Query 035032
Match_columns 75
No_of_seqs 35 out of 37
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 14:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3czha1 a.104.1.1 (A:40-502) V 32.7 39 0.0028 20.6 4.6 35 9-43 276-312 (463)
2 d1po5a_ a.104.1.1 (A:) Mammali 25.9 54 0.0039 20.3 4.5 27 10-36 277-304 (465)
3 d2d6ya2 a.121.1.1 (A:75-192) P 25.1 36 0.0027 19.5 3.3 24 4-27 72-95 (118)
4 d1q90d_ f.32.1.1 (D:) Subunit 23.2 25 0.0018 22.3 2.4 20 4-24 128-147 (156)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 22.6 26 0.0019 17.2 1.9 13 11-23 2-14 (27)
6 d2in1a1 d.20.1.4 (A:3-164) Ufm 20.6 18 0.0013 24.1 1.4 12 9-20 134-148 (162)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 18.9 23 0.0017 18.2 1.3 13 10-22 11-23 (34)
8 d1tqna_ a.104.1.1 (A:) Mammali 16.2 1.2E+02 0.0087 18.6 4.9 28 8-35 282-310 (472)
9 d2hz5a1 d.110.7.1 (A:5-94) Dyn 13.5 40 0.0029 19.3 1.6 18 22-39 42-59 (90)
10 d2ae8a2 d.14.1.9 (A:85-179) Im 12.2 64 0.0047 19.0 2.3 20 17-36 76-95 (95)
No 1
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.73 E-value=39 Score=20.57 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHhhcc-cCCCCCCC
Q 035032 9 GALAFGWLAIELALKP-FLDKVRAAMDK-SDPARDPD 43 (75)
Q Consensus 9 gaLAlGWLaIElAfKP-fLdk~R~Aidr-SDP~~DPD 43 (75)
.+-++.|....++=.| +++|+|+-|+. ..+...|+
T Consensus 276 t~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~ 312 (463)
T d3czha1 276 TTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPS 312 (463)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCC
T ss_pred chhhhhhHHHhhccCcHHHHHHHHHHHhhcCCCCCCC
Confidence 4567889999999998 88899988877 45555554
No 2
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=25.93 E-value=54 Score=20.26 Aligned_cols=27 Identities=7% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHHhhccc
Q 035032 10 ALAFGWLAIELALKP-FLDKVRAAMDKS 36 (75)
Q Consensus 10 aLAlGWLaIElAfKP-fLdk~R~AidrS 36 (75)
+.++.|+..+++--| ..+|+|+.|+..
T Consensus 277 a~~l~~~l~~l~~~p~~~~kl~~ei~~~ 304 (465)
T d1po5a_ 277 STTLRYGFLLMLKYPHVTERVQKEIEQV 304 (465)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 667889999999999 678899999884
No 3
>d2d6ya2 a.121.1.1 (A:75-192) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=25.13 E-value=36 Score=19.52 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHH
Q 035032 4 ALTVVGALAFGWLAIELALKPFLD 27 (75)
Q Consensus 4 avVVvgaLAlGWLaIElAfKPfLd 27 (75)
-.+.+.+|+++|++.--.+.-++.
T Consensus 72 l~~~I~al~~~~~~~~~~~~~l~g 95 (118)
T d2d6ya2 72 LLFLLVAMANWAVVVPQMKRILVG 95 (118)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhchHHHHhhcC
Confidence 357889999999999888877763
No 4
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.17 E-value=25 Score=22.34 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 035032 4 ALTVVGALAFGWLAIELALKP 24 (75)
Q Consensus 4 avVVvgaLAlGWLaIElAfKP 24 (75)
.+.+++.+.|.||.| .+.+|
T Consensus 128 ~~f~~~~~~l~~Lgi-~~~~P 147 (156)
T d1q90d_ 128 ILFLLGTLVAVWLGI-GSTFP 147 (156)
T ss_dssp HHHHHHHHHHHHHHH-HTTSC
T ss_pred HHHHHHHHHHHHHHh-ccCcC
Confidence 456788888999998 67777
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.58 E-value=26 Score=17.25 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhh
Q 035032 11 LAFGWLAIELALK 23 (75)
Q Consensus 11 LAlGWLaIElAfK 23 (75)
+.|||.+.-+.|.
T Consensus 2 ~~lgwv~llvvft 14 (27)
T d2e74h1 2 DVLGWVALLVVFT 14 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhHhHHHHHhh
Confidence 4678888777664
No 6
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.55 E-value=18 Score=24.12 Aligned_cols=12 Identities=50% Similarity=1.146 Sum_probs=8.7
Q ss_pred HHHHHH---HHHHHH
Q 035032 9 GALAFG---WLAIEL 20 (75)
Q Consensus 9 gaLAlG---WLaIEl 20 (75)
=||||| ||++|+
T Consensus 134 HalaLGL~PWLA~Ei 148 (162)
T d2in1a1 134 HLMALGLGPWLAVEI 148 (162)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHHHhccchhhhhhh
Confidence 355555 999998
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=18.93 E-value=23 Score=18.17 Aligned_cols=13 Identities=54% Similarity=0.940 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhh
Q 035032 10 ALAFGWLAIELAL 22 (75)
Q Consensus 10 aLAlGWLaIElAf 22 (75)
+---|||++.+|.
T Consensus 11 ayekgwlafslam 23 (34)
T d1xmeb2 11 AYEKGWLAFSLAM 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 4456999988764
No 8
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.17 E-value=1.2e+02 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhh-hHHHHHHhhcc
Q 035032 8 VGALAFGWLAIELALKP-FLDKVRAAMDK 35 (75)
Q Consensus 8 vgaLAlGWLaIElAfKP-fLdk~R~Aidr 35 (75)
..+.++.|+..+++-.| .+++.|+-|++
T Consensus 282 tta~~l~~~l~~L~~~Pe~~~klr~Ei~~ 310 (472)
T d1tqna_ 282 TTSSVLSFIMYELATHPDVQQKLQEEIDA 310 (472)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccccceeeccccccCccccccccceehe
Confidence 45678889999999999 56899988887
No 9
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=40 Score=19.33 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=14.9
Q ss_pred hhhhHHHHHHhhcccCCC
Q 035032 22 LKPFLDKVRAAMDKSDPA 39 (75)
Q Consensus 22 fKPfLdk~R~AidrSDP~ 39 (75)
+.+|..++|..+...||.
T Consensus 42 ~~~l~~~A~~~vrdlDp~ 59 (90)
T d2hz5a1 42 MHSFILKARSTVRDIDPQ 59 (90)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 568999999999877764
No 10
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=12.21 E-value=64 Score=19.02 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.9
Q ss_pred HHHHhhhhhHHHHHHhhccc
Q 035032 17 AIELALKPFLDKVRAAMDKS 36 (75)
Q Consensus 17 aIElAfKPfLdk~R~AidrS 36 (75)
.||-.||-|=-..|+|+.+|
T Consensus 76 i~Ea~FKa~arALr~Av~~t 95 (95)
T d2ae8a2 76 EIEAIFKAFSRALGIALTAT 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999998764
Done!