BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035039
         (75 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 3
           OS=Homo sapiens GN=LRIG3 PE=2 SV=1
          Length = 1119

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   STSNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMF 57
           S +N+ +T++PA   PS LSS+  L DR+ G+V  E     +   + G G F
Sbjct: 841 SITNTDETNLPA-DIPSYLSSQGTLADRQDGYVSSESGSHHQFVTSSGAGFF 891


>sp|Q0TU89|UVRC_CLOP1 UvrABC system protein C OS=Clostridium perfringens (strain ATCC
           13124 / NCTC 8237 / Type A) GN=uvrC PE=3 SV=1
          Length = 620

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 8   SNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVP 61
           S+  +  I ++  P+   S R +  RR+    +E     E  L   +G FCI P
Sbjct: 426 SDYRRFKIKSVKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFP 479


>sp|Q0SW38|UVRC_CLOPS UvrABC system protein C OS=Clostridium perfringens (strain SM101 /
           Type A) GN=uvrC PE=3 SV=1
          Length = 620

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 8   SNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMFCIVP 61
           S+  +  I ++  P+   S R +  RR+    +E     E  L   +G FCI P
Sbjct: 426 SDYRRFKIKSVKGPNDYESMREILSRRFSHGLEEVNKIKERNLEYSKGKFCIFP 479


>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3
           OS=Mus musculus GN=Lrig3 PE=1 SV=1
          Length = 1117

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6   STSNSSKTSIPALSSPSKLSSKRLLFDRRYGWVFDEWKDPSEEALAGGRGMF 57
           S +N+ +T++PA   PS LSS+  L DR+ G++  E     +   + G G F
Sbjct: 841 SITNTDETNLPA-DIPSYLSSQGTLADRQDGYISSESGSHHQFVTSSGGGFF 891


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,486,011
Number of Sequences: 539616
Number of extensions: 780713
Number of successful extensions: 1554
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)