BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035039
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
 pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
 pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Galnac
 pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Galnac
 pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Methyl-Alpha-D-Galactopylanoside
 pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Methyl-Alpha-D-Galactopylanoside
          Length = 432

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 32  DRRYGWVFDEWKDPS 46
           D+R+ WVFD+W+ P+
Sbjct: 276 DQRFKWVFDDWEVPT 290


>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
           Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
           Bound Magnesium, Potassium And Tartrate
 pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
           Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
           Bound Magnesium, Potassium And Tartrate
 pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
           Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
           Bound Magnesium, Potassium And Tartrate
 pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
           Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
           Bound Magnesium, Potassium And Tartrate
          Length = 446

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 5/27 (18%)

Query: 42  WKDPSEEALAGGRGMFCIVPLAKACLK 68
           W++P EE + GG+     +P+   C+K
Sbjct: 374 WQEPDEEVIKGGK-----LPIVDGCVK 395


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,742,519
Number of Sequences: 62578
Number of extensions: 43869
Number of successful extensions: 91
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 2
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)