Query 035032
Match_columns 75
No_of_seqs 35 out of 37
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l02_A Uncharacterized protein 51.4 6.2 0.00021 25.1 1.4 11 9-19 39-49 (82)
2 2l01_A Uncharacterized protein 49.8 6.2 0.00021 24.9 1.2 11 9-19 42-52 (77)
3 2pjv_A Envelope glycoprotein; 46.6 5.3 0.00018 21.8 0.4 12 6-17 2-13 (31)
4 1b9u_A Protein (ATP synthase); 33.4 49 0.0017 16.5 3.0 20 8-27 12-31 (34)
5 2f95_B Sensory rhodopsin II tr 28.1 19 0.00066 21.1 0.9 28 7-35 69-96 (163)
6 2z6o_A UFM1-conjugating enzyme 26.6 34 0.0012 24.3 2.0 16 7-22 139-157 (172)
7 1d2t_A Acid phosphatase; all a 24.1 84 0.0029 21.1 3.6 29 7-35 194-227 (231)
8 1q90_M Cytochrome B6F complex 20.5 86 0.0029 17.5 2.6 15 6-20 16-30 (39)
9 1vf5_F Protein PET M; photosyn 19.6 80 0.0027 17.3 2.2 14 6-19 15-28 (35)
10 2yev_C CAA3-type cytochrome ox 24.3 24 0.00081 22.0 0.0 21 4-25 5-25 (66)
No 1
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.37 E-value=6.2 Score=25.14 Aligned_cols=11 Identities=73% Similarity=1.096 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 035032 9 GALAFGWLAIE 19 (75)
Q Consensus 9 gaLAlGWLaIE 19 (75)
.++|+|||+=|
T Consensus 39 l~lAIGWLaRE 49 (82)
T 2l02_A 39 TALAVGWLARE 49 (82)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 47899999844
No 2
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=49.82 E-value=6.2 Score=24.90 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q 035032 9 GALAFGWLAIE 19 (75)
Q Consensus 9 gaLAlGWLaIE 19 (75)
.++|+|||+=|
T Consensus 42 l~lAiGWLaRE 52 (77)
T 2l01_A 42 FFLGLGWLLRE 52 (77)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 47899999854
No 3
>2pjv_A Envelope glycoprotein; HIV, GP41, fusion, peptide, domain, membrane, DPC, viral protein; NMR {Human immunodeficiency virus 1}
Probab=46.63 E-value=5.3 Score=21.85 Aligned_cols=12 Identities=42% Similarity=0.755 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q 035032 6 TVVGALAFGWLA 17 (75)
Q Consensus 6 VVvgaLAlGWLa 17 (75)
|.+|+++||||.
T Consensus 2 v~lGa~FLGFLg 13 (31)
T 2pjv_A 2 VGIGALFLGFLG 13 (31)
T ss_dssp CSHHHHHHTHHH
T ss_pred chhhhHHHHHhh
Confidence 457899999875
No 4
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.35 E-value=49 Score=16.52 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q 035032 8 VGALAFGWLAIELALKPFLD 27 (75)
Q Consensus 8 vgaLAlGWLaIElAfKPfLd 27 (75)
+.-+++.|+.--.+|||..+
T Consensus 12 i~Flil~~~l~kf~~~Pi~~ 31 (34)
T 1b9u_A 12 IAFVLFVLFCMKYVWPPLMA 31 (34)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999875
No 5
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=28.06 E-value=19 Score=21.14 Aligned_cols=28 Identities=4% Similarity=-0.160 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhcc
Q 035032 7 VVGALAFGWLAIELALKPFLDKVRAAMDK 35 (75)
Q Consensus 7 VvgaLAlGWLaIElAfKPfLdk~R~Aidr 35 (75)
++.+++++|+......+|. .+..+++.+
T Consensus 69 ~~~~~~~~~~~~~~i~~pl-~~l~~~~~~ 96 (163)
T 2f95_B 69 GINLGLVAATLGGDTAASL-STLAAKASR 96 (163)
T ss_dssp HHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344555666666667884 566666666
No 6
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=26.62 E-value=34 Score=24.28 Aligned_cols=16 Identities=38% Similarity=0.823 Sum_probs=11.7
Q ss_pred HHHHHHHH---HHHHHHhh
Q 035032 7 VVGALAFG---WLAIELAL 22 (75)
Q Consensus 7 VvgaLAlG---WLaIElAf 22 (75)
+..+|+|| ||++|+..
T Consensus 139 IahiL~lgl~pwla~eip~ 157 (172)
T 2z6o_A 139 LAHLMALGLGPWLAVEIPD 157 (172)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHhhccCchhhhhhHH
Confidence 45566666 99999864
No 7
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=24.07 E-value=84 Score=21.13 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH-----HhhhhhHHHHHHhhcc
Q 035032 7 VVGALAFGWLAIE-----LALKPFLDKVRAAMDK 35 (75)
Q Consensus 7 VvgaLAlGWLaIE-----lAfKPfLdk~R~Aidr 35 (75)
|++|.++|++... -.|+-.|+++|+-+.+
T Consensus 194 VlaG~~lG~~~~~~~~~~~~~~~~~~~a~~e~~~ 227 (231)
T 1d2t_A 194 VDAARVVGSAVVATLHTNPAFQQQLQKAKAEFAQ 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 4455555554433 4568888888876644
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=20.54 E-value=86 Score=17.53 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 035032 6 TVVGALAFGWLAIEL 20 (75)
Q Consensus 6 VVvgaLAlGWLaIEl 20 (75)
+++.+|++|.+...+
T Consensus 16 L~LvGla~Gf~LLki 30 (39)
T 1q90_M 16 MTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 455566777665543
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=19.62 E-value=80 Score=17.27 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 035032 6 TVVGALAFGWLAIE 19 (75)
Q Consensus 6 VVvgaLAlGWLaIE 19 (75)
.++.+|++|.+...
T Consensus 15 LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 15 LIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhe
Confidence 45556777776654
No 10
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=24.34 E-value=24 Score=22.04 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 035032 4 ALTVVGALAFGWLAIELALKPF 25 (75)
Q Consensus 4 avVVvgaLAlGWLaIElAfKPf 25 (75)
++.++|++..+|+ +.+++.|-
T Consensus 5 alF~iGa~lVt~~-~Yl~lnPR 25 (66)
T 2yev_C 5 ALFALGAALVTLF-FYLILNPR 25 (66)
Confidence 6788999999997 46777774
Done!