Query 035031
Match_columns 75
No_of_seqs 103 out of 1192
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.7 6.6E-18 2.2E-22 104.7 6.6 74 1-74 403-483 (491)
2 4aps_A DI-OR tripeptide H+ sym 97.4 0.00026 9E-09 43.8 4.3 62 1-62 419-480 (491)
3 2xut_A Proton/peptide symporte 97.1 0.0005 1.7E-08 43.0 3.7 66 1-66 438-515 (524)
4 2cfq_A Lactose permease; trans 96.7 0.0017 6E-08 39.8 3.8 61 2-62 346-408 (417)
5 1pw4_A Glycerol-3-phosphate tr 96.6 0.00085 2.9E-08 40.9 1.8 52 2-53 380-433 (451)
6 1pw4_A Glycerol-3-phosphate tr 96.1 0.016 5.6E-07 35.2 5.5 58 2-59 153-212 (451)
7 2gfp_A EMRD, multidrug resista 95.5 0.0088 3E-07 35.7 2.5 59 2-60 122-181 (375)
8 4aps_A DI-OR tripeptide H+ sym 94.1 0.47 1.6E-05 29.3 7.7 54 2-55 144-198 (491)
9 2xut_A Proton/peptide symporte 90.9 1.2 4E-05 27.8 6.5 50 2-51 143-196 (524)
10 3o7q_A L-fucose-proton symport 90.4 1.6 5.4E-05 26.3 6.6 27 2-28 151-177 (438)
11 3o7q_A L-fucose-proton symport 87.2 1.2 4E-05 26.9 4.5 39 3-42 381-421 (438)
12 3ff5_A PEX14P, peroxisomal bio 74.4 1.5 5.1E-05 19.9 1.3 16 56-71 38-53 (54)
13 2w84_A Peroxisomal membrane pr 69.9 2.1 7.3E-05 20.4 1.3 17 56-72 43-59 (70)
14 2gfp_A EMRD, multidrug resista 62.7 3.6 0.00012 24.3 1.6 29 2-30 324-352 (375)
15 3mmy_B Nuclear pore complex pr 39.8 21 0.00072 16.2 1.8 16 51-66 32-47 (56)
16 3iyz_A Aquaporin-4; water tran 34.7 62 0.0021 20.1 3.8 24 34-57 248-273 (340)
17 1fs1_B SKP1, cyclin A/CDK2-ass 34.6 21 0.00071 18.8 1.6 14 57-70 121-134 (141)
18 1dx7_A Light-harvesting protei 33.1 36 0.0012 14.9 2.0 22 34-55 25-46 (48)
19 2b6o_A Aquaporin-0, lens fiber 31.7 81 0.0028 18.5 4.1 32 32-63 200-231 (263)
20 1nkz_B Light-harvesting protei 31.3 36 0.0012 14.3 3.3 21 35-55 18-38 (41)
21 1g1s_C PSGL-1 peptide, PSGL-1; 30.1 14 0.00049 13.9 0.3 9 51-59 10-18 (28)
22 3ouv_A Serine/threonine protei 29.1 46 0.0016 15.0 2.2 18 54-71 10-27 (71)
23 1lgh_B LH II, B800/850, light 28.9 42 0.0015 14.4 3.3 21 35-55 23-43 (45)
24 2x4i_A CAG38848, uncharacteriz 26.5 48 0.0016 17.2 2.0 20 54-73 86-105 (114)
25 3v7d_A Suppressor of kinetocho 25.8 43 0.0015 18.3 1.9 14 57-70 133-146 (169)
26 2zz9_A Aquaporin-4; water tran 23.6 1.3E+02 0.0044 18.2 4.0 23 32-54 207-229 (301)
27 2e6x_A TT1592, hypothetical pr 22.3 73 0.0025 14.8 2.7 22 51-72 39-60 (69)
28 2p1m_A SKP1-like protein 1A; F 21.4 49 0.0017 17.7 1.6 16 55-70 123-138 (160)
29 1j4n_A Aquaporin 1; membrane p 21.4 1.4E+02 0.0047 17.6 4.6 30 32-61 210-239 (271)
30 2ww9_A SEC sixty-one protein h 21.1 1.8E+02 0.0062 18.9 4.4 33 39-72 370-403 (490)
31 1hym_A CMTI-V, hydrolyzed cucu 20.6 66 0.0023 13.7 2.4 19 55-73 11-29 (45)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.73 E-value=6.6e-18 Score=104.72 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=63.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhcc
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLS 73 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~ 73 (75)
+|+++++++...+|+++++.++++|.+.+ .+....|++++++++++.+++++++||||||++||+|+.+++++
T Consensus 403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 58999999999999999999999998754 23346789999999999999999999999999999999997764
Q ss_pred C
Q 035031 74 R 74 (75)
Q Consensus 74 ~ 74 (75)
+
T Consensus 483 ~ 483 (491)
T 4gc0_A 483 K 483 (491)
T ss_dssp -
T ss_pred c
Confidence 3
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.35 E-value=0.00026 Score=43.83 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=45.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
.|++++++....++++.++.+.+.+.+.+.+....|..+++.+++..+..+++.++++++..
T Consensus 419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999887776666678888888888888888877788776543
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.10 E-value=0.0005 Score=42.98 Aligned_cols=66 Identities=9% Similarity=-0.092 Sum_probs=39.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hc----------c-hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 035031 1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WS----------K-TGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ 66 (75)
Q Consensus 1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~ 66 (75)
.|++++|+.....++++.+.+.+.+.+.+ .+ . ...|+++++..++..+..+++.+++++++.++.+
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQA 515 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 38899999999999999999999987765 11 0 1236677777777777777777888887766544
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.71 E-value=0.0017 Score=39.77 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=46.3
Q ss_pred cchhHHHH-HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031 2 KGLAGSLV-IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL 62 (75)
Q Consensus 2 R~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~ 62 (75)
|+++.+++ ...+++++.+.+.+.+.+.+ .+....|.+.++..+++.+..++..||+|..++
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 56677774 67778999999999998887 555567777788888877777777788776554
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.61 E-value=0.00085 Score=40.89 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHh
Q 035031 2 KGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFL 53 (75)
Q Consensus 2 R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~ 53 (75)
|+++.++......+ +..+.+.+...+.+ .+....+++.++..+++.+..++.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999 99999999999988 566678888887777776665543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.09 E-value=0.016 Score=35.20 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=45.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKG 59 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~ 59 (75)
|++++++......++..+.+.+...+.+ .+ ..+.|++.++..++..+..++++||++.
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 6788888888888888888888877666 55 6677888888888777777788888654
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=95.49 E-value=0.0088 Score=35.75 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~ 60 (75)
|++++++......++..+.+.+...+.+ .+....+++.++...+..+..++++||++..
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 7788888888888888888888777665 4545667767776666666566678887543
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.09 E-value=0.47 Score=29.25 Aligned_cols=54 Identities=13% Similarity=-0.012 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p 55 (75)
|+.+.++......++..+.+.+...+.+ .+..+.|++.++..++..+..++..|
T Consensus 144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455666668888888888888888777 55566777766666655555444333
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=90.92 E-value=1.2 Score=27.78 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=31.4
Q ss_pred cchhHHH---HHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSL---VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT 51 (75)
Q Consensus 2 R~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~ 51 (75)
|+++.+. ......++..+.+.+...+.+ .+..+.|++.++..++..+..+
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 777777777777777777776 4555667666666555544443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=90.44 E-value=1.6 Score=26.31 Aligned_cols=27 Identities=4% Similarity=-0.182 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMM 28 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (75)
|++++++......++..+.+.+...+.
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999988888777
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=87.21 E-value=1.2 Score=26.90 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHH
Q 035031 3 GLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVI 42 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~ 42 (75)
+.+.++.. .++++..+.+.+...+.+ .+ ....|++.++.
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45566666 677889999999998888 55 55566554433
No 12
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=74.42 E-value=1.5 Score=19.86 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHHHhh
Q 035031 56 ETKGRTLEEIQASITK 71 (75)
Q Consensus 56 et~~~~~~~~~~~~~~ 71 (75)
+.||.+.+||++.+++
T Consensus 38 ~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHc
Confidence 4578888888877654
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=69.88 E-value=2.1 Score=20.40 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHhhc
Q 035031 56 ETKGRTLEEIQASITKL 72 (75)
Q Consensus 56 et~~~~~~~~~~~~~~~ 72 (75)
|.||.+.+||++.+++.
T Consensus 43 ~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHc
Confidence 46899999999888653
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=62.66 E-value=3.6 Score=24.30 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035031 2 KGLAGSLVIFIHHCINWTITFTFHFMMEW 30 (75)
Q Consensus 2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (75)
|+++.++....+.++..+.+.+...+.+.
T Consensus 324 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 324 AGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788888888888888888887777663
No 15
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=39.81 E-value=21 Score=16.17 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHhccCCCCCCHHHHH
Q 035031 51 TFLVPETKGRTLEEIQ 66 (75)
Q Consensus 51 ~~~~pet~~~~~~~~~ 66 (75)
+-+||+=+++++||++
T Consensus 32 Is~M~~Y~~~S~EELR 47 (56)
T 3mmy_B 32 ITAMKEYESKSLEELR 47 (56)
T ss_dssp GGGSTTTTTSCHHHHH
T ss_pred EecchhhhcCCHHHHH
Confidence 3478999999999986
No 16
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=34.68 E-value=62 Score=20.05 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HhccCC
Q 035031 34 GTFSIFWVICAAGVAFVT--FLVPET 57 (75)
Q Consensus 34 ~~~~~f~~~~~~~~~~~~--~~~pet 57 (75)
|+|++--++..+...++| .+.|+.
T Consensus 248 WVywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 248 WIYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred eehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 455544344333333333 344543
No 17
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=34.60 E-value=21 Score=18.81 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHh
Q 035031 57 TKGRTLEEIQASIT 70 (75)
Q Consensus 57 t~~~~~~~~~~~~~ 70 (75)
-||++.+|+++.|.
T Consensus 121 ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 121 IKGKTPEEIRKTFN 134 (141)
T ss_dssp HTTCCHHHHHHHTC
T ss_pred HcCCCHHHHHHHcC
Confidence 48999999998774
No 18
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=33.12 E-value=36 Score=14.88 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 035031 34 GTFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 34 ~~~~~f~~~~~~~~~~~~~~~p 55 (75)
..+..|.++.+++-+.+|.+-|
T Consensus 25 ~~~~~F~~iA~vAH~l~w~wrP 46 (48)
T 1dx7_A 25 SGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHTTHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3566777778888887776544
No 19
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=31.68 E-value=81 Score=18.53 Aligned_cols=32 Identities=9% Similarity=-0.076 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 035031 32 KTGTFSIFWVICAAGVAFVTFLVPETKGRTLE 63 (75)
Q Consensus 32 ~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~ 63 (75)
..|.|++--.+..+...++|.++-.++.++.+
T Consensus 200 ~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~~~~ 231 (263)
T 2b6o_A 200 NHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVS 231 (263)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHTTTSCCSSCHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhCCccchhh
Confidence 34566655555555445555555444444443
No 20
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=31.26 E-value=36 Score=14.34 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 035031 35 TFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 35 ~~~~f~~~~~~~~~~~~~~~p 55 (75)
.+..|.++.+++-+.++.+-|
T Consensus 18 ~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 18 GTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 466777788888887776554
No 21
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=30.08 E-value=14 Score=13.89 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=6.1
Q ss_pred HHhccCCCC
Q 035031 51 TFLVPETKG 59 (75)
Q Consensus 51 ~~~~pet~~ 59 (75)
+=|+|||..
T Consensus 10 ydflpetep 18 (28)
T 1g1s_C 10 YDFLPETEP 18 (28)
T ss_pred ccccccCCC
Confidence 347898864
No 22
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=29.09 E-value=46 Score=14.96 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=14.2
Q ss_pred ccCCCCCCHHHHHHHHhh
Q 035031 54 VPETKGRTLEEIQASITK 71 (75)
Q Consensus 54 ~pet~~~~~~~~~~~~~~ 71 (75)
+|+-.|++.+|..+.+++
T Consensus 10 VPdv~G~~~~~A~~~L~~ 27 (71)
T 3ouv_A 10 IPDVAGQTVDVAQKNMNV 27 (71)
T ss_dssp CCCCTTCBHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHH
Confidence 688899999987776654
No 23
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=28.90 E-value=42 Score=14.42 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 035031 35 TFSIFWVICAAGVAFVTFLVP 55 (75)
Q Consensus 35 ~~~~f~~~~~~~~~~~~~~~p 55 (75)
.+..|.++.+++-+.++.+-|
T Consensus 23 ~~~~F~~iA~vAH~L~~~wrP 43 (45)
T 1lgh_B 23 TFSAFIILAAVAHVLVWVWKP 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 466777788888887776554
No 24
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=26.52 E-value=48 Score=17.24 Aligned_cols=20 Identities=35% Similarity=0.150 Sum_probs=11.4
Q ss_pred ccCCCCCCHHHHHHHHhhcc
Q 035031 54 VPETKGRTLEEIQASITKLS 73 (75)
Q Consensus 54 ~pet~~~~~~~~~~~~~~~~ 73 (75)
+||-+=.+.+|+.+.+++++
T Consensus 86 l~EG~vl~~eEi~k~~e~g~ 105 (114)
T 2x4i_A 86 LEEGKILTLEEILKLYESGK 105 (114)
T ss_dssp -----CCCHHHHHHHHHHTC
T ss_pred CCCCccCCHHHHHHHHHcCc
Confidence 46666667788888887663
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.76 E-value=43 Score=18.26 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=11.5
Q ss_pred CCCCCHHHHHHHHh
Q 035031 57 TKGRTLEEIQASIT 70 (75)
Q Consensus 57 t~~~~~~~~~~~~~ 70 (75)
.||++.+|+++.|.
T Consensus 133 ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 133 IRGRSPEEIRRTFN 146 (169)
T ss_dssp HTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcC
Confidence 37999999988774
No 26
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=23.64 E-value=1.3e+02 Score=18.20 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc
Q 035031 32 KTGTFSIFWVICAAGVAFVTFLV 54 (75)
Q Consensus 32 ~~~~~~~f~~~~~~~~~~~~~~~ 54 (75)
..|.|++--.+..+...++|.++
T Consensus 207 ~~WVy~vgPiiGailaa~ly~~l 229 (301)
T 2zz9_A 207 NHWIYWVGPIIGAVLAGALYEYV 229 (301)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeeeeHHHHHHHHHHHHHHHH
Confidence 34556554444444444444433
No 27
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=22.29 E-value=73 Score=14.84 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=17.7
Q ss_pred HHhccCCCCCCHHHHHHHHhhc
Q 035031 51 TFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 51 ~~~~pet~~~~~~~~~~~~~~~ 72 (75)
+-.+|.-++.+..|+++..+++
T Consensus 39 Fa~LpRLrnv~daeve~~~~~G 60 (69)
T 2e6x_A 39 FRELPRLLNLPEAEMRRLVQEG 60 (69)
T ss_dssp HHHSCCCBCCCHHHHHHHHHTT
T ss_pred hhhchhhccCCHHHHHHHHHcC
Confidence 3468999999999998877654
No 28
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.36 E-value=49 Score=17.74 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.5
Q ss_pred cCCCCCCHHHHHHHHh
Q 035031 55 PETKGRTLEEIQASIT 70 (75)
Q Consensus 55 pet~~~~~~~~~~~~~ 70 (75)
-..||++.+|+++.|.
T Consensus 123 ~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 123 DMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HTTTTCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHcC
Confidence 4468999999988763
No 29
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=21.35 E-value=1.4e+02 Score=17.65 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031 32 KTGTFSIFWVICAAGVAFVTFLVPETKGRT 61 (75)
Q Consensus 32 ~~~~~~~f~~~~~~~~~~~~~~~pet~~~~ 61 (75)
..|.|++--.+..+...++|.++-+++..+
T Consensus 210 ~~wv~~vgP~~Ga~la~~~y~~~~~~~~~~ 239 (271)
T 1j4n_A 210 DHWIFWVGPFIGAALAVLIYDFILAPRSSD 239 (271)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTSCCSSC
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 345666555555544445565554444333
No 30
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=21.09 E-value=1.8e+02 Score=18.93 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=20.0
Q ss_pred HHHHHHHHHH-HHHHhccCCCCCCHHHHHHHHhhc
Q 035031 39 FWVICAAGVA-FVTFLVPETKGRTLEEIQASITKL 72 (75)
Q Consensus 39 f~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~~~ 72 (75)
|..+.++..+ +.+++ -|..|.+.+|+.+++++.
T Consensus 370 Y~~~~~~lii~Fs~fy-~~i~g~np~dvA~nLkk~ 403 (490)
T 2ww9_A 370 YSAFILVTGIWFADKW-QAISGSSARDVALEFKDQ 403 (490)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHc
Confidence 4444333333 44443 477888999888887654
No 31
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=20.58 E-value=66 Score=13.69 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=13.3
Q ss_pred cCCCCCCHHHHHHHHhhcc
Q 035031 55 PETKGRTLEEIQASITKLS 73 (75)
Q Consensus 55 pet~~~~~~~~~~~~~~~~ 73 (75)
||--|.+-++-.+..++++
T Consensus 11 PELVG~~~~~A~~~I~~e~ 29 (45)
T 1hym_A 11 PHLVGVGGSVAKAIIERQN 29 (45)
T ss_dssp CCCTTSCHHHHHHHHHHHC
T ss_pred hhhcCCcHHHHHHHHHHHC
Confidence 7888888887666555443
Done!