1.4E-16 80.5 7.7 72 1-72 428-501 (513)
3 PF00083 Sugar_tr: Sugar (and 99.3 7.5E-14 1.6E-18 87.4 -2.3 69 1-69 382-451 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.2 3.7E-11 7.9E-16 76.8 5.7 66 1-67 425-501 (502)
5 PRK10077 xylE D-xylose transpo 99.1 6E-10 1.3E-14 70.3 8.8 74 1-74 397-477 (479)
6 KOG0252 Inorganic phosphate tr 98.6 5.6E-08 1.2E-12 62.6 4.0 68 1-69 439-512 (538)
7 TIGR00879 SP MFS transporter, 98.3 1.8E-06 4E-11 53.7 5.5 63 2-64 417-480 (481)
8 TIGR00898 2A0119 cation transp 98.3 2.8E-06 6.1E-11 54.3 5.6 62 1-64 443-504 (505)
9 KOG0253 Synaptic vesicle trans 98.3 1.1E-06 2.3E-11 56.1 3.5 61 1-62 467-527 (528)
10 PRK10489 enterobactin exporter 98.2 3.7E-06 8E-11 52.7 5.1 68 2-69 346-414 (417)
11 TIGR01299 synapt_SV2 synaptic 98.2 1E-05 2.3E-10 54.8 7.3 61 1-62 681-741 (742)
12 KOG0255 Synaptic vesicle trans 97.8 0.0002 4.3E-09 46.3 7.4 70 1-70 439-508 (521)
13 TIGR00880 2_A_01_02 Multidrug 97.5 0.0014 3E-08 34.4 6.9 56 2-57 85-141 (141)
14 PRK10642 proline/glycine betai 97.4 0.001 2.2E-08 42.9 6.5 61 1-62 375-437 (490)
15 PRK11273 glpT sn-glycerol-3-ph 97.1 0.0053 1.2E-07 39.2 7.7 59 2-60 381-442 (452)
16 PRK11663 regulatory protein Uh 97.1 0.0019 4.2E-08 41.0 5.4 59 2-60 371-430 (434)
17 TIGR00893 2A0114 d-galactonate 96.9 0.0056 1.2E-07 37.2 6.3 58 2-59 116-174 (399)
18 TIGR00710 efflux_Bcr_CflA drug 96.9 0.01 2.2E-07 36.5 7.3 60 2-61 127-187 (385)
19 TIGR00903 2A0129 major facilit 96.9 0.013 2.9E-07 36.8 7.9 57 2-58 112-169 (368)
20 PRK03545 putative arabinose tr 96.9 0.02 4.4E-07 35.7 8.6 58 2-59 131-189 (390)
21 PRK11102 bicyclomycin/multidru 96.8 0.012 2.7E-07 36.2 7.1 57 2-58 113-170 (377)
22 PRK10473 multidrug efflux syst 96.7 0.013 2.8E-07 36.5 6.9 59 2-60 125-184 (392)
23 PRK09705 cynX putative cyanate 96.7 0.017 3.7E-07 36.3 7.1 61 2-62 327-389 (393)
24 PRK15403 multidrug efflux syst 96.6 0.029 6.4E-07 35.6 7.9 58 2-59 138-196 (413)
25 PRK14995 methyl viologen resis 96.6 0.0084 1.8E-07 38.8 5.5 59 2-60 129-188 (495)
26 PRK10091 MFS transport protein 96.6 0.026 5.6E-07 35.2 7.4 59 2-60 125-184 (382)
27 TIGR00895 2A0115 benzoate tran 96.6 0.01 2.2E-07 36.4 5.6 58 2-59 139-197 (398)
28 TIGR00712 glpT glycerol-3-phos 96.4 0.0092 2E-07 37.9 4.9 57 2-58 379-437 (438)
29 PRK09874 drug efflux system pr 96.4 0.071 1.5E-06 33.2 8.5 57 2-58 140-197 (408)
30 PRK10213 nepI ribonucleoside t 96.4 0.052 1.1E-06 34.2 7.8 58 2-59 142-200 (394)
31 TIGR02332 HpaX 4-hydroxyphenyl 96.2 0.088 1.9E-06 33.4 8.4 58 2-59 130-194 (412)
32 TIGR00889 2A0110 nucleoside tr 96.2 0.036 7.7E-07 35.3 6.5 60 2-61 342-409 (418)
33 PRK15402 multidrug efflux syst 96.2 0.058 1.3E-06 33.8 7.3 57 3-59 136-193 (406)
34 PRK10054 putative transporter; 96.2 0.05 1.1E-06 34.3 7.0 57 2-58 130-186 (395)
35 TIGR00711 efflux_EmrB drug res 96.1 0.0096 2.1E-07 37.9 3.5 59 2-60 124-183 (485)
36 PRK11663 regulatory protein Uh 96.0 0.08 1.7E-06 33.7 7.4 56 2-57 145-201 (434)
37 TIGR00887 2A0109 phosphate:H+ 96.0 0.2 4.2E-06 32.6 9.2 25 2-26 149-173 (502)
38 PLN00028 nitrate transmembrane 95.9 0.14 3.1E-06 33.2 8.3 55 2-56 157-221 (476)
39 TIGR00901 2A0125 AmpG-related 95.8 0.17 3.7E-06 31.1 8.1 58 2-59 117-183 (356)
40 KOG2816 Predicted transporter 95.7 0.091 2E-06 34.5 6.9 63 2-64 146-209 (463)
41 PRK11646 multidrug resistance 95.5 0.18 4E-06 31.8 7.6 57 2-58 133-189 (400)
42 PRK03545 putative arabinose tr 95.5 0.15 3.3E-06 31.8 7.1 53 2-54 327-380 (390)
43 TIGR00894 2A0114euk Na(+)-depe 95.5 0.059 1.3E-06 34.4 5.3 56 2-57 165-222 (465)
44 PRK05122 major facilitator sup 95.4 0.15 3.2E-06 31.8 6.9 59 2-61 336-395 (399)
45 TIGR00712 glpT glycerol-3-phos 95.4 0.18 3.9E-06 32.1 7.4 57 2-58 152-210 (438)
46 PRK15034 nitrate/nitrite trans 95.4 0.38 8.3E-06 31.6 8.9 70 2-71 161-251 (462)
47 PRK11551 putative 3-hydroxyphe 95.4 0.076 1.6E-06 33.1 5.6 57 2-58 137-194 (406)
48 KOG2532 Permease of the major 95.3 0.39 8.4E-06 31.6 8.7 70 2-71 162-237 (466)
49 TIGR00891 2A0112 putative sial 95.2 0.35 7.5E-06 29.9 8.0 57 2-59 134-193 (405)
50 TIGR00903 2A0129 major facilit 95.2 0.14 3E-06 32.3 6.3 54 1-56 313-366 (368)
51 TIGR00897 2A0118 polyol permea 95.2 0.22 4.7E-06 31.4 7.1 51 2-52 348-399 (402)
52 TIGR00900 2A0121 H+ Antiporter 95.1 0.24 5.1E-06 30.0 7.1 57 2-58 126-184 (365)
53 PRK11652 emrD multidrug resist 95.1 0.31 6.7E-06 30.4 7.7 56 5-60 133-189 (394)
54 PF07690 MFS_1: Major Facilita 95.1 0.039 8.4E-07 33.3 3.6 58 2-59 119-177 (352)
55 TIGR00890 2A0111 Oxalate/Forma 95.0 0.069 1.5E-06 32.5 4.5 56 2-57 124-180 (377)
56 COG2814 AraJ Arabinose efflux 95.0 0.35 7.6E-06 31.3 7.6 54 2-55 135-189 (394)
57 TIGR00893 2A0114 d-galactonate 95.0 0.14 3E-06 31.2 5.7 50 2-51 345-396 (399)
58 PRK10406 alpha-ketoglutarate t 94.9 0.2 4.3E-06 31.9 6.6 60 1-62 369-430 (432)
59 PRK12382 putative transporter; 94.9 0.31 6.8E-06 30.4 7.3 53 2-54 336-389 (392)
60 PRK12307 putative sialic acid 94.5 0.17 3.6E-06 31.9 5.4 57 2-58 355-413 (426)
61 PRK15011 sugar efflux transpor 94.5 0.57 1.2E-05 29.4 7.8 55 2-57 338-393 (393)
62 TIGR00899 2A0120 sugar efflux 94.5 0.43 9.3E-06 29.3 7.1 53 7-59 128-181 (375)
63 PRK11551 putative 3-hydroxyphe 94.4 0.29 6.3E-06 30.6 6.2 51 2-52 342-394 (406)
64 TIGR00892 2A0113 monocarboxyla 94.3 0.33 7.1E-06 31.3 6.5 54 2-55 141-195 (455)
65 TIGR00792 gph sugar (Glycoside 94.3 0.8 1.7E-05 28.9 8.3 28 2-29 352-379 (437)
66 PRK11273 glpT sn-glycerol-3-ph 94.2 0.61 1.3E-05 29.9 7.5 57 2-58 154-212 (452)
67 cd06174 MFS The Major Facilita 94.2 0.24 5.2E-06 29.7 5.4 50 2-51 299-349 (352)
68 TIGR00879 SP MFS transporter, 93.9 0.61 1.3E-05 29.2 7.0 56 2-58 161-220 (481)
69 TIGR00886 2A0108 nitrite extru 93.9 0.54 1.2E-05 28.8 6.7 56 2-57 124-191 (366)
70 TIGR00881 2A0104 phosphoglycer 93.8 0.049 1.1E-06 33.1 1.9 57 2-58 117-175 (379)
71 PRK12307 putative sialic acid 93.6 0.42 9.1E-06 30.0 5.9 56 2-58 140-196 (426)
72 PRK11043 putative transporter; 93.4 1.2 2.5E-05 27.9 8.3 50 7-56 133-183 (401)
73 PRK09952 shikimate transporter 93.3 1 2.2E-05 28.9 7.3 56 2-58 377-436 (438)
74 TIGR01299 synapt_SV2 synaptic 93.2 2 4.4E-05 30.0 9.2 56 2-57 289-357 (742)
75 PRK09528 lacY galactoside perm 93.2 0.73 1.6E-05 29.1 6.5 47 10-56 358-405 (420)
76 PRK09874 drug efflux system pr 93.1 0.64 1.4E-05 28.9 6.1 55 2-56 345-400 (408)
77 PRK03893 putative sialic acid 93.1 0.16 3.4E-06 32.6 3.5 55 2-56 400-456 (496)
78 PTZ00207 hypothetical protein; 93.0 1.8 3.9E-05 29.5 8.3 56 2-57 153-208 (591)
79 PRK11010 ampG muropeptide tran 92.9 1.4 3E-05 28.9 7.6 56 2-58 141-198 (491)
80 COG2271 UhpC Sugar phosphate p 92.8 0.17 3.7E-06 33.1 3.3 61 2-62 151-217 (448)
81 PF13347 MFS_2: MFS/sugar tran 92.8 0.47 1E-05 30.2 5.3 55 2-56 138-200 (428)
82 PRK03893 putative sialic acid 92.6 0.92 2E-05 29.2 6.4 56 2-58 142-198 (496)
83 PRK09528 lacY galactoside perm 92.5 0.67 1.5E-05 29.3 5.7 53 5-57 142-194 (420)
84 PF06813 Nodulin-like: Nodulin 92.4 0.49 1.1E-05 28.7 4.8 53 2-54 129-181 (250)
85 PRK15011 sugar efflux transpor 92.4 1.8 3.8E-05 27.2 7.6 53 7-59 146-199 (393)
86 TIGR00792 gph sugar (Glycoside 92.4 0.88 1.9E-05 28.7 6.1 57 2-58 134-198 (437)
87 PRK06814 acylglycerophosphoeth 92.3 1.6 3.5E-05 31.2 7.8 57 2-58 142-198 (1140)
88 PF03825 Nuc_H_symport: Nucleo 92.3 2 4.3E-05 27.7 7.7 58 1-58 334-399 (400)
89 TIGR00899 2A0120 sugar efflux 92.3 1.5 3.3E-05 26.8 7.0 49 2-50 321-370 (375)
90 PRK09556 uhpT sugar phosphate 92.2 0.87 1.9E-05 29.3 6.0 50 2-51 383-446 (467)
91 PRK10504 putative transporter; 92.2 1.8 3.9E-05 27.8 7.3 57 2-58 132-189 (471)
92 KOG2533 Permease of the major 92.0 0.14 3.1E-06 33.9 2.3 58 2-59 168-232 (495)
93 TIGR00898 2A0119 cation transp 92.0 2.3 4.9E-05 27.5 8.2 53 2-57 214-266 (505)
94 COG2211 MelB Na+/melibiose sym 91.7 1.2 2.6E-05 29.6 6.1 53 2-54 147-207 (467)
95 KOG2504 Monocarboxylate transp 91.6 0.59 1.3E-05 31.1 4.8 54 2-55 168-222 (509)
96 TIGR00890 2A0111 Oxalate/Forma 91.6 1 2.3E-05 27.3 5.6 45 2-46 329-374 (377)
97 TIGR00892 2A0113 monocarboxyla 91.5 0.18 3.9E-06 32.5 2.3 48 2-49 367-416 (455)
98 COG2223 NarK Nitrate/nitrite t 91.3 0.91 2E-05 29.7 5.3 54 2-56 138-195 (417)
99 PRK15462 dipeptide/tripeptide 91.2 1.8 4E-05 28.8 6.7 47 2-48 136-183 (493)
100 PF03092 BT1: BT1 family; Int 90.8 0.89 1.9E-05 29.4 4.9 56 2-57 122-178 (433)
101 PRK15075 citrate-proton sympor 90.6 2.6 5.6E-05 26.9 6.9 60 1-63 364-428 (434)
102 PRK11462 putative transporter; 90.4 3.5 7.6E-05 26.8 7.8 55 2-56 144-206 (460)
103 TIGR01272 gluP glucose/galacto 90.2 1.9 4.1E-05 26.6 5.9 27 2-28 44-70 (310)
104 TIGR02718 sider_RhtX_FptX side 89.9 3.3 7.2E-05 25.9 7.6 44 14-57 143-187 (390)
105 PRK10489 enterobactin exporter 89.9 3.5 7.5E-05 26.0 8.9 56 2-58 144-200 (417)
106 PF11700 ATG22: Vacuole efflux 89.8 2.2 4.8E-05 28.2 6.2 58 3-61 415-474 (477)
107 TIGR00896 CynX cyanate transpo 89.7 3.2 7E-05 25.5 7.5 28 2-29 120-147 (355)
108 PF05977 MFS_3: Transmembrane 89.7 2.6 5.7E-05 28.2 6.5 61 1-61 340-402 (524)
109 TIGR00882 2A0105 oligosacchari 89.6 3.2 7E-05 26.0 6.6 51 7-57 136-186 (396)
110 KOG3764 Vesicular amine transp 89.2 0.24 5.2E-06 32.5 1.4 60 2-61 194-254 (464)
111 KOG0569 Permease of the major 89.2 1.9 4.2E-05 28.7 5.5 58 1-58 149-208 (485)
112 PRK11010 ampG muropeptide tran 89.2 3.2 6.9E-05 27.2 6.6 55 2-57 350-405 (491)
113 PRK10077 xylE D-xylose transpo 89.1 4.2 9.2E-05 26.0 9.0 56 2-58 154-218 (479)
114 PRK03699 putative transporter; 89.0 2.6 5.5E-05 26.5 5.9 48 2-49 129-178 (394)
115 PF01306 LacY_symp: LacY proto 88.9 2.9 6.3E-05 27.3 6.1 50 10-59 355-405 (412)
116 PRK11195 lysophospholipid tran 88.8 4.3 9.3E-05 25.7 7.3 56 2-58 122-177 (393)
117 PRK08633 2-acyl-glycerophospho 88.2 6.6 0.00014 28.2 7.9 29 2-30 137-165 (1146)
118 cd06174 MFS The Major Facilita 87.6 4.4 9.4E-05 24.3 7.0 48 2-49 121-169 (352)
119 PRK08633 2-acyl-glycerophospho 87.2 3.9 8.4E-05 29.3 6.4 55 2-56 356-412 (1146)
120 PRK15403 multidrug efflux syst 86.8 6.1 0.00013 25.2 7.9 44 2-45 345-388 (413)
121 PRK09848 glucuronide transport 86.6 6.4 0.00014 25.2 8.0 27 3-29 361-387 (448)
122 TIGR00897 2A0118 polyol permea 86.0 4.7 0.0001 25.4 5.8 28 2-29 139-167 (402)
123 PRK11128 putative 3-phenylprop 85.5 6.5 0.00014 24.6 6.2 55 2-57 126-181 (382)
124 TIGR00805 oat sodium-independe 85.2 8.2 0.00018 26.5 6.9 28 2-29 206-233 (633)
125 PRK09584 tppB putative tripept 85.1 8.7 0.00019 25.4 7.5 53 4-56 150-206 (500)
126 TIGR00924 yjdL_sub1_fam amino 85.1 8.4 0.00018 25.2 7.2 45 2-46 139-184 (475)
127 PRK10207 dipeptide/tripeptide 85.1 8.3 0.00018 25.5 6.8 37 2-38 141-178 (489)
128 PRK15402 multidrug efflux syst 85.1 6.6 0.00014 24.7 6.2 29 2-30 342-370 (406)
129 TIGR02718 sider_RhtX_FptX side 83.6 8.6 0.00019 24.1 6.8 46 2-47 338-384 (390)
130 TIGR00885 fucP L-fucose:H+ sym 82.8 10 0.00022 24.3 7.3 27 2-28 128-154 (410)
131 PRK11902 ampG muropeptide tran 82.7 9.6 0.00021 24.0 8.9 57 2-59 128-186 (402)
132 TIGR00788 fbt folate/biopterin 82.0 11 0.00024 24.7 6.4 47 11-58 165-212 (468)
133 PLN00028 nitrate transmembrane 81.6 1.1 2.5E-05 29.1 1.8 49 2-51 381-430 (476)
134 PRK03699 putative transporter; 81.1 11 0.00024 23.7 6.8 48 3-50 328-376 (394)
135 TIGR00924 yjdL_sub1_fam amino 80.4 13 0.00029 24.3 6.4 55 1-55 414-469 (475)
136 PF06609 TRI12: Fungal trichot 80.4 16 0.00035 25.2 6.8 27 31-57 194-221 (599)
137 PF10183 ESSS: ESSS subunit of 80.0 6.9 0.00015 20.7 4.2 23 42-64 69-91 (105)
138 TIGR00894 2A0114euk Na(+)-depe 79.1 2 4.3E-05 27.6 2.3 48 3-50 395-446 (465)
139 KOG0255 Synaptic vesicle trans 78.7 16 0.00034 24.0 8.6 54 2-58 205-258 (521)
140 PRK15075 citrate-proton sympor 78.6 15 0.00032 23.5 6.1 21 2-22 151-171 (434)
141 PRK06814 acylglycerophosphoeth 77.9 15 0.00032 26.6 6.4 44 2-45 368-413 (1140)
142 PRK10504 putative transporter; 77.9 13 0.00028 23.9 5.7 28 2-29 387-414 (471)
143 TIGR00883 2A0106 metabolite-pr 77.8 13 0.00029 22.6 7.1 26 2-27 130-155 (394)
144 PRK10406 alpha-ketoglutarate t 77.6 16 0.00034 23.4 7.1 56 2-58 158-222 (432)
145 PRK15034 nitrate/nitrite trans 77.6 14 0.00031 24.5 5.8 51 4-54 402-454 (462)
146 PRK11646 multidrug resistance 77.1 11 0.00024 23.9 5.2 48 2-49 331-383 (400)
147 PRK10473 multidrug efflux syst 76.4 15 0.00031 23.0 5.5 34 7-40 326-360 (392)
148 PRK11462 putative transporter; 76.3 19 0.0004 23.5 7.8 23 7-29 364-386 (460)
149 PRK09669 putative symporter Ya 76.2 18 0.00038 23.2 8.0 55 2-56 144-206 (444)
150 PRK10054 putative transporter; 76.2 17 0.00037 23.0 6.9 49 2-51 332-381 (395)
151 TIGR00788 fbt folate/biopterin 74.8 21 0.00045 23.4 7.2 28 2-29 385-412 (468)
152 PRK05122 major facilitator sup 74.6 18 0.00039 22.6 6.1 40 2-41 146-186 (399)
153 TIGR00902 2A0127 phenyl propri 74.2 19 0.00041 22.6 6.4 41 2-42 126-167 (382)
154 TIGR00806 rfc RFC reduced fola 73.6 26 0.00056 23.9 7.4 30 2-31 148-177 (511)
155 PRK09705 cynX putative cyanate 73.5 20 0.00044 22.6 8.0 44 2-45 130-175 (393)
156 PRK09556 uhpT sugar phosphate 73.2 5.1 0.00011 25.9 3.0 55 2-56 156-214 (467)
157 PRK12382 putative transporter; 73.0 20 0.00044 22.4 7.6 28 2-29 146-173 (392)
158 KOG2615 Permease of the major 72.0 8.1 0.00018 25.6 3.6 12 48-59 207-218 (451)
159 TIGR00710 efflux_Bcr_CflA drug 69.7 23 0.0005 21.7 6.7 24 2-25 333-356 (385)
160 PF00854 PTR2: POT family; In 69.4 18 0.00039 22.8 4.7 47 2-48 70-117 (372)
161 TIGR01301 GPH_sucrose GPH fami 69.2 31 0.00068 23.1 7.3 57 3-59 417-476 (477)
162 KOG2881 Predicted membrane pro 68.3 27 0.00058 21.9 7.1 20 52-71 152-172 (294)
163 PRK03633 putative MFS family t 68.2 27 0.00058 21.8 6.3 28 2-29 128-155 (381)
164 TIGR02332 HpaX 4-hydroxyphenyl 67.5 5.6 0.00012 25.3 2.3 28 2-29 367-394 (412)
165 PF04695 Pex14_N: Peroxisomal 67.5 3.1 6.7E-05 22.9 1.0 17 56-72 31-47 (136)
166 COG2271 UhpC Sugar phosphate p 67.4 4 8.6E-05 27.1 1.6 52 3-54 381-434 (448)
167 PF06570 DUF1129: Protein of u 67.3 22 0.00048 20.8 4.6 15 11-25 157-171 (206)
168 COG5336 Uncharacterized protei 67.3 18 0.00039 19.5 6.7 48 2-49 40-90 (116)
169 PF05977 MFS_3: Transmembrane 65.4 40 0.00086 22.8 6.1 43 3-45 138-181 (524)
170 PRK03633 putative MFS family t 65.3 31 0.00067 21.5 6.9 45 7-51 324-369 (381)
171 KOG1330 Sugar transporter/spin 64.4 0.21 4.6E-06 33.1 -4.5 32 33-64 188-219 (493)
172 PRK11043 putative transporter; 64.2 33 0.00071 21.5 5.9 28 2-29 329-356 (401)
173 PRK09952 shikimate transporter 63.0 38 0.00083 21.8 7.2 56 2-58 159-223 (438)
174 PRK09669 putative symporter Ya 62.3 39 0.00085 21.7 7.9 26 4-29 362-387 (444)
175 TIGR00882 2A0105 oligosacchari 60.0 41 0.00088 21.1 6.2 41 9-49 349-390 (396)
176 TIGR00891 2A0112 putative sial 59.1 25 0.00054 21.7 4.0 28 2-29 362-389 (405)
177 PF11700 ATG22: Vacuole efflux 58.6 52 0.0011 22.0 6.6 58 2-59 186-252 (477)
178 PRK10642 proline/glycine betai 58.2 50 0.0011 21.6 7.8 55 2-57 152-215 (490)
179 PRK11102 bicyclomycin/multidru 57.6 43 0.00093 20.6 6.8 13 2-14 320-332 (377)
180 PF15013 CCSMST1: CCSMST1 fami 57.4 21 0.00045 18.0 2.8 27 45-71 40-66 (77)
181 KOG0254 Predicted transporter 56.8 55 0.0012 21.7 6.5 55 2-58 176-233 (513)
182 COG2270 Permeases of the major 56.7 28 0.0006 23.3 3.9 54 4-58 377-432 (438)
183 PF06785 UPF0242: Uncharacteri 54.6 14 0.0003 23.9 2.3 37 15-51 21-58 (401)
184 TIGR00926 2A1704 Peptide:H+ sy 53.5 76 0.0016 22.3 6.9 28 2-29 122-149 (654)
185 COG2223 NarK Nitrate/nitrite t 52.7 46 0.001 22.1 4.4 50 3-52 348-399 (417)
186 KOG3098 Uncharacterized conser 52.5 59 0.0013 21.9 5.0 28 2-29 386-413 (461)
187 PRK11195 lysophospholipid tran 51.8 60 0.0013 20.6 6.6 48 2-49 328-375 (393)
188 TIGR00902 2A0127 phenyl propri 51.8 58 0.0013 20.4 7.2 48 2-49 326-374 (382)
189 TIGR01301 GPH_sucrose GPH fami 50.5 75 0.0016 21.3 6.0 26 33-58 197-222 (477)
190 PF15628 RRM_DME: RRM in Demet 49.5 16 0.00034 19.4 1.6 16 57-72 63-78 (103)
191 PRK10091 MFS transport protein 47.1 70 0.0015 20.0 7.1 48 5-52 325-374 (382)
192 KOG3626 Organic anion transpor 47.1 41 0.00089 24.1 3.8 32 31-62 319-350 (735)
193 PRK11902 ampG muropeptide tran 46.8 73 0.0016 20.1 7.8 47 5-51 340-387 (402)
194 KOG2533 Permease of the major 46.5 24 0.00052 23.8 2.6 52 10-61 410-464 (495)
195 TIGR00926 2A1704 Peptide:H+ sy 45.2 1.1E+02 0.0023 21.6 5.9 46 2-47 599-644 (654)
196 PF06379 RhaT: L-rhamnose-prot 44.9 62 0.0013 21.0 4.0 28 2-29 95-122 (344)
197 PF13974 YebO: YebO-like prote 44.7 11 0.00024 19.1 0.7 26 40-65 4-29 (80)
198 COG3817 Predicted membrane pro 44.7 79 0.0017 19.9 4.8 55 16-70 107-162 (313)
199 PF12732 YtxH: YtxH-like prote 44.3 39 0.00085 16.3 3.5 25 43-67 9-33 (74)
200 COG3104 PTR2 Dipeptide/tripept 43.1 9.7 0.00021 25.7 0.4 46 4-49 155-201 (498)
201 PF11085 YqhR: Conserved membr 42.7 69 0.0015 18.7 7.0 55 6-60 70-126 (173)
202 PF03092 BT1: BT1 family; Int 42.1 98 0.0021 20.3 8.2 27 3-29 353-379 (433)
203 KOG2325 Predicted transporter/ 40.5 1.1E+02 0.0023 20.9 4.8 23 35-57 210-232 (488)
204 COG0738 FucP Fucose permease [ 40.3 1.1E+02 0.0025 20.5 5.2 36 12-47 366-402 (422)
205 PF05915 DUF872: Eukaryotic pr 39.9 63 0.0014 17.4 5.1 34 32-65 75-112 (115)
206 COG2807 CynX Cyanate permease 39.6 1.1E+02 0.0025 20.3 5.6 47 6-52 335-383 (395)
207 PF01350 Flavi_NS4A: Flaviviru 39.5 33 0.00071 19.4 2.0 25 40-64 102-127 (144)
208 PF14117 DUF4287: Domain of un 37.3 21 0.00046 17.0 1.0 20 53-72 8-27 (61)
209 PF06461 DUF1086: Domain of Un 37.2 27 0.00059 19.7 1.5 17 51-67 64-80 (145)
210 PF04714 BCL_N: BCL7, N-termin 37.2 21 0.00045 16.5 0.9 14 55-68 7-20 (52)
211 PRK03094 hypothetical protein; 36.9 37 0.00081 17.2 1.8 20 53-72 59-78 (80)
212 COG2274 SunT ABC-type bacterio 36.5 1.6E+02 0.0035 21.1 5.6 24 44-67 304-327 (709)
213 PF05298 Bombinin: Bombinin; 35.8 12 0.00026 20.2 0.0 18 55-72 103-120 (141)
214 PF04531 Phage_holin_1: Bacter 35.5 65 0.0014 16.3 6.7 18 55-72 65-82 (84)
215 COG4811 Predicted membrane pro 35.3 67 0.0014 18.1 2.8 28 37-64 9-36 (152)
216 PF00654 Voltage_CLC: Voltage 35.2 52 0.0011 20.9 2.7 29 45-73 5-33 (355)
217 PRK10429 melibiose:sodium symp 34.7 1.3E+02 0.0029 19.6 8.6 56 2-57 141-204 (473)
218 PF03793 PASTA: PASTA domain; 33.1 56 0.0012 14.9 2.1 18 54-71 3-20 (63)
219 PHA03255 BDLF3; Provisional 33.1 1.1E+02 0.0023 18.1 3.8 29 37-65 187-217 (234)
220 PRK03612 spermidine synthase; 33.0 1.6E+02 0.0035 20.0 6.6 43 5-47 146-190 (521)
221 COG2814 AraJ Arabinose efflux 32.9 1.5E+02 0.0032 19.6 7.7 51 2-52 333-384 (394)
222 PF13334 DUF4094: Domain of un 32.7 59 0.0013 16.9 2.3 12 51-62 23-34 (95)
223 PF03698 UPF0180: Uncharacteri 32.7 46 0.00099 16.8 1.8 20 53-72 59-78 (80)
224 COG4512 AgrB Membrane protein 32.4 1.1E+02 0.0024 18.1 4.2 21 43-63 113-134 (198)
225 COG4700 Uncharacterized protei 32.3 1.2E+02 0.0026 18.5 4.3 28 31-58 26-54 (251)
226 PRK01100 putative accessory ge 32.3 1.1E+02 0.0025 18.1 5.4 18 46-63 123-141 (210)
227 PF11240 DUF3042: Protein of u 32.2 63 0.0014 15.1 2.2 14 56-69 28-41 (54)
228 PF04315 DUF462: Protein of un 31.5 24 0.00052 20.3 0.7 18 50-70 66-83 (164)
229 COG0219 CspR Predicted rRNA me 29.8 23 0.00049 20.3 0.4 17 52-68 100-116 (155)
230 KOG2504 Monocarboxylate transp 29.6 9.9 0.00021 25.5 -1.2 25 5-29 425-449 (509)
231 KOG2563 Permease of the major 29.3 1.4E+02 0.003 20.4 4.0 28 2-29 174-201 (480)
232 PF14420 Clr5: Clr5 domain 29.0 63 0.0014 14.7 1.8 16 57-72 18-33 (54)
233 PF04120 Iron_permease: Low af 27.8 1.2E+02 0.0026 16.9 4.9 31 33-64 40-70 (132)
234 COG1862 YajC Preprotein transl 27.4 1E+02 0.0023 16.1 2.7 22 49-70 21-42 (97)
235 PHA00547 hypothetical protein 27.2 1.8E+02 0.0038 18.7 5.4 37 8-44 11-48 (337)
236 PRK06531 yajC preprotein trans 27.0 1.1E+02 0.0025 16.5 2.9 14 53-66 18-31 (113)
237 KOG2678 Predicted membrane pro 26.8 1.6E+02 0.0034 18.2 3.6 19 37-55 223-241 (244)
238 PF01466 Skp1: Skp1 family, di 26.7 63 0.0014 15.8 1.7 12 58-69 44-55 (78)
239 PF11696 DUF3292: Protein of u 26.4 1.5E+02 0.0033 21.1 3.8 27 2-28 126-152 (642)
240 PF10961 DUF2763: Protein of u 26.2 1.1E+02 0.0023 15.8 3.3 26 35-60 22-47 (91)
241 cd06575 PASTA_Pbp2x-like_2 PAS 25.9 68 0.0015 13.5 2.3 18 54-71 2-19 (54)
242 PF14147 Spore_YhaL: Sporulati 25.9 84 0.0018 14.6 2.2 10 32-41 2-11 (52)
243 KOG1237 H+/oligopeptide sympor 25.8 1.8E+02 0.0039 20.2 4.1 29 1-29 491-519 (571)
244 PF11609 DUF3248: Protein of u 25.7 81 0.0017 15.1 1.8 22 51-72 34-55 (63)
245 PF07857 DUF1632: CEO family ( 25.2 1.8E+02 0.0038 18.0 4.3 25 1-25 76-100 (254)
246 PRK09584 tppB putative tripept 25.0 2.2E+02 0.0047 19.0 6.0 24 1-24 415-438 (500)
247 CHL00024 psbI photosystem II p 24.8 74 0.0016 13.5 1.6 24 39-62 9-32 (36)
248 PF13798 PCYCGC: Protein of un 24.6 58 0.0013 18.7 1.5 15 58-72 130-144 (158)
249 PF08893 DUF1839: Domain of un 24.6 38 0.00082 21.7 0.8 13 52-64 106-118 (319)
250 PF15159 PIG-Y: Phosphatidylin 24.4 1.1E+02 0.0023 15.2 2.8 14 52-65 25-38 (72)
251 PF04647 AgrB: Accessory gene 24.4 1.5E+02 0.0032 16.8 6.2 22 43-64 108-130 (185)
252 PRK02655 psbI photosystem II r 24.3 28 0.00061 14.9 0.1 24 39-62 9-32 (38)
253 PF07853 DUF1648: Protein of u 24.3 83 0.0018 13.9 2.0 17 41-57 5-21 (51)
254 PF09878 DUF2105: Predicted me 24.0 1.5E+02 0.0032 17.9 3.1 14 12-25 169-182 (212)
255 PRK13912 nuclease NucT; Provis 23.8 29 0.00063 19.8 0.2 24 34-57 7-30 (177)
256 TIGR00939 2a57 Equilibrative N 23.6 2.3E+02 0.005 18.8 4.7 17 5-21 145-161 (437)
257 smart00793 AgrB Accessory gene 23.5 1.6E+02 0.0035 17.0 5.5 21 44-64 109-130 (184)
258 PF10251 PEN-2: Presenilin enh 23.5 97 0.0021 16.2 2.1 23 39-61 18-40 (94)
259 PF02532 PsbI: Photosystem II 23.4 80 0.0017 13.4 3.7 25 38-62 8-32 (36)
260 COG1288 Predicted membrane pro 23.0 2.6E+02 0.0056 19.2 5.1 51 11-61 188-245 (481)
261 smart00740 PASTA PASTA domain. 22.9 88 0.0019 13.7 2.3 19 53-71 6-24 (66)
262 PF07662 Nucleos_tra2_C: Na+ d 22.7 1.2E+02 0.0026 18.3 2.6 13 52-64 19-31 (210)
263 PRK05886 yajC preprotein trans 21.8 1.5E+02 0.0032 15.9 3.0 14 51-64 18-31 (109)
264 COG1598 Predicted nuclease of 21.8 1.1E+02 0.0023 14.9 1.9 13 57-69 28-40 (73)
265 TIGR01598 holin_phiLC3 holin, 21.0 1.3E+02 0.0029 15.1 2.4 15 55-69 62-76 (78)
266 PF12958 DUF3847: Protein of u 21.0 99 0.0022 15.9 1.8 18 53-70 56-73 (86)
267 TIGR00739 yajC preprotein tran 20.8 1.4E+02 0.0029 15.1 2.6 15 50-64 16-30 (84)
268 cd06573 PASTA PASTA domain. Th 20.7 90 0.002 13.0 2.1 17 54-70 2-18 (53)
269 COG0282 ackA Acetate kinase [E 20.5 99 0.0022 20.5 2.1 22 51-72 248-269 (396)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.4e-16 Score=99.92 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~ 72 (75)
|+.+++++.+.||++++++.++||++.+..+.+.|++|.+.+++..+++|+++||||||+..|+.++++++
T Consensus 402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 89999999999999999999999999993334899999999999999999999999999999999998765
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.34 E-value=6.6e-12 Score=80.55 Aligned_cols=72 Identities=39% Similarity=0.579 Sum_probs=63.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHHHhhc
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSK-TGTFSIFWVICAAGVA-FVTFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~~~ 72 (75)
+|+++.+++..+||..++++.+.++.+.+... ...|++|++.+.+... ++++++|||||+++||+++.++++
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 58999999999999999999999999988443 6788888888888888 899999999999999999888655
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.31 E-value=7.5e-14 Score=87.41 Aligned_cols=69 Identities=33% Similarity=0.569 Sum_probs=63.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 69 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~ 69 (75)
+|+++.+++...+|+++++.++++|++.+ .+....++++++++.+..+++++++|||||++++|++++|
T Consensus 382 ~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 382 VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 58999999999999999999999999988 4557889999999999999999999999999999999875
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.21 E-value=3.7e-11 Score=76.80 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=55.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-h----------cchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-W----------SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQA 67 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~ 67 (75)
+|+++++++...+|+++++.++++|++.+ . +....++++++.++++.++ ++++|||||+++||+|+
T Consensus 425 ~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 425 YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 48999999999999999999999999987 2 1245788888888877665 46789999999999875
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.14 E-value=6e-10 Score=70.32 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=63.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHH------H-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhcc
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMM------E-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLS 73 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~ 73 (75)
.|+++++++...+++++++.++++|.+. + .+....|+++++.+++..+..+++.||||+++++|+++.++++.
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence 3889999999999999999999999766 2 44567788888888888888888899999999999999887764
Q ss_pred C
Q 035031 74 R 74 (75)
Q Consensus 74 ~ 74 (75)
+
T Consensus 477 ~ 477 (479)
T PRK10077 477 K 477 (479)
T ss_pred c
Confidence 3
No 6
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.61 E-value=5.6e-08 Score=62.61 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=58.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 69 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~ 69 (75)
+|+.+.+++.+++.+++.+..+.|.++.+ .+..++++++++++.++.++.+ ++||||++++||++++.
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE 512 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence 59999999999999999999999999987 2446889999999988866655 58899999999986554
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.32 E-value=1.8e-06 Score=53.74 Aligned_cols=63 Identities=37% Similarity=0.551 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
|++++++.....++++++.+.+.+.+.+ .+..+.|++++++++++.+..+++.||+|+++.+|
T Consensus 417 ~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 7889999999999999999999998887 56667788888888888888888899999988765
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=98.27 E-value=2.8e-06 Score=54.29 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=50.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
+|++++|++...+++++.+.+++.. +.+.+....++++++..+++.+.. +++|||++++++|
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 4889999999999999999999888 444555677888888877776654 4689999998765
No 9
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=56.06 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=53.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
+|+.|.|.|++++++++.+.+++. .+.+...+.+.++|++..+++.+.+.++..|||||++
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 699999999999999999999998 3333556678889999999999999999999999974
No 10
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.21 E-value=3.7e-06 Score=52.67 Aligned_cols=68 Identities=6% Similarity=-0.190 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 69 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~ 69 (75)
|+++.|+....+.++..+.+.+...+.+ .+....++.+++...+..+..+..+||+|+++.+|++++-
T Consensus 346 ~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 346 LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 7889999999999999999999999998 6667778888888777777788889999999999987553
No 11
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.20 E-value=1e-05 Score=54.82 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=49.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
.|++++|++...+++++++.+++.+.+.+.....+++++++..+++.+..+ ++|||+++.+
T Consensus 681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 681 KRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 489999999999999999999999888775455677777777777655555 5799999864
No 12
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.79 E-value=0.0002 Score=46.30 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=52.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASIT 70 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~ 70 (75)
+|+.+.+.+...+++.+.+.+++............+.+++....+....+..++|||+++++.+..++-+
T Consensus 439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 439 VRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 4889999999999999999988876555422223333367777777777778899999999877554444
No 13
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.49 E-value=0.0014 Score=34.40 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+++.++....+.++..+.+.+.+.+.+ .+..+.+++.+....+..+..++..|||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 7888999999999999999998888877 4445677777777777777777777775
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.39 E-value=0.001 Score=42.93 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=41.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
+|+++++++....++.+.+.+++..++.+ .+ ....+++..+..++..+. .+++|||+++..
T Consensus 375 ~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~~~ 437 (490)
T PRK10642 375 IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANRPL 437 (490)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCCCC
Confidence 48888998888888888888998888876 33 233444444445544444 446799987654
No 15
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.13 E-value=0.0053 Score=39.18 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHHHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH-hccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWT-ITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF-LVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~-~~pet~~~ 60 (75)
|+++.|+.....++++.+ .+.+...+.+ .+....|++.++.++++.+.... ..+|+|++
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 678888888888888766 5888888888 66667787777777777776553 33665543
No 16
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.10 E-value=0.0019 Score=40.96 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|++++++....+.++.++.+.++..+.+ .+....|...+++.++..+..+++.++.+++
T Consensus 371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 6889999999999999999999999998 6666788888888777777666666665554
No 17
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.94 E-value=0.0056 Score=37.23 Aligned_cols=58 Identities=12% Similarity=-0.055 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.++..++..+..++..||++.
T Consensus 116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 6778888888888888888888777666 555677777777777666666666777654
No 18
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.92 E-value=0.01 Score=36.48 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
|+++.++......++..+.+.+...+.+ .+....+++.++..++..+..++..||++.+.
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 6778888888888888888888887776 55566777777777777777777788876543
No 19
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.92 E-value=0.013 Score=36.78 Aligned_cols=57 Identities=16% Similarity=-0.029 Sum_probs=47.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++....+.++..+.+.+.+.+.+ .+..+.|++.+++.++..+..++++||.+
T Consensus 112 r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 112 RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7889999999999999999888888877 56567787778888888787888899864
No 20
>PRK03545 putative arabinose transporter; Provisional
Probab=96.90 E-value=0.02 Score=35.70 Aligned_cols=58 Identities=14% Similarity=-0.146 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++....+.++..+.+.+...+.+ .+..+.|++.++..++..+..++.+||.+.
T Consensus 131 r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~ 189 (390)
T PRK03545 131 KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS 189 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6788888888888888888887777766 566678888888877777776777777543
No 21
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.80 E-value=0.012 Score=36.21 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.+....+..+...+++||++
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 6778888888888888888888777776 55557777777777777777777788864
No 22
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=96.74 E-value=0.013 Score=36.47 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|+++.++......++..+.+.+...+.+ .+..+.+++.++...+..+..++++||++..
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 6677777777777777666666665555 4445677777777777777777788887644
No 23
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.68 E-value=0.017 Score=36.26 Aligned_cols=61 Identities=7% Similarity=-0.077 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
|++..++......+...+.+.+...+.+ .+ ....+.+.++..++..+..+.+.|||+++..
T Consensus 327 ~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 327 AGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4677888888888888889999988888 44 3445555566666666677788899988754
No 24
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.61 E-value=0.029 Score=35.55 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=41.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+-..+.+ .+..+.|++.++..++..+..++++||++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 138 GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 4566777777777777777777666666 455678888888877777766777899864
No 25
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.61 E-value=0.0084 Score=38.83 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|++++++......++..+.+.+-..+.+ .+..+.|++...+.++..+..++++||.+++
T Consensus 129 r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~ 188 (495)
T PRK14995 129 RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR 188 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 6788889999999999899988888877 5656788877777777777777788886543
No 26
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.57 E-value=0.026 Score=35.20 Aligned_cols=59 Identities=19% Similarity=0.075 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.++...+..+..++++||.+.+
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~ 184 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE 184 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 4556666666666666666655555555 4555777777777776666667778986543
No 27
>TIGR00895 2A0115 benzoate transport.
Probab=96.57 E-value=0.01 Score=36.36 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=43.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+.+.+.+ .+....+++.++...+.....++++||+..
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 7888999999999999999888888777 454556666666666666667777888743
No 28
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.44 E-value=0.0092 Score=37.93 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHHHHH-HHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCIN-WTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.|+....++.++ .+.+.+...+.+ .+....+.+..+..+++.+..++.+||-|
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6788888888888775 567888998888 56677888888888888888888899865
No 29
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.39 E-value=0.071 Score=33.17 Aligned_cols=57 Identities=11% Similarity=-0.062 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..++++||..
T Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5677777777777777777777777766 55566777777777777777777777753
No 30
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=96.36 E-value=0.052 Score=34.20 Aligned_cols=58 Identities=14% Similarity=-0.016 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|+++.++......++..+.+.+.+.+.+ .+..+.|++.+...++..+......||+++
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 5677888888778888888888888777 565677777776666655556666788654
No 31
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.25 E-value=0.088 Score=33.39 Aligned_cols=58 Identities=7% Similarity=-0.066 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.++..++.....++++||++.
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 6777888887777777777777666553 244577777777777766677778898864
No 32
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.20 E-value=0.036 Score=35.31 Aligned_cols=60 Identities=10% Similarity=-0.048 Sum_probs=45.8
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHH-hc------chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 2 KGLAGSLVI-FIHHCINWTITFTFHFMME-WS------KTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 2 R~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
|++++++.. ..+.++..+.+.+...+.+ .+ ....|.+.++..++..+..++++||+++.-
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 678888886 4566788888999998888 33 235677777788888888888899987653
No 33
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.17 E-value=0.058 Score=33.80 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
.++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..++..||++.
T Consensus 136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 345555555555555666666565655 455677887788877777767777898864
No 34
>PRK10054 putative transporter; Provisional
Probab=96.17 E-value=0.05 Score=34.30 Aligned_cols=57 Identities=14% Similarity=-0.073 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+.+....|++.++..++..+...+++||++
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 677788888888888888888877766655556777777777766666666677654
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.05 E-value=0.0096 Score=37.87 Aligned_cols=59 Identities=17% Similarity=0.045 Sum_probs=43.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.+...++..+...+..||++.+
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA 183 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence 6788888888888888888888777776 5556777777777777767777777876543
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=95.99 E-value=0.08 Score=33.70 Aligned_cols=56 Identities=11% Similarity=-0.006 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.++..++..+...+.+||+
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6788899888888898888888887776 5656777777766665555555666664
No 37
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=95.98 E-value=0.2 Score=32.60 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHF 26 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~ 26 (75)
|++++++......++..+...+...
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888877666665543
No 38
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.90 E-value=0.14 Score=33.16 Aligned_cols=55 Identities=9% Similarity=-0.082 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH----h------cchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME----W------SKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|++++++......++..+...+.|.+.. . +..+.|++.+++.++..+..+++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7788888877777777777666665533 1 33467777777777666655555444
No 39
>TIGR00901 2A0125 AmpG-related permease.
Probab=95.81 E-value=0.17 Score=31.08 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=39.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc--------chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|+++.++......++..+.+.+...+.. .+ ....|++.++..++.....++..||++.
T Consensus 117 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 117 LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 6778888887888888877777776665 44 4456776776666655555555688643
No 40
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=95.71 E-value=0.091 Score=34.46 Aligned_cols=63 Identities=8% Similarity=-0.041 Sum_probs=53.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
|..+.++...+-+.+..+.+.+-....+ .+...++.+-.+..++..++...++||+...+.++
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 7788888899889999898888888887 67778888888889999999999999998776554
No 41
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=95.51 E-value=0.18 Score=31.82 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=42.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+.+...+.+.+..+.|++.+...++..+...++.||.+
T Consensus 133 ~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 133 RGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 678889999999999988888888777655556777766666666555566677743
No 42
>PRK03545 putative arabinose transporter; Provisional
Probab=95.50 E-value=0.15 Score=31.84 Aligned_cols=53 Identities=8% Similarity=-0.123 Sum_probs=43.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
|++++++......++..+.+.+...+.+ .+....++..+...+++.++.+...
T Consensus 327 ~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 327 TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888888899999999999999998 7777788888888888777776655
No 43
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=95.46 E-value=0.059 Score=34.44 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++++++......++..+.+.+...+.+ . +....|++.++..++..+..+++.+|.
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 6788888888888888888888887776 3 556677777777766655555555543
No 44
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=95.42 E-value=0.15 Score=31.83 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=41.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
|+++.++......++..+.+.+...+.+ .+....+++.++..+++.+..+ ++++.+++.
T Consensus 336 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 395 (399)
T PRK05122 336 RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhccccccc
Confidence 6788888888888888888888887777 5656677777777776655554 455555543
No 45
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=95.41 E-value=0.18 Score=32.12 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+.+.....+ .+....|++.++.+++..+..++++||++
T Consensus 152 rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 152 RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 6788888777777777776666554433 34456777777777777777777777753
No 46
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.41 E-value=0.38 Score=31.65 Aligned_cols=70 Identities=7% Similarity=-0.059 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH------h-------------cchHHHHHHHHHHHHHHHHHHHhccCCC--CC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME------W-------------SKTGTFSIFWVICAAGVAFVTFLVPETK--GR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------~~~~~~~~f~~~~~~~~~~~~~~~pet~--~~ 60 (75)
|+++.++....+.++..+..++.|.+.. . +.....++++...++..+..++++++.+ ..
T Consensus 161 rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~ 240 (462)
T PRK15034 161 QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA 240 (462)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 6788888887788888888888776552 1 1233455777777777777777776643 33
Q ss_pred CHHHHHHHHhh
Q 035031 61 TLEEIQASITK 71 (75)
Q Consensus 61 ~~~~~~~~~~~ 71 (75)
+.+|..+.+++
T Consensus 241 ~~~~~~~vlk~ 251 (462)
T PRK15034 241 SIADQLPVLQR 251 (462)
T ss_pred CHHHHHHHhCC
Confidence 45554444443
No 47
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=95.38 E-value=0.076 Score=33.15 Aligned_cols=57 Identities=16% Similarity=-0.063 Sum_probs=36.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+.+...+.+ .+....|++.++..++..+....++||+.
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 6677777777666776666665544444 34445666666666666666666788864
No 48
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.39 Score=31.59 Aligned_cols=70 Identities=9% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHH-HHhc--cCC-CCCCHHHHHHHHhh
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFV-TFLV--PET-KGRTLEEIQASITK 71 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~-~~~~--pet-~~~~~~~~~~~~~~ 71 (75)
|++..++..+...+++.+.--+...+-+ .|....|+++++.+++..+.- +++- |+. +..+.+|.+..-++
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~ 237 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKG 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhc
Confidence 6677888888888888777777777776 466789999998887765543 3332 333 44566676554433
No 49
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=95.20 E-value=0.35 Score=29.85 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=35.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|+++.++......++..+.+.+...+.+ .+ ..+.+++ .+...+..++....+||++.
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~-~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI-SILPIIFALWLRKNIPEAED 193 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH-HHHHHHHHHHHHHhCCCChh
Confidence 6778888888888888888877777665 33 2334443 33333333444556788653
No 50
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=95.19 E-value=0.14 Score=32.27 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=42.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
.|++++++....+++++...+.+.+.+.. +....|.++++..+++.+.+. ..|+
T Consensus 313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 313 LHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 48999999999999999999999887773 556778888888887777654 3344
No 51
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.17 E-value=0.22 Score=31.39 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~ 52 (75)
|++++|+......+++.+.+.+...+.+ .+....+++.++..+++.+..+|
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988 67677888887777776665543
No 52
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.14 E-value=0.24 Score=30.03 Aligned_cols=57 Identities=14% Similarity=-0.051 Sum_probs=37.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHh-ccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFL-VPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~-~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..+.. .||.+
T Consensus 126 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (365)
T TIGR00900 126 LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA 184 (365)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 6778888888888888888888777776 454556666555555544443332 34443
No 53
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.14 E-value=0.31 Score=30.40 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
+.++......++..+.+.+...+.+ .+..+.|++.++...+......++.||++..
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 189 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence 3444444444444444444444444 4445667766666665555566678886543
No 54
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=95.10 E-value=0.039 Score=33.34 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+...+.+ .+..+.|++.++..++..+....+.++++.
T Consensus 119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence 6788888888888888888888777765 444567888888888777654455554443
No 55
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=95.02 E-value=0.069 Score=32.46 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+++.++......++..+...+...+.+ .+..+.|++.++..++..+..+++++|.
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 5566666666655555554444444444 4445677777777777777666666543
No 56
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.35 Score=31.28 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=40.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p 55 (75)
|++++++.....-+...+..=+=.++=+ ++....|+..+.+.++.....+..+|
T Consensus 135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6777777776666665554444444545 66678999999999999999999999
No 57
>TIGR00893 2A0114 d-galactonate transporter.
Probab=94.97 E-value=0.14 Score=31.19 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=39.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~ 51 (75)
|++++++.....+++..+.+.+.+.+.+ .+ ....+++.++..+++.+..+
T Consensus 345 ~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 345 AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988 45 45666666666666655544
No 58
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=94.94 E-value=0.2 Score=31.88 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=32.5
Q ss_pred CcchhHHHHHHHHHHH-HHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 1 MKGLAGSLVIFIHHCI-NWTITFTFHFMMEWSKTG-TFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
.|++++|++...++.. +...+++...+...+.+. .+++.++..+++.+..+ ..+++||+.
T Consensus 369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~--~l~~~~~~~ 430 (432)
T PRK10406 369 VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL--MLHRKGKGM 430 (432)
T ss_pred ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--Hhhhccccc
Confidence 4889999998876653 444555555332233333 33333444444444433 356677764
No 59
>PRK12382 putative transporter; Provisional
Probab=94.94 E-value=0.31 Score=30.37 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
|+++.++......++..+.+.+...+.+ .+....+.+.++..+++.+..+++.
T Consensus 336 ~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 336 RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 6788999999999999999999998888 6666778887777777766655443
No 60
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.52 E-value=0.17 Score=31.85 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcch-HHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKT-GTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++|+.....++++.+.+.+...+.+ .+.. ..+++..+.+........++.||+.
T Consensus 355 ~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (426)
T PRK12307 355 RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL 413 (426)
T ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence 6888999999999999999999888887 4432 2333333334444333344556643
No 61
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.52 E-value=0.57 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=37.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++++++......++..+.+.+...+.+ .+....+++-++..++ ..+.+++.|||
T Consensus 338 ~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 393 (393)
T PRK15011 338 AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV 393 (393)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence 5677888878888888999999988888 5544555544444444 44455566764
No 62
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=94.51 E-value=0.43 Score=29.26 Aligned_cols=53 Identities=9% Similarity=-0.110 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
+.....+.++..+.+.+...+.+ .+..+.|++.+...++..+..++++||.+.
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 44444445556666666665655 555677888877777777777777887543
No 63
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=94.36 E-value=0.29 Score=30.56 Aligned_cols=51 Identities=6% Similarity=-0.004 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW-SKT-GTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~f~~~~~~~~~~~~~ 52 (75)
|+++.++....+.+++.+.+.+...+.+. +.+ ..++......+.+.+..++
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999988873 333 2333333334444444443
No 64
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=94.32 E-value=0.33 Score=31.31 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=39.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p 55 (75)
|+++.++....+.++..+.+.+.+.+.+ .+..+.|++.+++.++..+..++..|
T Consensus 141 r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 141 RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788888888888888888888887777 66667888887777665554444333
No 65
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.27 E-value=0.8 Score=28.86 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
++.+.|+.+....++..+.+.+...+.+
T Consensus 352 ~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 352 EGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999988888876
No 66
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=94.17 E-value=0.61 Score=29.91 Aligned_cols=57 Identities=12% Similarity=-0.076 Sum_probs=31.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-HHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTF-HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+...+. ..+.. .+..+.|++.++...+..+..++++||+.
T Consensus 154 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 154 RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 56677776555555543332222 11212 23345677777777776666777778764
No 67
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=94.16 E-value=0.24 Score=29.69 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
|++++++....+.++..+.+.+...+.+ .+....+.+.++..+++.+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 7889999999999999999999999987 5666778777777777666543
No 68
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=93.93 E-value=0.61 Score=29.20 Aligned_cols=56 Identities=13% Similarity=-0.041 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH---HHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTF---HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+.+. ....+ .+..+.|++.+.. .+..+...+++||+.
T Consensus 161 r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~-~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 161 RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP-AGLLFLGLFFLPESP 220 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHHHHHHhcCCCCh
Confidence 67788888888888777777766 22212 3334556553333 333344556788874
No 69
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=93.92 E-value=0.54 Score=28.77 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h----------cchHHH-HHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W----------SKTGTF-SIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~-~~f~~~~~~~~~~~~~~~pet 57 (75)
|++++++......++..+...+.+.+.. . +..+.+ +..++...+..+..+.+.+|+
T Consensus 124 r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 124 QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 6777777777777777777777776654 1 223445 333444444444445555554
No 70
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=93.76 E-value=0.049 Score=33.12 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+.+. +...+.+ .+..+.|++.+++.++..+..+++.||++
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 566677777777777777773 3333433 44456677677666666666666677654
No 71
>PRK12307 putative sialic acid transporter; Provisional
Probab=93.56 E-value=0.42 Score=30.05 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+.+.+.+ .+..+.+++ .....+...+.....||++
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i-~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLLPVLLVIYIRARAPESK 196 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH-HHHHHHHHHHHHHHCCCCh
Confidence 6778888888778888887777777666 444455554 2333222233333456654
No 72
>PRK11043 putative transporter; Provisional
Probab=93.45 E-value=1.2 Score=27.92 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
+.......++..+.+.+...+.+ .+..+.+++.++..++..+..++..|+
T Consensus 133 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 133 ATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333444455556666666655 454566777766666655544443333
No 73
>PRK09952 shikimate transporter; Provisional
Probab=93.28 E-value=1 Score=28.88 Aligned_cols=56 Identities=5% Similarity=0.025 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHH-hcc--hHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHH-CINWTITFTFHFMME-WSK--TGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.+++..... +++.+.+.+...+.+ .+. ...+.+.++..+++.+.. +.++||+
T Consensus 377 r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 377 RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 6778888766654 778888888888877 322 234444444555554444 4567754
No 74
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.25 E-value=2 Score=30.05 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h------------cchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W------------SKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++.+++......++..+.+.+...+.. . ..|..++.+.++..+..++.++++||+
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555555555555555444443322221 1 123233334444444455667789998
No 75
>PRK09528 lacY galactoside permease; Reviewed
Probab=93.18 E-value=0.73 Score=29.13 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 10 IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
.....++..+.+.+...+.+ .+....|.+.++..++..++.++.+++
T Consensus 358 ~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 358 QFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777777888888887 566677777777777766666665655
No 76
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=93.12 E-value=0.64 Score=28.95 Aligned_cols=55 Identities=9% Similarity=-0.115 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|++.+++......++..+.+.+...+.+ .+....|++.++..+++.++.++..++
T Consensus 345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 345 AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888887777 566678888888888877776655433
No 77
>PRK03893 putative sialic acid transporter; Provisional
Probab=93.08 E-value=0.16 Score=32.64 Aligned_cols=55 Identities=2% Similarity=-0.080 Sum_probs=36.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH-HHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVIC-AAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~-~~~~~~~~~~~pe 56 (75)
|++++++......++..+.+.+...+.+ .+....+...++.. +...+...+..|+
T Consensus 400 ~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (496)
T PRK03893 400 RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS 456 (496)
T ss_pred hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 6788888889999999999999998887 55455554444433 3333334444454
No 78
>PTZ00207 hypothetical protein; Provisional
Probab=92.98 E-value=1.8 Score=29.50 Aligned_cols=56 Identities=4% Similarity=-0.076 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+.+.|+......+++.+.+.+.......+....+++.++...+..+..+.++++.
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 78889999999999988877777666553444567777777777666666666443
No 79
>PRK11010 ampG muropeptide transporter; Validated
Probab=92.92 E-value=1.4 Score=28.90 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ . +....|++.++..++..+..+ ++||+.
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 6788889998888888888888777776 3 455677777766666544433 578874
No 80
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=92.83 E-value=0.17 Score=33.15 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH--HHHHH-hcchHHHHHHHHHHHHHHHHHHHhc---cCCCCCCH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTF--HFMME-WSKTGTFSIFWVICAAGVAFVTFLV---PETKGRTL 62 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~---pet~~~~~ 62 (75)
|++..|+=..++++++.+.+.+. ..... .+....|++-+++.++..+++++.+ ||+.|.+.
T Consensus 151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ 217 (448)
T COG2271 151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP 217 (448)
T ss_pred cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 56666666778888888887777 44444 3445677777777777777766655 77778764
No 81
>PF13347 MFS_2: MFS/sugar transport protein
Probab=92.80 E-value=0.47 Score=30.19 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-------chHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|.+..+.-.....+++.+...+.+.+.+ .+ .....++++++..+..+.+++..+|
T Consensus 138 R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 138 RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 6777788888888888888888887776 22 2344555666666666677777788
No 82
>PRK03893 putative sialic acid transporter; Provisional
Probab=92.58 E-value=0.92 Score=29.17 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ .+..+.|++ +....+.........||++
T Consensus 142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCch
Confidence 5677788888888888888888887776 443444443 3333333333344567754
No 83
>PRK09528 lacY galactoside permease; Reviewed
Probab=92.53 E-value=0.67 Score=29.30 Aligned_cols=53 Identities=8% Similarity=-0.097 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
.++.......++..+.+.+...+.+.+....|++.++..++..+..++..||.
T Consensus 142 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 142 EYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred cchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 34445555556666677776666664555677776666666655555444443
No 84
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=92.43 E-value=0.49 Score=28.72 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=34.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
|+++.++.....-+++.+.++++..+.+........+.+....+..+...+++
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence 88899999999999999999998887764333333444444333333333334
No 85
>PRK15011 sugar efflux transporter B; Provisional
Probab=92.38 E-value=1.8 Score=27.23 Aligned_cols=53 Identities=11% Similarity=-0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
++......++..+.+.+...+.+ .+....|++.+...++..+..++++||.+.
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 44445556677777777776765 565667777777777777777777888754
No 86
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=92.38 E-value=0.88 Score=28.68 Aligned_cols=57 Identities=7% Similarity=-0.048 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++..++......++..+...+.+++.. . +....+.+.+++..+.....+++.||.+
T Consensus 134 R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 134 RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 5666777777777777777666555553 2 2224556666666666666667778764
No 87
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=92.33 E-value=1.6 Score=31.25 Aligned_cols=57 Identities=12% Similarity=-0.143 Sum_probs=39.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++|+......++..+.+.+-..+....++..+++..+...+....+.+++|+++
T Consensus 142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 142 LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 678999999999999999999888887733333333444444444455556677654
No 88
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=92.33 E-value=2 Score=27.68 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=35.4
Q ss_pred CcchhHHHHHHHH-HHHHHHHHHHHHHHHH-hcchH------HHHHHHHHHHHHHHHHHHhccCCC
Q 035031 1 MKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKTG------TFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 1 ~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~------~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
+|++++++-.... -++..+.+++...+++ .+... .+.+.++..++..+..+.+.+|+.
T Consensus 334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4788999877664 4666777888888888 55443 233344444444444444555544
No 89
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=92.27 E-value=1.5 Score=26.83 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV 50 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~ 50 (75)
|+++.++......++..+.+.+...+.+ .+....+++.++..+++.+..
T Consensus 321 ~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 321 AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 3567888888888889999999988887 555666776666666655543
No 90
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=92.21 E-value=0.87 Score=29.35 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHC-INWTITFTFHFMME-------------WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
|+++.|+.....++ +.++.+.+...+.+ .+....|+++.+..+++.+..+
T Consensus 383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 67788888888886 55788888887776 1234566666666666555443
No 91
>PRK10504 putative transporter; Provisional
Probab=92.18 E-value=1.8 Score=27.76 Aligned_cols=57 Identities=16% Similarity=-0.034 Sum_probs=38.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ .+..+.|.+......+..+......|+.+
T Consensus 132 ~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 132 YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4566777777777777777777777766 44456676666666666666666667654
No 92
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=92.01 E-value=0.14 Score=33.86 Aligned_cols=58 Identities=17% Similarity=-0.012 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|+.-+++-.+.+-+++.+.+++...+++ .+..+.|++-++++++..+++++++|+-..
T Consensus 168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 5667778888888888888888776543 244578888898999988899999988655
No 93
>TIGR00898 2A0119 cation transport protein.
Probab=91.95 E-value=2.3 Score=27.54 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+.+.++......++..+.+.+...+. ...+.+++.++..++..+.. +++||+
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 555566654444444443333322222 22355666666665554444 678986
No 94
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=91.65 E-value=1.2 Score=29.57 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcch-------HHHHHHHHHHHHHHHHHHHhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKT-------GTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~f~~~~~~~~~~~~~~~ 54 (75)
|.+-.++=.....++++++..+.+++.+ .+.. ....+++++..+...++++-.
T Consensus 147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777788888999999999999888 3221 233344444444555555443
No 95
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=91.64 E-value=0.59 Score=31.08 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=43.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p 55 (75)
|+.+.|++....-++.++.+.+..++.+ .+..+..++++.+.+-..+.....-|
T Consensus 168 R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 168 RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888888888888888888888888888 77788899988888766666666556
No 96
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=91.59 E-value=1 Score=27.31 Aligned_cols=45 Identities=4% Similarity=-0.120 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG 46 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~ 46 (75)
|+++.++......++..+.+.+...+.+ .+....+.+.+++.+++
T Consensus 329 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 329 SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 6788888888899999999998888877 55555666655555443
No 97
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=91.51 E-value=0.18 Score=32.49 Aligned_cols=48 Identities=15% Similarity=-0.018 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~ 49 (75)
|++++++......++..+.+.+...+.+ .+ ....|++.++..+++.++
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 5678888888888888888888887777 43 345666665555554443
No 98
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=91.35 E-value=0.91 Score=29.69 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc---chHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS---KTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
++.++++.. .++++..+..++.|.+.. .+ ......++....++..+..++.+-|
T Consensus 138 qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 138 QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578899999 999999999999998887 55 4566777777777777777776633
No 99
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=91.17 E-value=1.8 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVA 48 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~ 48 (75)
|.++.++.....++++++.+.+.+.+.+ .+..+.|.+.++...++.+
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999887 5655666665444444333
No 100
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.79 E-value=0.89 Score=29.44 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+.-++.+..+..+++.+...+..++.+ .+....|.+.+.+..+..+...+..+|.
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 3455666777777777777777777777 5566777777777777766677777763
No 101
>PRK15075 citrate-proton symporter; Provisional
Probab=90.58 E-value=2.6 Score=26.90 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=34.1
Q ss_pred CcchhHHHHHHHHHH-HHHHHHHHHHHHHH-hcch---HHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 035031 1 MKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKT---GTFSIFWVICAAGVAFVTFLVPETKGRTLE 63 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~---~~~~~f~~~~~~~~~~~~~~~pet~~~~~~ 63 (75)
.|+++.++....... ++.+.+.+...+.+ .+.. ..+.+++.++. ....+...+-++..+.
T Consensus 364 ~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 428 (434)
T PRK15075 364 VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCG---LIATLVLYRRRGARLQ 428 (434)
T ss_pred ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH---HHHHHHhccccchhhh
Confidence 478888887666665 47778888887777 4421 22333333322 2333455665665544
No 102
>PRK11462 putative transporter; Provisional
Probab=90.37 E-value=3.5 Score=26.82 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=32.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcc-------hHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSK-------TGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|++..++-...+.++..+.+.+.+++.+ .+. .....+++++.++....+++..+|
T Consensus 144 Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 144 RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 6778888888888888777777666655 321 123344444444444444444555
No 103
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=90.18 E-value=1.9 Score=26.55 Aligned_cols=27 Identities=4% Similarity=-0.210 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM 28 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (75)
+++.+++..+.+-+++.+.+.+...+.
T Consensus 44 ~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 44 AASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346688888999999999998888766
No 104
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=89.92 E-value=3.3 Score=25.88 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 14 HCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
.++..+.......+.+ .+....|++.++...+..+..++..||+
T Consensus 143 ~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 143 MIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444445544445555 5656788888877777666665555553
No 105
>PRK10489 enterobactin exporter EntS; Provisional
Probab=89.90 E-value=3.5 Score=26.05 Aligned_cols=56 Identities=5% Similarity=-0.084 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+...+.+ .+..+.+++.+...++. ....+.+||++
T Consensus 144 ~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 200 (417)
T PRK10489 144 LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCC
Confidence 4667777777777777777777777766 44455665544444443 33445677753
No 106
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=89.76 E-value=2.2 Score=28.19 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
+.-.|+-...++..+++.++++..+.+ .+ ....++...++.+++.+.. +.+++.|++.
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 345788899999999999999999988 33 4455555555556555554 5677777764
No 107
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=89.75 E-value=3.2 Score=25.50 Aligned_cols=28 Identities=11% Similarity=-0.135 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|++++++......++..+.+.+.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~ 147 (355)
T TIGR00896 120 VGLMTGLYSMALMGGAALAAAATVPLAQ 147 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888877777888887777777765
No 108
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=89.67 E-value=2.6 Score=28.22 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=43.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH-HHhccCCCCCC
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV-TFLVPETKGRT 61 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~-~~~~pet~~~~ 61 (75)
+|++.+|+.......+..+...+...+.+ .+....+.+-++..++..+.. .+.+++.+..+
T Consensus 340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~~d 402 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEELD 402 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 48899999999999999999999999888 666666665555444444443 34456655433
No 109
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=89.58 E-value=3.2 Score=25.99 Aligned_cols=51 Identities=6% Similarity=-0.119 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 7 SLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
+.......++..+.+.+-..+.+.+....|++.+....+..+..+...||+
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444445555555555544445556677777777766665555545554
No 110
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=0.24 Score=32.48 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
|++++|+....--++..+.+-.=..+++ .|....|++.++++++.....++-++.++..+
T Consensus 194 r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 194 RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 6777777777766666666655566777 67788999999999988887776565555554
No 111
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=89.19 E-value=1.9 Score=28.75 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 1 MKGLAGSLVIFIHHCINWTI-TFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
+||....+......++..+. ....|.+.. ...|...+.+..+..+.......++||+-
T Consensus 149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 46777677766666666666 444566654 22233333344444444455667789973
No 112
>PRK11010 ampG muropeptide transporter; Validated
Probab=89.15 E-value=3.2 Score=27.23 Aligned_cols=55 Identities=7% Similarity=-0.000 Sum_probs=36.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
+++..++.++...++..+.+.+...+.+ .+....|.+.++..+.+.+..++ ++++
T Consensus 350 ~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 350 SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 4566777777788887878778888888 55555666666666666555544 4544
No 113
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=89.13 E-value=4.2 Score=26.00 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=30.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH--------H-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++++++......++..+...+-..+. + .+..+.|++.++..++.. ...+++||+.
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~ 218 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETP 218 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence 677777776665555555433322221 1 233456665555555543 4456789974
No 114
>PRK03699 putative transporter; Provisional
Probab=89.02 E-value=2.6 Score=26.50 Aligned_cols=48 Identities=4% Similarity=-0.017 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~ 49 (75)
|++++++......+++.+.+.+...+.+ .+..+.|.+.++..++..+.
T Consensus 129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666665554 34456666666665554443
No 115
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=88.86 E-value=2.9 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 10 IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
....-++..+.+.....++| .|...+|++.+++.+...++..+.+++.|.
T Consensus 355 ~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 355 QFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 45567778888888889999 776788999998888888888887766554
No 116
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=88.81 E-value=4.3 Score=25.66 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=33.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++......++..+.+.+-..+.+......+.+.+...++ .....+.+||.+
T Consensus 122 ~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~ 177 (393)
T PRK11195 122 LVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLL-AALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCc
Confidence 67788888888888888888877777764322233322222222 234456778754
No 117
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=88.23 E-value=6.6 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW 30 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (75)
|++++++......++..+.+.+...+...
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888777766653
No 118
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=87.56 E-value=4.4 Score=24.25 Aligned_cols=48 Identities=13% Similarity=-0.104 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~ 49 (75)
|++++++......++..+.+.+...+.+ .+..+.+++.+...++..+.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888887776 44445555555555444433
No 119
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=87.20 E-value=3.9 Score=29.27 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|++++|+....+.++..+.+.+...+... +....+++.+.+.++..++.....|+
T Consensus 356 rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1146)
T PRK08633 356 LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPD 412 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78888888888888776655554433322 22234444444444444444444444
No 120
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=86.82 E-value=6.1 Score=25.19 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=29.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAA 45 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 45 (75)
++++.++.....+....+.+....++...+....+...+....+
T Consensus 345 ~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 345 KGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV 388 (413)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 56777788888888888877777777665555556555444433
No 121
>PRK09848 glucuronide transporter; Provisional
Probab=86.58 E-value=6.4 Score=25.21 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
+...|+.+....++..+.+.+...+.+
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888887777766654
No 122
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=85.98 E-value=4.7 Score=25.41 Aligned_cols=28 Identities=4% Similarity=-0.227 Sum_probs=15.7
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINW-TITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 29 (75)
|++++|+......++.. ..+.+...+.+
T Consensus 139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67778887777666542 33333333333
No 123
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=85.50 E-value=6.5 Score=24.60 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|+++.+.....+.++..+.+.+-..+.+ .+....|++.++...+. ....+..||+
T Consensus 126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~ 181 (382)
T PRK11128 126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTI 181 (382)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCC
Confidence 3445566666666777777777777776 45556666555443333 2333445664
No 124
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=85.20 E-value=8.2 Score=26.45 Aligned_cols=28 Identities=11% Similarity=-0.187 Sum_probs=18.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|+...++......++..+...+-..+.+
T Consensus 206 ~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 206 SPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5677777777777666666655555443
No 125
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=85.15 E-value=8.7 Score=25.38 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH---HHHHHhccC
Q 035031 4 LAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV---AFVTFLVPE 56 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~---~~~~~~~pe 56 (75)
.+.++......++..+.+.+.+.+.+ .+..+.|++-++...++. ++...+++|
T Consensus 150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 45677778889999999999998887 565566666554333332 333444554
No 126
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=85.12 E-value=8.4 Score=25.23 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG 46 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~ 46 (75)
|+++.++.....+++..+.+.+.+.+.+ .+....|.+.++..+++
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 5668888889999999999999998887 45556666555444443
No 127
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=85.12 E-value=8.3 Score=25.47 Aligned_cols=37 Identities=8% Similarity=-0.052 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSI 38 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 38 (75)
|+.+.++......+++++.+.+.|.+.+ .+.++.|++
T Consensus 141 ~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 141 LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3557888888999999999999998888 554455555
No 128
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=85.09 E-value=6.6 Score=24.68 Aligned_cols=29 Identities=10% Similarity=-0.175 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW 30 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (75)
|++..++....+.++..+.+.+...+.+.
T Consensus 342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 342 KGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 67788888888888888888877777663
No 129
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=83.57 E-value=8.6 Score=24.06 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV 47 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~ 47 (75)
|++++++.++...++..+.+.+...+.+ .+....|+..++..+++.
T Consensus 338 ~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 338 AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4677888888889999999999888888 554566665555544443
No 130
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=82.79 E-value=10 Score=24.31 Aligned_cols=27 Identities=4% Similarity=-0.213 Sum_probs=20.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM 28 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (75)
|++.+++....+.+++.+.+.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 128 ATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877664
No 131
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=82.74 E-value=9.6 Score=24.02 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|+++.++....+.++..+.+.+...+.+ . +....|++.++..++... ..++.||++.
T Consensus 128 r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~ 186 (402)
T PRK11902 128 RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPEV 186 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCcc
Confidence 6777888887777777777777666666 3 445667766666555433 3456777643
No 132
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=81.96 E-value=11 Score=24.67 Aligned_cols=47 Identities=13% Similarity=-0.060 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 11 FIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
....++..+.+.+...+.+ .+....|++.++..++. .....++||.+
T Consensus 165 ~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 165 GASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 3334566666666666666 46666777777776666 44567788875
No 133
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=81.56 E-value=1.1 Score=29.06 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
|+.+.++....+.+++.+.++++. ... .+....|++.++..+++.+..+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 566677776666667766666543 111 2234667777777776655543
No 134
>PRK03699 putative transporter; Provisional
Probab=81.09 E-value=11 Score=23.66 Aligned_cols=48 Identities=2% Similarity=-0.137 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV 50 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~ 50 (75)
++..+.......++..+.+.+...+.+ .+....++..++...+..+.+
T Consensus 328 ~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 328 PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 455667777777888888888888887 666667776666666655443
No 135
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=80.40 E-value=13 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=34.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p 55 (75)
.|++.+|+.....-+++.+.+.+.....+ .+..+.|...++..++..+..++..|
T Consensus 414 ~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888877878777777765554 33344555555555555454444333
No 136
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=80.37 E-value=16 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH-HhccCC
Q 035031 31 SKTGTFSIFWVICAAGVAFVT-FLVPET 57 (75)
Q Consensus 31 ~~~~~~~~f~~~~~~~~~~~~-~~~pet 57 (75)
+..|.|++++++..++++.++ ++-|.+
T Consensus 194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 194 GWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345788888887777666533 334443
No 137
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=80.02 E-value=6.9 Score=20.65 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccCCCCCCHHH
Q 035031 42 ICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 42 ~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
++++...+.+.+.|||.-.+-.+
T Consensus 69 ~~~v~~~~~~~y~PD~~i~~WA~ 91 (105)
T PF10183_consen 69 GSLVFGGVFLAYKPDTSIQTWAR 91 (105)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Confidence 33444444555789999877654
No 138
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=79.12 E-value=2 Score=27.58 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh---c-chHHHHHHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMMEW---S-KTGTFSIFWVICAAGVAFV 50 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~f~~~~~~~~~~~ 50 (75)
+.++++....+.++.++.+.+...+.+. + ....|.+.++..+++.++.
T Consensus 395 g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 395 GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 4555666666666666666666655441 1 2345555555566555443
No 139
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=78.75 E-value=16 Score=24.00 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+.++.+ ....|....+.+-...++.. +..+.+++-.+.+.+..++ ++..||++
T Consensus 205 R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 205 RGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 6666667 66777777666666665554 2234555555555544444 45555874
No 140
>PRK15075 citrate-proton symporter; Provisional
Probab=78.58 E-value=15 Score=23.54 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=13.8
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITF 22 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~ 22 (75)
|++++++....++++..+.+.
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 778888877766665544333
No 141
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=77.94 E-value=15 Score=26.64 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAA 45 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~ 45 (75)
|++++|+....+.++..+.+.+...+.+ .+....+++.+...++
T Consensus 368 ~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 368 RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 6888899999988888888888777764 2333444444433333
No 142
>PRK10504 putative transporter; Provisional
Probab=77.88 E-value=13 Score=23.88 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|+.+.++.+....++..+.+.+...+.+
T Consensus 387 ~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 387 ASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888777666
No 143
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=77.81 E-value=13 Score=22.65 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFM 27 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (75)
|++..++......++..+.+.+.+.+
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777766665544
No 144
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=77.59 E-value=16 Score=23.37 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH---------HhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM---------EWSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+++.++.......+..+...+.+.+. ..+....|++-++..++. .+....+||++
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~ 222 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS 222 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 555666554444444444443333222 134345565544444433 33344578764
No 145
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=77.56 E-value=14 Score=24.53 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhc
Q 035031 4 LAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
...|+....+-.+.|+.+.++....+ .+ ....++.|.+..++..+..|++-
T Consensus 402 ~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 402 AALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777788888888877776 23 44567777777777777777654
No 146
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=77.12 E-value=11 Score=23.86 Aligned_cols=48 Identities=4% Similarity=-0.130 Sum_probs=32.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWS-----KTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~ 49 (75)
|++++++......++..+.+.+...+.+.. ....++..+...++..+.
T Consensus 331 ~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 331 RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 788889999888899999999988888732 233444444444444433
No 147
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=76.39 E-value=15 Score=22.99 Aligned_cols=34 Identities=0% Similarity=-0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Q 035031 7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFW 40 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~ 40 (75)
+.+.....+...+.+.+.+.+.+ .+......+.+
T Consensus 326 g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 326 GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 44445555565666666666665 44333333333
No 148
>PRK11462 putative transporter; Provisional
Probab=76.27 E-value=19 Score=23.53 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035031 7 SLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
+.....+.++..+.+.+...+.+
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33347777777777776666554
No 149
>PRK09669 putative symporter YagG; Provisional
Probab=76.20 E-value=18 Score=23.24 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcc-------hHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSK-------TGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|.+..++......++..+.+.+.+++.. .+. ...+.+++++..+....+++..+|
T Consensus 144 R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 144 RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 5556667777777777777666555554 221 123444555555554445554444
No 150
>PRK10054 putative transporter; Provisional
Probab=76.16 E-value=17 Score=23.02 Aligned_cols=49 Identities=10% Similarity=-0.093 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
|+++.+.. ...+++..+.+.+...+.+ .+....|++.+....+..++..
T Consensus 332 ~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 332 KASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred ceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 44555543 3677888999999999988 5555566665555554444443
No 151
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=74.79 E-value=21 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
+++..++..+...++..+.+.+-..+.+
T Consensus 385 egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 385 ESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888877776666
No 152
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=74.61 E-value=18 Score=22.59 Aligned_cols=40 Identities=8% Similarity=-0.256 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWV 41 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~ 41 (75)
|++++++......++..+.+.+-..+.+ .+....+++...
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 186 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIML 186 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5667777666666666666666666665 443344443333
No 153
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=74.20 E-value=19 Score=22.59 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVI 42 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~ 42 (75)
|+++.+......-++..+.+.+...+.+ .+....|++....
T Consensus 126 ~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 126 FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 3555666666666777777776666666 4555555554433
No 154
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=73.63 E-value=26 Score=23.90 Aligned_cols=30 Identities=3% Similarity=-0.187 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWS 31 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (75)
|+++.|+..+...++.++.+.+.+.+...+
T Consensus 148 R~ratsi~~sg~~vG~~Ia~~L~qll~s~g 177 (511)
T TIGR00806 148 YQRAAAYSRAAVLLGVFLSSVLGQLLVTLG 177 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999988855443
No 155
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=73.47 E-value=20 Score=22.61 Aligned_cols=44 Identities=7% Similarity=-0.175 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAA 45 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~ 45 (75)
|++++++.....-.+..+.+.+.|.+.+ . +....+..++...++
T Consensus 130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 130 TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6777888777777777788888887776 2 223444444444433
No 156
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=73.24 E-value=5.1 Score=25.90 Aligned_cols=55 Identities=9% Similarity=-0.135 Sum_probs=28.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h---cchHHHHHHHHHHHHHHHHHHHhccC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W---SKTGTFSIFWVICAAGVAFVTFLVPE 56 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~f~~~~~~~~~~~~~~~pe 56 (75)
|++++++......++..+.+.+.....+ . +....|.+.+...++..+..+++.+|
T Consensus 156 rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 156 RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556666655555666665555544443 1 12344555566665555555555443
No 157
>PRK12382 putative transporter; Provisional
Probab=72.95 E-value=20 Score=22.37 Aligned_cols=28 Identities=7% Similarity=-0.329 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|++++++......++..+.+.+...+.+
T Consensus 146 r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 146 SGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888777777777777777666665
No 158
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=72.02 E-value=8.1 Score=25.63 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=8.3
Q ss_pred HHHHHhccCCCC
Q 035031 48 AFVTFLVPETKG 59 (75)
Q Consensus 48 ~~~~~~~pet~~ 59 (75)
.+..+++|||-.
T Consensus 207 ~~~~~~lpETL~ 218 (451)
T KOG2615|consen 207 TFFPWFLPETLP 218 (451)
T ss_pred HHHHHhCCcccc
Confidence 345678999943
No 159
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=69.69 E-value=23 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFH 25 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~ 25 (75)
|+++.++.....+..+.+...+..
T Consensus 333 ~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 333 AGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776666666655
No 160
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=69.39 E-value=18 Score=22.76 Aligned_cols=47 Identities=4% Similarity=-0.142 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVA 48 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~ 48 (75)
|.++..+...+-++++++.....+++.+ .+....|.+-++..+++.+
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~ 117 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALI 117 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHH
Confidence 3455667788888899998889999987 4544555554444554444
No 161
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=69.22 E-value=31 Score=23.07 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
+..+|+-+.+--+-..+++.....+.+ .+ ....+.+-++..+++.+.+++.+|.++.
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 334555555555555566655555444 33 2355666667778888888998999875
No 162
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=68.35 E-value=27 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=11.5
Q ss_pred HhccCCCC-CCHHHHHHHHhh
Q 035031 52 FLVPETKG-RTLEEIQASITK 71 (75)
Q Consensus 52 ~~~pet~~-~~~~~~~~~~~~ 71 (75)
+-++|.++ ..++|.+++.++
T Consensus 152 ~~~~~~~~~eE~eEVe~el~~ 172 (294)
T KOG2881|consen 152 WEMSPSEGQEELEEVEAELAK 172 (294)
T ss_pred hcCCCccchhhHHHHHHHHHh
Confidence 34667677 455666655543
No 163
>PRK03633 putative MFS family transporter protein; Provisional
Probab=68.21 E-value=27 Score=21.84 Aligned_cols=28 Identities=4% Similarity=-0.157 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|++++++......++..+.+.+...+.+
T Consensus 128 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 128 RGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5677777777777777777777766654
No 164
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=67.53 E-value=5.6 Score=25.32 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|+++.|+.....++++++.+.+.+.+.+
T Consensus 367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~ 394 (412)
T TIGR02332 367 RAIAIAVINATGNIGSALSPFLIGILKD 394 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 5677788888888888888877777776
No 165
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=67.50 E-value=3.1 Score=22.91 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHhhc
Q 035031 56 ETKGRTLEEIQASITKL 72 (75)
Q Consensus 56 et~~~~~~~~~~~~~~~ 72 (75)
|.||.+.+||++.+++.
T Consensus 31 ~sKGLt~~EI~~al~~a 47 (136)
T PF04695_consen 31 ESKGLTEEEIDEALGRA 47 (136)
T ss_dssp HHCT--HHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHhc
Confidence 56899999998877543
No 166
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=67.41 E-value=4 Score=27.09 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhc
Q 035031 3 GLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
+++.|+...++.+ ++.........+.+ .+..+.|+++.+..+++.+......
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777 66666666666666 4656778777777777666544433
No 167
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=67.28 E-value=22 Score=20.81 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 035031 11 FIHHCINWTITFTFH 25 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~ 25 (75)
.+.|+..+..+.+.|
T Consensus 157 ~~~w~~~~~~~~~lp 171 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLP 171 (206)
T ss_pred HHHHHHHHHHHHHcc
Confidence 333433333333333
No 168
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.26 E-value=18 Score=19.53 Aligned_cols=48 Identities=8% Similarity=0.179 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-h--cchHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-W--SKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~f~~~~~~~~~~ 49 (75)
|+.++++-.+.-.+...++...+.++.+ + ..+|..++|-.+.+.+.++
T Consensus 40 k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 40 KGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4667788888889999999999999998 2 3456666666655554444
No 169
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=65.37 E-value=40 Score=22.82 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA 45 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~ 45 (75)
+.+.++.+....+...+.+-+-..++. .+....|.+=+...++
T Consensus 138 ~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~ 181 (524)
T PF05977_consen 138 PAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI 181 (524)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888777777776 5555666554443333
No 170
>PRK03633 putative MFS family transporter protein; Provisional
Probab=65.25 E-value=31 Score=21.54 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
+.......++..+.+.+...+.+ .+..+.|.+.+...++..+..+
T Consensus 324 ~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 324 QALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 33344566777788888877777 5556667666666655544433
No 171
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=64.37 E-value=0.21 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 33 TGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 33 ~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
.+.|..-++++++..+.+.++++|++.+..+|
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 45677778888888888889999987544443
No 172
>PRK11043 putative transporter; Provisional
Probab=64.22 E-value=33 Score=21.49 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|++++++....+...+...+.+...+.+
T Consensus 329 ~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 329 TGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6778888888888888888888777765
No 173
>PRK09952 shikimate transporter; Provisional
Probab=62.96 E-value=38 Score=21.79 Aligned_cols=56 Identities=16% Similarity=-0.016 Sum_probs=26.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME---------WSKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|++..+......-++..+...+...+.. .+....|++.++..++ ..+....+||++
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 5555555555444444444333332221 2334566555444333 233444577864
No 174
>PRK09669 putative symporter YagG; Provisional
Probab=62.33 E-value=39 Score=21.70 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 4 LAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
...|+.+....++..+.+.+...+.+
T Consensus 362 ~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 362 LVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777887777777776665
No 175
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=59.97 E-value=41 Score=21.12 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHH
Q 035031 9 VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~ 49 (75)
......+++.+.+.+...+.+ .+....|.+.+++.++....
T Consensus 349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888 56667777777666655544
No 176
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=59.09 E-value=25 Score=21.66 Aligned_cols=28 Identities=0% Similarity=-0.130 Sum_probs=18.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|++++|+......++..+.+.+...+.+
T Consensus 362 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 362 RAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666665
No 177
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=58.65 E-value=52 Score=21.97 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=35.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--hc-------chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME--WS-------KTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++..+...+.+.+++.+...+.-.+.. .. ....+.+-+++-++..+-.++++||.++
T Consensus 186 ~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 186 RGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3666777777788877776665544433 11 1344555555555555556677888754
No 178
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=58.24 E-value=50 Score=21.62 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH--------H-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++..++.....-++..+...+.+.+. . ++..+.|++.+...++ ..+....+||+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es 215 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET 215 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 666666665544444444333332221 1 3444566554433333 33344568886
No 179
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=57.62 E-value=43 Score=20.64 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=6.0
Q ss_pred cchhHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHH 14 (75)
Q Consensus 2 R~~~~~~~~~~~~ 14 (75)
|+++.++......
T Consensus 320 ~g~~~~~~~~~~~ 332 (377)
T PRK11102 320 AGTASSLAGTLRF 332 (377)
T ss_pred chHHHHHHHHHHH
Confidence 3445555444433
No 180
>PF15013 CCSMST1: CCSMST1 family
Probab=57.40 E-value=21 Score=17.97 Aligned_cols=27 Identities=4% Similarity=0.040 Sum_probs=14.7
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHhh
Q 035031 45 AGVAFVTFLVPETKGRTLEEIQASITK 71 (75)
Q Consensus 45 ~~~~~~~~~~pet~~~~~~~~~~~~~~ 71 (75)
+.++.+||++-...+.-.+.+++.+.+
T Consensus 40 l~~fliyFC~lReEnDiD~~L~~~L~e 66 (77)
T PF15013_consen 40 LAAFLIYFCFLREENDIDRWLDKNLYE 66 (77)
T ss_pred HHHHHHHHhhccccccHHHHHHhhHHh
Confidence 344556666655555555555555433
No 181
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=56.79 E-value=55 Score=21.66 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW---SKTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
|+.-.+....... .+....++....... +....+.+..+.+++..+. .+++||+.
T Consensus 176 RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 176 RGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 5554554444444 333333443333321 2223444445555555555 77889863
No 182
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=56.72 E-value=28 Score=23.29 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 4 LAGSLVIFIHHCINWTITFTFHFMMEWS--KTGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
...|+....++..++..++++..+.+.. ....+.....+..++. ..+..+|+.+
T Consensus 377 ~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~~ 432 (438)
T COG2270 377 RFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVPG 432 (438)
T ss_pred ceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEeecCCC
Confidence 4467788899999999999999888732 2333333333333333 3344566653
No 183
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.57 E-value=14 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 15 CINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
+..++.++++-+..+ ....+.+++|++++.++..+..
T Consensus 21 ~~~~llp~~~~pfls~~qk~y~~f~f~~iss~gwff~i 58 (401)
T PF06785_consen 21 VAAFLLPLVCYPFLSDSQKNYGYFVFSIISSLGWFFAI 58 (401)
T ss_pred HHHHHHHHhHhhhcCHHHHhcceeehHHHHHhHHHHHh
Confidence 344555555444444 4445677888888887766544
No 184
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=53.50 E-value=76 Score=22.27 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|.+...+......+++++.+.+.+++.+
T Consensus 122 ~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 122 RSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888999999999998875
No 185
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=52.66 E-value=46 Score=22.14 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~ 52 (75)
+...++....+.++.+..+..+....+ -+ ....|+++....+++.+..+.
T Consensus 348 G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999998888 33 456788888887777776554
No 186
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.52 E-value=59 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|..+.++..+-+-+.+++..+.+|....
T Consensus 386 ~~~~fsi~kfyq~~~s~v~~f~~~~~~l 413 (461)
T KOG3098|consen 386 RAQAFSLFKFYQSVASCVAFFFSPYLLL 413 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 5567777777778888888887776553
No 187
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=51.84 E-value=60 Score=20.58 Aligned_cols=48 Identities=8% Similarity=-0.019 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 49 (75)
|+++.++......++..+...++..+...+....+.+.++..+..+..
T Consensus 328 ~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 328 AGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 466777888888888877777777554455555555544433444443
No 188
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=51.79 E-value=58 Score=20.42 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=31.3
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVI-FIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 2 R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 49 (75)
|++++++.. ....++..+.+.+-..+.+..+...|++.+.+.+++.+.
T Consensus 326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456677654 344567777888888888833456777777777655443
No 189
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=50.49 E-value=75 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031 33 TGTFSIFWVICAAGVAFVTFLVPETK 58 (75)
Q Consensus 33 ~~~~~~f~~~~~~~~~~~~~~~pet~ 58 (75)
...|++-++..++....+.++.+|..
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 34566666666777777788888864
No 190
>PF15628 RRM_DME: RRM in Demeter
Probab=49.49 E-value=16 Score=19.39 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHhhc
Q 035031 57 TKGRTLEEIQASITKL 72 (75)
Q Consensus 57 t~~~~~~~~~~~~~~~ 72 (75)
+||.+.+|+++.|.++
T Consensus 63 frGls~~eIq~cF~~G 78 (103)
T PF15628_consen 63 FRGLSREEIQQCFWKG 78 (103)
T ss_pred hcccCHHHHHHHHhcC
Confidence 5899999999988654
No 191
>PRK10091 MFS transport protein AraJ; Provisional
Probab=47.14 E-value=70 Score=20.02 Aligned_cols=48 Identities=4% Similarity=-0.203 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHH
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~ 52 (75)
+.+.+.....+++.+.+.+...+.+ .. ....+.+-++.+.........
T Consensus 325 ~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 325 GAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 3334456677888888888888877 33 334454444444444443333
No 192
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.07 E-value=41 Score=24.06 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 31 SKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 31 ~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
|.||.-++.++...+...+.+++.|.+..++.
T Consensus 319 GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 319 GAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 44555555544444444455666777766543
No 193
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=46.84 E-value=73 Score=20.11 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
..++....+.++..+...+...+.+ .+....|.+.+.+++++.+..+
T Consensus 340 ~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 340 QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566555666667777 6666677777766666655543
No 194
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=46.52 E-value=24 Score=23.75 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHH-HHHHHHHHHhccCCCCCC
Q 035031 10 IFIHHCINWTITFTFHFMME--WSKTGTFSIFWVIC-AAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~-~~~~~~~~~~~pet~~~~ 61 (75)
.......+.+.++++..... +...+.+.+..+.+ ......+..+.-|.+++.
T Consensus 410 i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~~~~~~~v~~~~~~~~n~k 464 (495)
T KOG2533|consen 410 IDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACVGIVLLLVILFYKERENKK 464 (495)
T ss_pred hcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555566554443 34445553333332 223333334444444443
No 195
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=45.20 E-value=1.1e+02 Score=21.58 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGV 47 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 47 (75)
|+.+.++-....-++++++..+.+.-..-..+..|..|+++.++-.
T Consensus 599 ks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (654)
T TIGR00926 599 KSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVM 644 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666653332234566777766655433
No 196
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=44.90 E-value=62 Score=21.01 Aligned_cols=28 Identities=14% Similarity=-0.079 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|=.++|+.....-..+.+..-+.|++++
T Consensus 95 ryLGvSLG~sI~lGl~~~~GTlippi~~ 122 (344)
T PF06379_consen 95 RYLGVSLGQSIALGLCAVFGTLIPPIFQ 122 (344)
T ss_pred HHHhHHHHHHHHHHHHHHHhhchHHHHc
Confidence 5567777777777777777777777764
No 197
>PF13974 YebO: YebO-like protein
Probab=44.73 E-value=11 Score=19.08 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCHHHH
Q 035031 40 WVICAAGVAFVTFLVPETKGRTLEEI 65 (75)
Q Consensus 40 ~~~~~~~~~~~~~~~pet~~~~~~~~ 65 (75)
+++.++..+.+|||+-.-.-|+.+++
T Consensus 4 ~~~~~lv~livWFFVnRaSvRANEQI 29 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRASVRANEQI 29 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455555667888866666666655
No 198
>COG3817 Predicted membrane protein [Function unknown]
Probab=44.71 E-value=79 Score=19.93 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q 035031 16 INWTITFTFHFMMEW-SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASIT 70 (75)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~ 70 (75)
.+.+.++++|.+-.. .....+.-.++-++++.+...+-..+|.+....|-++..+
T Consensus 107 ~tlig~~lf~~~s~~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl~d 162 (313)
T COG3817 107 LTLIGSLLFPDLSFFDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEARRLMD 162 (313)
T ss_pred HHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 344555666644331 2244555566666777776665566776666666555443
No 199
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=44.28 E-value=39 Score=16.33 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHH
Q 035031 43 CAAGVAFVTFLVPETKGRTLEEIQA 67 (75)
Q Consensus 43 ~~~~~~~~~~~~pet~~~~~~~~~~ 67 (75)
.+++.+..+++-|+.-..+.+++.+
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~ 33 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKD 33 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3556666778889865555555443
No 200
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=43.06 E-value=9.7 Score=25.72 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHH
Q 035031 4 LAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF 49 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~ 49 (75)
.+.++-...-++++++.+.+.+++.+ .+....|..-++-+..+.+.
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 34444445556889999999998888 55445555555555555443
No 201
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=42.67 E-value=69 Score=18.70 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH-HhccCCCCC
Q 035031 6 GSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT-FLVPETKGR 60 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~-~~~pet~~~ 60 (75)
.-++..+--+.+++..+++-.+.. ..+.|+-.+|++.-.....++. ...|.++..
T Consensus 70 ~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~ 126 (173)
T PF11085_consen 70 NLIGIVFIGVFSIVAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIFPMIKPV 126 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcccccCChhh
Confidence 344455556667777777777776 5667777788766543333322 234555433
No 202
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=42.13 E-value=98 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
++..++-.+..+++..+...+--.+.+
T Consensus 353 gt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 353 GTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555554
No 203
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=40.47 E-value=1.1e+02 Score=20.94 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 035031 35 TFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 35 ~~~~f~~~~~~~~~~~~~~~pet 57 (75)
+-|+..+.+++..++..+++.|-
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 45666777788888888777764
No 204
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=40.27 E-value=1.1e+02 Score=20.47 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Q 035031 12 IHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV 47 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~ 47 (75)
+.-+++.++|.+...+.| .+....+......|.+..
T Consensus 366 maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 366 MAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344567778888887777 554445554444444443
No 205
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.86 E-value=63 Score=17.42 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHH----HHHhccCCCCCCHHHH
Q 035031 32 KTGTFSIFWVICAAGVAF----VTFLVPETKGRTLEEI 65 (75)
Q Consensus 32 ~~~~~~~f~~~~~~~~~~----~~~~~pet~~~~~~~~ 65 (75)
..+.+++.++++++-..+ .+.....=+|-+.+++
T Consensus 75 ~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 75 RGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred ccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 356777888877775444 3444566677777664
No 206
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=39.60 E-value=1.1e+02 Score=20.27 Aligned_cols=47 Identities=6% Similarity=-0.018 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcch-HHHHHHHHHHHHHHHHHHH
Q 035031 6 GSLVIFIHHCINWTITFTFHFMME-WSKT-GTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~f~~~~~~~~~~~~~ 52 (75)
.+++...+.+.+...++++.++.| .+.+ .....+....++..+..+.
T Consensus 335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999 4433 3444455555555555444
No 207
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=39.47 E-value=33 Score=19.40 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhccCC-CCCCHHH
Q 035031 40 WVICAAGVAFVTFLVPET-KGRTLEE 64 (75)
Q Consensus 40 ~~~~~~~~~~~~~~~pet-~~~~~~~ 64 (75)
++..++.+++.....||+ |.||..|
T Consensus 102 Ag~~lv~filmvVLiPEpg~QRS~~D 127 (144)
T PF01350_consen 102 AGVLLVFFILMVVLIPEPGKQRSQQD 127 (144)
T ss_pred HHHHHHHHHHHHhcccCCCCcCCccc
Confidence 445555666666667886 4555554
No 208
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=37.26 E-value=21 Score=17.04 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=15.0
Q ss_pred hccCCCCCCHHHHHHHHhhc
Q 035031 53 LVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 53 ~~pet~~~~~~~~~~~~~~~ 72 (75)
-+|+.-|++++|..+..+++
T Consensus 8 ~Ie~kTGk~~~~W~~~~~~~ 27 (61)
T PF14117_consen 8 NIEKKTGKTLDEWLALAREG 27 (61)
T ss_pred HhHHHHCcCHHHHHHHHHHh
Confidence 36778899999887776554
No 209
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=37.20 E-value=27 Score=19.73 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=14.3
Q ss_pred HHhccCCCCCCHHHHHH
Q 035031 51 TFLVPETKGRTLEEIQA 67 (75)
Q Consensus 51 ~~~~pet~~~~~~~~~~ 67 (75)
-+++|+.++++.+|+++
T Consensus 64 ~w~~~~Lr~Ks~~ei~a 80 (145)
T PF06461_consen 64 KWFVPRLRGKSEKEIRA 80 (145)
T ss_pred hHHhhhhccccHHHHHH
Confidence 36789999999999875
No 210
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=37.17 E-value=21 Score=16.50 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.0
Q ss_pred cCCCCCCHHHHHHH
Q 035031 55 PETKGRTLEEIQAS 68 (75)
Q Consensus 55 pet~~~~~~~~~~~ 68 (75)
-||++++.+|+.+.
T Consensus 7 aETRsr~KddiKrv 20 (52)
T PF04714_consen 7 AETRSRAKDDIKRV 20 (52)
T ss_pred hhhhcchhHHHHHH
Confidence 48999998887653
No 211
>PRK03094 hypothetical protein; Provisional
Probab=36.88 E-value=37 Score=17.19 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=15.8
Q ss_pred hccCCCCCCHHHHHHHHhhc
Q 035031 53 LVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 53 ~~pet~~~~~~~~~~~~~~~ 72 (75)
.+.+-.|+|.+|+.+..+++
T Consensus 59 pVI~A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 59 SVITASGLTADEICQQVESR 78 (80)
T ss_pred cEEEcCCCCHHHHHHHHHHh
Confidence 45677899999998887754
No 212
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=36.48 E-value=1.6e+02 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=13.5
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHH
Q 035031 44 AAGVAFVTFLVPETKGRTLEEIQA 67 (75)
Q Consensus 44 ~~~~~~~~~~~pet~~~~~~~~~~ 67 (75)
.+..+..+.+.|-+|.++.+.+++
T Consensus 304 ~l~~l~~~~~~~~l~~~~~~~~~~ 327 (709)
T COG2274 304 PLNVLITLIFQPLLRRKTRKLIEE 327 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455567777777665543
No 213
>PF05298 Bombinin: Bombinin; InterPro: IPR007962 This family consists of Bombinin and Maximin proteins from Bombina maxima (Giant fire-bellied toad). Two groups of antimicrobial peptides have been isolated from skin secretions of B. maxima. Peptides in the first group, named maximins 1, 2, 3, 4 and 5, are structurally related to bombinin-like peptides (BLPs). Unlike BLPs, sequence variations in maximins occurred all through the molecules. In addition to the potent antimicrobial activity, cytotoxicity against tumour cells and spermicidal action of maximins, maximin 3 possessed a significant anti-Simian-Human immunodeficiency virus (HIV) activity. Maximins 1 and 3 have been found to be toxic to mice. Peptides in the second group, termed maximins H1, H2, H3 and H4, are homologous with bombinin H peptides [].; GO: 0042742 defense response to bacterium, 0005576 extracellular region; PDB: 2AP7_A.
Probab=35.80 E-value=12 Score=20.23 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHhhc
Q 035031 55 PETKGRTLEEIQASITKL 72 (75)
Q Consensus 55 pet~~~~~~~~~~~~~~~ 72 (75)
.||+|.+.+|+...|.++
T Consensus 103 retrgfnqeeianlftkk 120 (141)
T PF05298_consen 103 RETRGFNQEEIANLFTKK 120 (141)
T ss_dssp ------------------
T ss_pred HHhcCCChhhhhhhhhhh
Confidence 356666666666555433
No 214
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.53 E-value=65 Score=16.27 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=12.9
Q ss_pred cCCCCCCHHHHHHHHhhc
Q 035031 55 PETKGRTLEEIQASITKL 72 (75)
Q Consensus 55 pet~~~~~~~~~~~~~~~ 72 (75)
|.|+|.+..+....+++.
T Consensus 65 PTT~G~sDS~~al~y~~P 82 (84)
T PF04531_consen 65 PTTKGISDSEQALTYKKP 82 (84)
T ss_pred CCCCCCCcHHHHHhccCC
Confidence 889999987755555443
No 215
>COG4811 Predicted membrane protein [Function unknown]
Probab=35.25 E-value=67 Score=18.08 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 37 SIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 37 ~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
.++.+..++.+++--+.+|.-||+|+-.
T Consensus 9 ~l~i~~~LlYa~Ydqfimp~~kGkTlL~ 36 (152)
T COG4811 9 ILFIALLLLYAIYDQFIMPRRKGKTLLS 36 (152)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCEEEE
Confidence 3444555666677778999999998643
No 216
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=35.22 E-value=52 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHhhcc
Q 035031 45 AGVAFVTFLVPETKGRTLEEIQASITKLS 73 (75)
Q Consensus 45 ~~~~~~~~~~pet~~~~~~~~~~~~~~~~ 73 (75)
+......++.|+.+|...+|+.+..++++
T Consensus 5 ~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~ 33 (355)
T PF00654_consen 5 LSGLLWKKFAPEAAGSGIPEVKAALRGKS 33 (355)
T ss_dssp HHHHHHHHC-GGGSB-SHHHHHHHCTTSS
T ss_pred EeeHHHHHHCCccCCCCHHHHHHHHhCCC
Confidence 33344555569999999999888776554
No 217
>PRK10429 melibiose:sodium symporter; Provisional
Probab=34.66 E-value=1.3e+02 Score=19.62 Aligned_cols=56 Identities=5% Similarity=-0.127 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcc-------hHHHHHHHHHHHHHHHHHHHhccCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSK-------TGTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
|++..++-.....+++.+++.+.+++.. .+. .....+++++..+....+++..+|.
T Consensus 141 R~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 141 REQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 4444555444444444555444443333 221 1233344444444445555556664
No 218
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=33.11 E-value=56 Score=14.87 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=13.7
Q ss_pred ccCCCCCCHHHHHHHHhh
Q 035031 54 VPETKGRTLEEIQASITK 71 (75)
Q Consensus 54 ~pet~~~~~~~~~~~~~~ 71 (75)
+|+-.|++.+|..+.+++
T Consensus 3 vPd~~g~~~~~a~~~l~~ 20 (63)
T PF03793_consen 3 VPDLVGMTYDEAKSILEA 20 (63)
T ss_dssp E-TTTTSBHHHHHHHHHH
T ss_pred CCCcCCCcHHHHHHHHHH
Confidence 688899999988776654
No 219
>PHA03255 BDLF3; Provisional
Probab=33.07 E-value=1.1e+02 Score=18.07 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH--HHHHhccCCCCCCHHHH
Q 035031 37 SIFWVICAAGVA--FVTFLVPETKGRTLEEI 65 (75)
Q Consensus 37 ~~f~~~~~~~~~--~~~~~~pet~~~~~~~~ 65 (75)
++|.++.++.++ |..-.|-.+|+++++|-
T Consensus 187 lvfvgltflmlilifaagimma~kn~~l~ea 217 (234)
T PHA03255 187 LVFVGLTFLMLILIFAAGLMMSAKNKPLDEA 217 (234)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcccCchhHH
Confidence 344444444333 33345678999999873
No 220
>PRK03612 spermidine synthase; Provisional
Probab=33.00 E-value=1.6e+02 Score=20.04 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHH
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGV 47 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~ 47 (75)
..|-..+.|-+++.+.+.+++.+.- .+.....++.+.++++..
T Consensus 146 ~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 146 NVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3455667777777777777665543 344444555555544433
No 221
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=32.93 E-value=1.5e+02 Score=19.64 Aligned_cols=51 Identities=12% Similarity=-0.069 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF 52 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~ 52 (75)
++.++++.....+++......+-..+++ .+.....+.-+.....+.+....
T Consensus 333 ~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999888888 56556666666666666665544
No 222
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=32.70 E-value=59 Score=16.89 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=8.3
Q ss_pred HHhccCCCCCCH
Q 035031 51 TFLVPETKGRTL 62 (75)
Q Consensus 51 ~~~~pet~~~~~ 62 (75)
+|.+||.++...
T Consensus 23 ~W~~pe~~~~~~ 34 (95)
T PF13334_consen 23 MWTVPESKEISR 34 (95)
T ss_pred cccCCccccchh
Confidence 467898877654
No 223
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.70 E-value=46 Score=16.83 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=15.7
Q ss_pred hccCCCCCCHHHHHHHHhhc
Q 035031 53 LVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 53 ~~pet~~~~~~~~~~~~~~~ 72 (75)
.+.+-.|+|.+|+.+..+++
T Consensus 59 pVInA~G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 59 PVINASGLTAEEIVQEVEER 78 (80)
T ss_pred eEEecCCCCHHHHHHHHHHh
Confidence 45667899999998887765
No 224
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=32.40 E-value=1.1e+02 Score=18.09 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcc-CCCCCCHH
Q 035031 43 CAAGVAFVTFLVP-ETKGRTLE 63 (75)
Q Consensus 43 ~~~~~~~~~~~~p-et~~~~~~ 63 (75)
.+.+.+..+.+.| +|+..++.
T Consensus 113 ~iiglL~i~~yAPa~teahplv 134 (198)
T COG4512 113 FIIGLLLIFKYAPADTEAHPLV 134 (198)
T ss_pred HHHHHHHHHhcCccccccCCCc
Confidence 3445556677889 88877764
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=32.31 E-value=1.2e+02 Score=18.45 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHH-HHHHhccCCC
Q 035031 31 SKTGTFSIFWVICAAGVA-FVTFLVPETK 58 (75)
Q Consensus 31 ~~~~~~~~f~~~~~~~~~-~~~~~~pet~ 58 (75)
..+|.|++|+...+=+.. ++...+||+.
T Consensus 26 e~YWlfIif~Fp~iG~VaYfvav~LPEl~ 54 (251)
T COG4700 26 ERYWLFIIFCFPVIGCVAYFVAVMLPELG 54 (251)
T ss_pred hHHHHHHHHHhcccchhhHHHHHhhhHhc
Confidence 345666666443322222 2445689985
No 226
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=32.25 E-value=1.1e+02 Score=18.09 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=10.6
Q ss_pred HHHHHHHhc-cCCCCCCHH
Q 035031 46 GVAFVTFLV-PETKGRTLE 63 (75)
Q Consensus 46 ~~~~~~~~~-pet~~~~~~ 63 (75)
+.+.++.+. -||+++|..
T Consensus 123 s~iii~~yAP~dt~nkPi~ 141 (210)
T PRK01100 123 ILLNLFLYAPADTESLPLI 141 (210)
T ss_pred HHHHHHhcCCcCCccCCCC
Confidence 334444555 468888854
No 227
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=32.19 E-value=63 Score=15.12 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=6.0
Q ss_pred CCCCCCHHHHHHHH
Q 035031 56 ETKGRTLEEIQASI 69 (75)
Q Consensus 56 et~~~~~~~~~~~~ 69 (75)
.+-=.|.+|.++.+
T Consensus 28 K~vi~Pie~ke~~~ 41 (54)
T PF11240_consen 28 KTVIEPIEEKEAKI 41 (54)
T ss_pred HHhcCcHHHHHHHH
Confidence 33344555543333
No 228
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=31.48 E-value=24 Score=20.34 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=10.7
Q ss_pred HHHhccCCCCCCHHHHHHHHh
Q 035031 50 VTFLVPETKGRTLEEIQASIT 70 (75)
Q Consensus 50 ~~~~~pet~~~~~~~~~~~~~ 70 (75)
.||+.|| ||+.++ ++.|+
T Consensus 66 GYWY~PD--GR~~~q-Q~~FE 83 (164)
T PF04315_consen 66 GYWYCPD--GRDAEQ-QAEFE 83 (164)
T ss_pred CCCcCCC--CCCHHH-HHHHH
Confidence 4566666 666665 55554
No 229
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=29.77 E-value=23 Score=20.28 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=12.7
Q ss_pred HhccCCCCCCHHHHHHH
Q 035031 52 FLVPETKGRTLEEIQAS 68 (75)
Q Consensus 52 ~~~pet~~~~~~~~~~~ 68 (75)
.|-|||+|.+.+=+++.
T Consensus 100 lFG~Es~GLP~~i~~~~ 116 (155)
T COG0219 100 LFGPESRGLPEEILDAA 116 (155)
T ss_pred EECCCCCCCCHHHHHhC
Confidence 46799999997755543
No 230
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=29.61 E-value=9.9 Score=25.50 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 5 AGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
+.|+....+-+...+.+-+...+.+
T Consensus 425 a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 425 AYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred HHHHHHHHhHHHHHcCcccceeeee
Confidence 3344444444444444444444444
No 231
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=29.30 E-value=1.4e+02 Score=20.41 Aligned_cols=28 Identities=7% Similarity=-0.122 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
|+.+.++++..|-++..+...+-|.+..
T Consensus 174 ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 174 RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 7888899999999998887777776654
No 232
>PF14420 Clr5: Clr5 domain
Probab=28.95 E-value=63 Score=14.70 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHhhc
Q 035031 57 TKGRTLEEIQASITKL 72 (75)
Q Consensus 57 t~~~~~~~~~~~~~~~ 72 (75)
++++|++|+.+..+++
T Consensus 18 ~e~~tl~~v~~~M~~~ 33 (54)
T PF14420_consen 18 DENKTLEEVMEIMKEE 33 (54)
T ss_pred hCCCcHHHHHHHHHHH
Confidence 5799999988777543
No 233
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=27.77 E-value=1.2e+02 Score=16.88 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031 33 TGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64 (75)
Q Consensus 33 ~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~ 64 (75)
.|-.++-...+++. ++..+.+..++++.-..
T Consensus 40 tWQLviNt~ttIit-FlmvfLIQn~q~Rd~~a 70 (132)
T PF04120_consen 40 TWQLVINTATTIIT-FLMVFLIQNTQNRDTKA 70 (132)
T ss_pred hHHHHHccHHHHHH-HHHHHHHHhhhhhHHHH
Confidence 34444444555553 33334456666666443
No 234
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=27.40 E-value=1e+02 Score=16.14 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=11.4
Q ss_pred HHHHhccCCCCCCHHHHHHHHh
Q 035031 49 FVTFLVPETKGRTLEEIQASIT 70 (75)
Q Consensus 49 ~~~~~~pet~~~~~~~~~~~~~ 70 (75)
..||.+..++.+...|.++..+
T Consensus 21 ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 21 IFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHhhcCHHHHHHHHHHHHHH
Confidence 3345565555555555555443
No 235
>PHA00547 hypothetical protein
Probab=27.22 E-value=1.8e+02 Score=18.71 Aligned_cols=37 Identities=5% Similarity=0.143 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Q 035031 8 LVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICA 44 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~ 44 (75)
+|..+||++-+.+.-+-..++. ......+++|-++..
T Consensus 11 w~yian~lF~f~ii~lnl~~I~~~~t~iifiIFfv~~~ 48 (337)
T PHA00547 11 YCYISGSMFLFSLIDLLLWIISLYCVGLVFWILFALQC 48 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhheeecccchhHHHHHHHHH
Confidence 3566666666554443333332 223344555444333
No 236
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=27.01 E-value=1.1e+02 Score=16.46 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=6.0
Q ss_pred hccCCCCCCHHHHH
Q 035031 53 LVPETKGRTLEEIQ 66 (75)
Q Consensus 53 ~~pet~~~~~~~~~ 66 (75)
|+..++.+...+.+
T Consensus 18 f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 18 FMQRQQKKQAQERQ 31 (113)
T ss_pred heechHHHHHHHHH
Confidence 45444444443333
No 237
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=26.82 E-value=1.6e+02 Score=18.16 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 035031 37 SIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 37 ~~f~~~~~~~~~~~~~~~p 55 (75)
+++.++++++.++.+-++|
T Consensus 223 iI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 223 IIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444443333
No 238
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=26.66 E-value=63 Score=15.80 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHH
Q 035031 58 KGRTLEEIQASI 69 (75)
Q Consensus 58 ~~~~~~~~~~~~ 69 (75)
+|+|.+|+++.+
T Consensus 44 ~gks~eeir~~f 55 (78)
T PF01466_consen 44 KGKSPEEIRKYF 55 (78)
T ss_dssp TTS-HHHHHHHH
T ss_pred cCCCHHHHHHHc
Confidence 699999998876
No 239
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=26.44 E-value=1.5e+02 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=16.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM 28 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (75)
|..+...++++.|.+.++++.++..++
T Consensus 126 RT~~fc~vYf~aW~~dll~p~~~~~L~ 152 (642)
T PF11696_consen 126 RTAAFCAVYFIAWLLDLLVPAFFAFLI 152 (642)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555444
No 240
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=26.16 E-value=1.1e+02 Score=15.82 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 35 TFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 35 ~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
.-++.+++.++.+.+..++-||....
T Consensus 22 ~d~Fwgi~~fI~lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 22 TDFFWGIINFIVLFFQTLFSPDSSRS 47 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 34556667777777777777776544
No 241
>cd06575 PASTA_Pbp2x-like_2 PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are attached to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=25.95 E-value=68 Score=13.50 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=13.5
Q ss_pred ccCCCCCCHHHHHHHHhh
Q 035031 54 VPETKGRTLEEIQASITK 71 (75)
Q Consensus 54 ~pet~~~~~~~~~~~~~~ 71 (75)
+|+-.|.+.++..+.+++
T Consensus 2 vp~~~g~~~~~a~~~l~~ 19 (54)
T cd06575 2 MPDLTGWSKRDALKLLEL 19 (54)
T ss_pred CCCcCCCCHHHHHHHHHH
Confidence 577789999887776653
No 242
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=25.87 E-value=84 Score=14.57 Aligned_cols=10 Identities=0% Similarity=-0.283 Sum_probs=4.9
Q ss_pred chHHHHHHHH
Q 035031 32 KTGTFSIFWV 41 (75)
Q Consensus 32 ~~~~~~~f~~ 41 (75)
++|+|++.++
T Consensus 2 PwWvY~vi~g 11 (52)
T PF14147_consen 2 PWWVYFVIAG 11 (52)
T ss_pred cchHHHHHHH
Confidence 3556654433
No 243
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=25.75 E-value=1.8e+02 Score=20.16 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=22.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME 29 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (75)
+|+.++++.....-+++++.+.+......
T Consensus 491 MkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 491 MKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888765444
No 244
>PF11609 DUF3248: Protein of unknown function (DUF3248); InterPro: IPR021650 This family of proteins is thought to be the product of the gene TT1592 from Thermus thermophilus however this cannot be confirmed. Currently there is no known function. ; PDB: 2E6X_A.
Probab=25.72 E-value=81 Score=15.11 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=11.6
Q ss_pred HHhccCCCCCCHHHHHHHHhhc
Q 035031 51 TFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 51 ~~~~pet~~~~~~~~~~~~~~~ 72 (75)
+-.+|.-++.+..|+++..+++
T Consensus 34 F~~LpRLrnv~daeie~~~~~G 55 (63)
T PF11609_consen 34 FAHLPRLRNVSDAEIEAAVQEG 55 (63)
T ss_dssp HHHS---B---HHHHHHHHHCT
T ss_pred hhhchhhccCCHHHHHHHHHcC
Confidence 3468999999999998877654
No 245
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.23 E-value=1.8e+02 Score=18.05 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=15.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFH 25 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~ 25 (75)
+|..|+|+....-...++++.++..
T Consensus 76 i~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3556777776666666666666644
No 246
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=24.97 E-value=2.2e+02 Score=19.00 Aligned_cols=24 Identities=4% Similarity=-0.009 Sum_probs=16.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTF 24 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~ 24 (75)
.|++++|+-....-+++.+..++.
T Consensus 415 ~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 415 LMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788877666666666666665
No 247
>CHL00024 psbI photosystem II protein I
Probab=24.81 E-value=74 Score=13.54 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCH
Q 035031 39 FWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 39 f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
+.++..+..++++-|++..-+++.
T Consensus 9 y~vV~ffvsLFifGFlsnDp~RnP 32 (36)
T CHL00024 9 YTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_pred hhHHHHHHHHHHccccCCCCCCCC
Confidence 334444455556666766555543
No 248
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=24.62 E-value=58 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHhhc
Q 035031 58 KGRTLEEIQASITKL 72 (75)
Q Consensus 58 ~~~~~~~~~~~~~~~ 72 (75)
+|++..||++..+++
T Consensus 130 ~Gks~~eIR~~ID~k 144 (158)
T PF13798_consen 130 EGKSPKEIRQYIDEK 144 (158)
T ss_pred cCCCHHHHHHHHHHH
Confidence 689999987766554
No 249
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=24.60 E-value=38 Score=21.68 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.0
Q ss_pred HhccCCCCCCHHH
Q 035031 52 FLVPETKGRTLEE 64 (75)
Q Consensus 52 ~~~pet~~~~~~~ 64 (75)
+++|+|+|.+..+
T Consensus 106 ~~LPDT~Gt~Yr~ 118 (319)
T PF08893_consen 106 YYLPDTRGTSYRR 118 (319)
T ss_pred ccCCCCCCcchhh
Confidence 5899999988765
No 250
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=24.43 E-value=1.1e+02 Score=15.19 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=8.8
Q ss_pred HhccCCCCCCHHHH
Q 035031 52 FLVPETKGRTLEEI 65 (75)
Q Consensus 52 ~~~pet~~~~~~~~ 65 (75)
...|++.....+-+
T Consensus 25 ~~~p~~~~~~~~~~ 38 (72)
T PF15159_consen 25 KLLPPTGNSILDAI 38 (72)
T ss_pred CCCCCCCChhHHHH
Confidence 45688766655554
No 251
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=24.36 E-value=1.5e+02 Score=16.82 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhc-cCCCCCCHHH
Q 035031 43 CAAGVAFVTFLV-PETKGRTLEE 64 (75)
Q Consensus 43 ~~~~~~~~~~~~-pet~~~~~~~ 64 (75)
..++.+..+.+. -|+++++.++
T Consensus 108 ~~~~~~~i~~~aPv~~~~kpl~~ 130 (185)
T PF04647_consen 108 FIISFIIIIIYAPVDTPNKPLDS 130 (185)
T ss_pred HHHHHHHHHHhcccccccCcCCh
Confidence 344444445555 4588887733
No 252
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=24.30 E-value=28 Score=14.95 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCH
Q 035031 39 FWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 39 f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
|.++..+..++++-|++...+|+.
T Consensus 9 y~vV~ffvsLFiFGflsnDP~RnP 32 (38)
T PRK02655 9 YIVVFFFVGLFVFGFLSSDPTRNP 32 (38)
T ss_pred hhhHHHHHHHHHcccCCCCCCCCC
Confidence 334444445556667766666654
No 253
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=24.29 E-value=83 Score=13.95 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhccCC
Q 035031 41 VICAAGVAFVTFLVPET 57 (75)
Q Consensus 41 ~~~~~~~~~~~~~~pet 57 (75)
..+++..+..|-.+||.
T Consensus 5 ~~~~i~~~~~y~~LP~~ 21 (51)
T PF07853_consen 5 VLPLIITLIFYPQLPDQ 21 (51)
T ss_pred HHHHHHHHHHHHHCChh
Confidence 34455555677778885
No 254
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=24.01 E-value=1.5e+02 Score=17.87 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 035031 12 IHHCINWTITFTFH 25 (75)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (75)
+-|+.+|+.-+++|
T Consensus 169 alWi~gF~~Ff~~P 182 (212)
T PF09878_consen 169 ALWIAGFIGFFLFP 182 (212)
T ss_pred HHHHHHHHHHHHhH
Confidence 35666777766666
No 255
>PRK13912 nuclease NucT; Provisional
Probab=23.77 E-value=29 Score=19.77 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Q 035031 34 GTFSIFWVICAAGVAFVTFLVPET 57 (75)
Q Consensus 34 ~~~~~f~~~~~~~~~~~~~~~pet 57 (75)
++|++.+++.++..---..+.|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~P~~ 30 (177)
T PRK13912 7 GVFLLVGCLGVLQAKSSLYFLPYE 30 (177)
T ss_pred HHHHHHHhhhhhhccceEEECCCC
Confidence 567777887777777666677765
No 256
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=23.56 E-value=2.3e+02 Score=18.81 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 035031 5 AGSLVIFIHHCINWTIT 21 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (75)
|.|++....++...+..
T Consensus 145 G~g~aGv~~s~~~ii~~ 161 (437)
T TIGR00939 145 GQGLAGVLTSLAMILVK 161 (437)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 44555555555544433
No 257
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=23.50 E-value=1.6e+02 Score=16.96 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=12.0
Q ss_pred HHHHHHHHHhc-cCCCCCCHHH
Q 035031 44 AAGVAFVTFLV-PETKGRTLEE 64 (75)
Q Consensus 44 ~~~~~~~~~~~-pet~~~~~~~ 64 (75)
+++.+..+.+. -||++++..+
T Consensus 109 i~s~~~i~~~APv~~~~kpi~~ 130 (184)
T smart00793 109 LIGLVLIYIYAPADTEKQPVIP 130 (184)
T ss_pred HHHHHHHHhcCCcccccCCCCC
Confidence 34444445555 5688888543
No 258
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=23.48 E-value=97 Score=16.20 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC
Q 035031 39 FWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 39 f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
|+.+..+-++.+.+|.+|-.-++
T Consensus 18 Fa~LP~lW~vN~~wF~~~af~~p 40 (94)
T PF10251_consen 18 FAFLPFLWLVNVVWFFREAFSKP 40 (94)
T ss_pred HHHhHHHHHHHHHHHhHHHhcCC
Confidence 44555666666767777765554
No 259
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=23.39 E-value=80 Score=13.43 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 38 IFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 38 ~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
.+.++..+..++++-|++..-+++.
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred ehhhHHHHHHHHhccccCCCCCCCC
Confidence 4445555555666667766555543
No 260
>COG1288 Predicted membrane protein [Function unknown]
Probab=23.01 E-value=2.6e+02 Score=19.19 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hc-----c-hHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 11 FIHHCINWTITFTFHFMME-WS-----K-TGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~-----~-~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
..+...+.+.++..-...+ .+ + ..=...+.+..+++..+++++..+-|..+
T Consensus 188 ~iG~~~St~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP 245 (481)
T COG1288 188 QIGFAASTMNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKVKKDP 245 (481)
T ss_pred ccchhhhhcCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444455555555554443 11 1 11123345556667778888776655554
No 261
>smart00740 PASTA PASTA domain.
Probab=22.88 E-value=88 Score=13.74 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.4
Q ss_pred hccCCCCCCHHHHHHHHhh
Q 035031 53 LVPETKGRTLEEIQASITK 71 (75)
Q Consensus 53 ~~pet~~~~~~~~~~~~~~ 71 (75)
-+|+-.|.+.++..+.+++
T Consensus 6 ~vp~~~g~~~~~a~~~l~~ 24 (66)
T smart00740 6 EVPDVIGLSKEEAKKLLKA 24 (66)
T ss_pred eCCCcCCCCHHHHHHHHHH
Confidence 3688889999887766653
No 262
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=22.74 E-value=1.2e+02 Score=18.28 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=2.3
Q ss_pred HhccCCCCCCHHH
Q 035031 52 FLVPETKGRTLEE 64 (75)
Q Consensus 52 ~~~pet~~~~~~~ 64 (75)
...|||.....++
T Consensus 19 i~~Pet~~~~~~~ 31 (210)
T PF07662_consen 19 IMYPETEESETKG 31 (210)
T ss_dssp HHS---S------
T ss_pred hcCCCCCCCcccc
Confidence 4569887665443
No 263
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.80 E-value=1.5e+02 Score=15.93 Aligned_cols=14 Identities=0% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHhccCCCCCCHHH
Q 035031 51 TFLVPETKGRTLEE 64 (75)
Q Consensus 51 ~~~~pet~~~~~~~ 64 (75)
||++-.++.|...+
T Consensus 18 yF~~iRPQkKr~K~ 31 (109)
T PRK05886 18 MYFASRRQRKAMQA 31 (109)
T ss_pred HHHHccHHHHHHHH
Confidence 44454444443333
No 264
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=21.77 E-value=1.1e+02 Score=14.87 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHH
Q 035031 57 TKGRTLEEIQASI 69 (75)
Q Consensus 57 t~~~~~~~~~~~~ 69 (75)
+.|+|++|..++.
T Consensus 28 s~G~T~eea~~n~ 40 (73)
T COG1598 28 SQGETLEEALQNA 40 (73)
T ss_pred ccCCCHHHHHHHH
Confidence 5688888765544
No 265
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=21.01 E-value=1.3e+02 Score=15.11 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=11.4
Q ss_pred cCCCCCCHHHHHHHH
Q 035031 55 PETKGRTLEEIQASI 69 (75)
Q Consensus 55 pet~~~~~~~~~~~~ 69 (75)
|.|+|.+..+....+
T Consensus 62 PTT~GlsDS~~al~y 76 (78)
T TIGR01598 62 PTTSGLSDSLRVQNY 76 (78)
T ss_pred CCCCCCCchHHhhcc
Confidence 889999988765443
No 266
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=21.00 E-value=99 Score=15.87 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.7
Q ss_pred hccCCCCCCHHHHHHHHh
Q 035031 53 LVPETKGRTLEEIQASIT 70 (75)
Q Consensus 53 ~~pet~~~~~~~~~~~~~ 70 (75)
++|+++..|.+|+.+.++
T Consensus 56 i~~e~~~lT~~E~~~ll~ 73 (86)
T PF12958_consen 56 IFPEPKDLTNDEFYELLE 73 (86)
T ss_pred HhhcchhcCHHHHHHHHH
Confidence 579999999999876654
No 267
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.79 E-value=1.4e+02 Score=15.09 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.5
Q ss_pred HHHhccCCCCCCHHH
Q 035031 50 VTFLVPETKGRTLEE 64 (75)
Q Consensus 50 ~~~~~pet~~~~~~~ 64 (75)
.||++-.++.+..++
T Consensus 16 ~yf~~~rpqkK~~k~ 30 (84)
T TIGR00739 16 FYFLIIRPQRKRRKA 30 (84)
T ss_pred HHHheechHHHHHHH
Confidence 345554444443333
No 268
>cd06573 PASTA PASTA domain. This domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular fold consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.
Probab=20.70 E-value=90 Score=13.04 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=12.2
Q ss_pred ccCCCCCCHHHHHHHHh
Q 035031 54 VPETKGRTLEEIQASIT 70 (75)
Q Consensus 54 ~pet~~~~~~~~~~~~~ 70 (75)
+|+-.|++.+|..+..+
T Consensus 2 ~p~~~g~~~~~a~~~l~ 18 (53)
T cd06573 2 VPDLVGISKKDLEEQLY 18 (53)
T ss_pred CCcccCCcHHHHHHHHH
Confidence 57777888888766554
No 269
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=20.47 E-value=99 Score=20.53 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.6
Q ss_pred HHhccCCCCCCHHHHHHHHhhc
Q 035031 51 TFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 51 ~~~~pet~~~~~~~~~~~~~~~ 72 (75)
..++-|+.|.+.+|+++.+.++
T Consensus 248 i~~l~~~~~~s~~~i~~~LNkk 269 (396)
T COG0282 248 ILYLMEQEGMSAEEIDTLLNKK 269 (396)
T ss_pred HHHHHHhcCCCHHHHHHHHhhh
Confidence 4567888999999998877655
Done!