Query 035039
Match_columns 75
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 14:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cci_F Cell division control p 67.8 2.2 7.5E-05 23.4 1.2 20 11-32 10-29 (30)
2 1zld_A PTR TOXA, PTR necrosis 61.9 0.78 2.7E-05 31.3 -1.6 14 46-59 88-101 (118)
3 4rxn_A Rubredoxin; electron tr 36.8 7.9 0.00027 22.5 0.2 16 35-50 9-25 (54)
4 2zvv_Y Cyclin-dependent kinase 28.5 19 0.00065 19.1 0.8 11 24-34 14-24 (26)
5 3hxi_C Eukaryotic translation 27.6 15 0.00051 18.6 0.3 9 27-35 4-12 (21)
6 4f02_C Eukaryotic translation 25.7 23 0.0008 18.8 0.8 14 43-56 13-26 (27)
7 3lyu_A Putative hydrogenase; t 24.6 16 0.00055 22.5 0.0 20 49-68 23-42 (142)
8 2eko_A Histone acetyltransfera 23.7 15 0.00051 22.9 -0.2 11 39-49 57-67 (87)
9 2i7u_A Four-alpha-helix bundle 23.2 12 0.0004 23.1 -0.8 13 38-50 11-23 (62)
10 2ro0_A Histone acetyltransfera 22.6 13 0.00046 23.2 -0.6 11 39-49 66-76 (92)
11 2rnz_A Histone acetyltransfera 22.5 12 0.00041 23.8 -0.9 10 39-48 68-77 (94)
12 2z15_A Protein TOB1; human TOB 22.4 8.9 0.00031 25.5 -1.5 22 39-60 97-119 (130)
13 2nvm_A FDXN element excision c 21.5 36 0.0012 23.1 1.3 19 26-44 44-65 (126)
14 3a1f_A Cytochrome B-245 heavy 20.5 22 0.00077 21.1 0.1 21 49-69 22-42 (186)
No 1
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=67.77 E-value=2.2 Score=23.43 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=12.6
Q ss_pred ccccccCCCCCCcccccceeee
Q 035039 11 SKTSIPALSSPSKLSSKRLLFD 32 (75)
Q Consensus 11 ~k~~~~~lss~~~r~~rRL~fD 32 (75)
-|-+-|.+| .-+..|||+||
T Consensus 10 kkengpp~~--~t~kgrrLvFd 29 (30)
T 2cci_F 10 KKENGPPHS--HTLKGRRLVFD 29 (30)
T ss_pred cccCCCCcc--cccccceeecc
Confidence 344555553 34557899998
No 2
>1zld_A PTR TOXA, PTR necrosis toxin; beta-sandwich, RGD-motif; 1.65A {Pyrenophora tritici-repentis} PDB: 1zle_A
Probab=61.93 E-value=0.78 Score=31.30 Aligned_cols=14 Identities=50% Similarity=1.018 Sum_probs=12.6
Q ss_pred hHHHhcCCCceeeh
Q 035039 46 SEEALAGGRGMFCI 59 (75)
Q Consensus 46 ae~ALaGGRGmFCi 59 (75)
+++||.-|||-||+
T Consensus 88 gdyaliqgrgsfcl 101 (118)
T 1zld_A 88 GDYALIQGRGSFCL 101 (118)
T ss_dssp EEEEECSEEEEEEE
T ss_pred cceeEEeccceEEE
Confidence 56899999999996
No 3
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.84 E-value=7.9 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=11.5
Q ss_pred ccceeeccc-CchHHHh
Q 035039 35 YGWVFDEWK-DPSEEAL 50 (75)
Q Consensus 35 YGWv~DEW~-DPae~AL 50 (75)
=|||||+.+ ||.+..-
T Consensus 9 CGyvYd~~~Gdp~~gi~ 25 (54)
T 4rxn_A 9 CGYIYDPEDGDPDDGVN 25 (54)
T ss_dssp TCCEECTTTCBGGGTBC
T ss_pred CCeEECCCcCCcccCcC
Confidence 389999988 7765433
No 4
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=28.48 E-value=19 Score=19.10 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.7
Q ss_pred ccccceeeeee
Q 035039 24 LSSKRLLFDRR 34 (75)
Q Consensus 24 r~~rRL~fDRR 34 (75)
.++|||+|-.|
T Consensus 14 hsKRRlvf~~r 24 (26)
T 2zvv_Y 14 HSKRRLIFSXX 24 (26)
T ss_pred hhhceEEEEec
Confidence 46789999776
No 5
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=27.58 E-value=15 Score=18.61 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=7.1
Q ss_pred cceeeeeec
Q 035039 27 KRLLFDRRY 35 (75)
Q Consensus 27 rRL~fDRRY 35 (75)
-|++|||-|
T Consensus 4 TrIiYdR~f 12 (21)
T 3hxi_C 4 GRIIYDRKF 12 (26)
T ss_pred eEEEEeHHH
Confidence 478999876
No 6
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=25.70 E-value=23 Score=18.84 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=11.0
Q ss_pred cCchHHHhcCCCce
Q 035039 43 KDPSEEALAGGRGM 56 (75)
Q Consensus 43 ~DPae~ALaGGRGm 56 (75)
+|-.||-++|||.-
T Consensus 13 kditeeimsg~rta 26 (27)
T 4f02_C 13 KDITEEIMSGARTA 26 (27)
T ss_pred hhhHHHHHhcCccc
Confidence 46678999999863
No 7
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=24.58 E-value=16 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.7
Q ss_pred HhcCCCceeehhhhHHHHHH
Q 035039 49 ALAGGRGMFCIVPLAKACLK 68 (75)
Q Consensus 49 ALaGGRGmFCilplAk~l~~ 68 (75)
.++||-|.--+++|+|.+..
T Consensus 23 lIaGG~GiaPl~sm~~~l~~ 42 (142)
T 3lyu_A 23 AIGAYTGIVEVYPIAKAWQE 42 (142)
T ss_dssp EEEETTHHHHHHHHHHHHHH
T ss_pred EEECcCcHHHHHHHHHHHHh
Confidence 46999999999999999875
No 8
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.67 E-value=15 Score=22.86 Aligned_cols=11 Identities=27% Similarity=0.583 Sum_probs=7.7
Q ss_pred eecccCchHHH
Q 035039 39 FDEWKDPSEEA 49 (75)
Q Consensus 39 ~DEW~DPae~A 49 (75)
+|||.+..+-.
T Consensus 57 lDEWV~~~rl~ 67 (87)
T 2eko_A 57 LDEWVTHERLD 67 (87)
T ss_dssp CCEEECTTTBC
T ss_pred cccccCHhHcc
Confidence 59999766543
No 9
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.24 E-value=12 Score=23.11 Aligned_cols=13 Identities=54% Similarity=1.030 Sum_probs=10.6
Q ss_pred eeecccCchHHHh
Q 035039 38 VFDEWKDPSEEAL 50 (75)
Q Consensus 38 v~DEW~DPae~AL 50 (75)
.|.||+.-+++|-
T Consensus 11 lfeewkklaeeaa 23 (62)
T 2i7u_A 11 LFEEWKKLAEEAA 23 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4789998888873
No 10
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.61 E-value=13 Score=23.23 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=7.8
Q ss_pred eecccCchHHH
Q 035039 39 FDEWKDPSEEA 49 (75)
Q Consensus 39 ~DEW~DPae~A 49 (75)
+|||.+.++--
T Consensus 66 lDEWV~~~rl~ 76 (92)
T 2ro0_A 66 LDEWITTDRIN 76 (92)
T ss_dssp SCEEEEGGGEE
T ss_pred cccccCHhHcc
Confidence 59998776543
No 11
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.50 E-value=12 Score=23.84 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.2
Q ss_pred eecccCchHH
Q 035039 39 FDEWKDPSEE 48 (75)
Q Consensus 39 ~DEW~DPae~ 48 (75)
+|||.+.++-
T Consensus 68 lDEWV~~~RI 77 (94)
T 2rnz_A 68 LDEWITTDRI 77 (94)
T ss_dssp TCEEEETTTB
T ss_pred cccccCHHHc
Confidence 4999876653
No 12
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=22.40 E-value=8.9 Score=25.46 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=16.9
Q ss_pred eecccCchHHHh-cCCCceeehh
Q 035039 39 FDEWKDPSEEAL-AGGRGMFCIV 60 (75)
Q Consensus 39 ~DEW~DPae~AL-aGGRGmFCil 60 (75)
+.-|.||.+... .|-.|..|++
T Consensus 97 ltlWvDPgeVs~R~ge~g~i~~l 119 (130)
T 2z15_A 97 LSVWIDPFEVSYQIGEKGPVKVL 119 (130)
T ss_dssp EEEEEETTEEEEEESTTSCEEEE
T ss_pred CEEEECCCEEEEEEcCCCcEEEE
Confidence 445889999887 5666888875
No 13
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=21.51 E-value=36 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.854 Sum_probs=16.2
Q ss_pred ccceeee---eeccceeecccC
Q 035039 26 SKRLLFD---RRYGWVFDEWKD 44 (75)
Q Consensus 26 ~rRL~fD---RRYGWv~DEW~D 44 (75)
.-||+|| -||.|+.--|.+
T Consensus 44 e~~lIfD~erdhYll~~~GW~~ 65 (126)
T 2nvm_A 44 GDRLIIDEQRDQYLWLCCGWDG 65 (126)
T ss_dssp EEEEEEETTTTEEEEEEEEEET
T ss_pred eEEEEEecCCCEEEEEEcceEC
Confidence 6799999 489999988874
No 14
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=20.54 E-value=22 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=18.4
Q ss_pred HhcCCCceeehhhhHHHHHHh
Q 035039 49 ALAGGRGMFCIVPLAKACLKT 69 (75)
Q Consensus 49 ALaGGRGmFCilplAk~l~~~ 69 (75)
-++||-|.=-+++|++.++..
T Consensus 22 lIagG~GItP~~s~l~~l~~~ 42 (186)
T 3a1f_A 22 LVGAGIGVTPFASILKSVWYK 42 (186)
T ss_dssp EEEEGGGHHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHHHHHH
Confidence 479999999999999998865
Done!