Query 035039
Match_columns 75
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 14:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qtma1 c.55.3.5 (A:293-422) E 52.8 0.94 6.9E-05 29.9 -0.8 18 33-53 100-118 (130)
2 d1iroa_ g.41.5.1 (A:) Rubredox 46.0 2.2 0.00016 23.6 0.2 14 35-48 9-23 (53)
3 d2dsxa1 g.41.5.1 (A:1-52) Rubr 45.1 2.3 0.00017 23.4 0.2 14 35-48 9-23 (52)
4 d1dx8a_ g.41.5.1 (A:) Rubredox 34.9 4 0.00029 23.7 0.1 14 35-48 13-27 (70)
5 d3e9va1 d.370.1.1 (A:9-128) NG 31.8 2 0.00014 27.0 -1.8 21 40-60 94-115 (120)
6 d1muka_ e.8.1.4 (A:) Reovirus 31.2 3 0.00022 35.1 -1.3 23 31-53 762-789 (1264)
7 d1knva_ c.52.1.7 (A:) Restrict 27.5 3.1 0.00023 30.2 -1.6 10 31-40 200-209 (290)
8 d1tsja_ d.32.1.7 (A:) Hypothet 25.3 9.3 0.00068 22.0 0.6 13 30-42 107-119 (129)
9 d1cfra_ c.52.1.7 (A:) Restrict 24.2 3.9 0.00029 29.6 -1.6 10 31-40 195-204 (283)
10 d1ny9a_ a.181.1.1 (A:) Transcr 23.1 2.6 0.00019 24.2 -2.3 24 29-52 32-55 (94)
11 d2icsa2 c.1.9.14 (A:55-321) Pu 20.2 19 0.0014 18.7 1.1 18 41-58 16-33 (267)
12 d1y6kr2 b.1.2.1 (R:101-206) In 20.1 15 0.0011 22.9 0.8 23 37-59 57-82 (106)
No 1
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
Probab=52.78 E-value=0.94 Score=29.87 Aligned_cols=18 Identities=44% Similarity=0.903 Sum_probs=15.0
Q ss_pred eeccceeeccc-CchHHHhcCC
Q 035039 33 RRYGWVFDEWK-DPSEEALAGG 53 (75)
Q Consensus 33 RRYGWv~DEW~-DPae~ALaGG 53 (75)
|||| -||+ |+++-|+.-.
T Consensus 100 rRYg---gew~eDa~~RA~~~~ 118 (130)
T d1qtma1 100 RRYG---GEWTEEAGERAALSE 118 (130)
T ss_dssp HHHT---CCCCSCHHHHHHHHH
T ss_pred HhcC---CCCCccHHHHHHHHH
Confidence 8998 8999 9999887543
No 2
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=46.02 E-value=2.2 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.696 Sum_probs=11.0
Q ss_pred ccceeeccc-CchHH
Q 035039 35 YGWVFDEWK-DPSEE 48 (75)
Q Consensus 35 YGWv~DEW~-DPae~ 48 (75)
=|||||+-+ ||...
T Consensus 9 CgyiYd~~~Gd~~~g 23 (53)
T d1iroa_ 9 CGYIYNPEDGDPDNG 23 (53)
T ss_dssp TCCEECTTTCBGGGT
T ss_pred CCcEECcccCCcccC
Confidence 489999998 77654
No 3
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=45.08 E-value=2.3 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.1
Q ss_pred ccceeeccc-CchHH
Q 035039 35 YGWVFDEWK-DPSEE 48 (75)
Q Consensus 35 YGWv~DEW~-DPae~ 48 (75)
=||+||+-+ ||...
T Consensus 9 CgyiYdp~~Gd~~~g 23 (52)
T d2dsxa1 9 CGYEYDPAKGDPDSG 23 (52)
T ss_dssp TCCEECTTTCBGGGT
T ss_pred CCeEECcccCCcccC
Confidence 489999999 77653
No 4
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=34.86 E-value=4 Score=23.66 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.1
Q ss_pred ccceeeccc-CchHH
Q 035039 35 YGWVFDEWK-DPSEE 48 (75)
Q Consensus 35 YGWv~DEW~-DPae~ 48 (75)
=|||||+.+ ||...
T Consensus 13 CgyiYDp~~GD~~~g 27 (70)
T d1dx8a_ 13 CGYIYEPEKGDKFAG 27 (70)
T ss_dssp TCCEECTTTCCTTTT
T ss_pred CCeEECcccCCcccC
Confidence 489999999 87543
No 5
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.76 E-value=2 Score=27.01 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=16.1
Q ss_pred ecccCchHHHh-cCCCceeehh
Q 035039 40 DEWKDPSEEAL-AGGRGMFCIV 60 (75)
Q Consensus 40 DEW~DPae~AL-aGGRGmFCil 60 (75)
.-|.||.|..- .|-+|.+|+|
T Consensus 94 tiWvDP~eVs~R~Ge~g~~~~l 115 (120)
T d3e9va1 94 TLWVDPYEVSYRIGEDGSICVL 115 (120)
T ss_dssp EEEEETTEEEEEESTTSCEEEE
T ss_pred EEEECCCEEEEEecCCCceEEE
Confidence 34889999875 4559999986
No 6
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId: 10891]}
Probab=31.18 E-value=3 Score=35.08 Aligned_cols=23 Identities=22% Similarity=0.719 Sum_probs=18.3
Q ss_pred eeeeccceee-cccCchHH----HhcCC
Q 035039 31 FDRRYGWVFD-EWKDPSEE----ALAGG 53 (75)
Q Consensus 31 fDRRYGWv~D-EW~DPae~----ALaGG 53 (75)
|-+-|||+|| +|.|-+|+ ||-|-
T Consensus 762 Yg~~FGW~YDId~s~~AEYLKLy~l~Gc 789 (1264)
T d1muka_ 762 YGEEFGWKYDIAYDGTAEYLKLYFIFGC 789 (1264)
T ss_dssp HHHTTTCEEEEECSSCEEETTEEEETTE
T ss_pred hhhccCceeecccCCcHHHHHHHHHhcC
Confidence 5677999999 89999985 56663
No 7
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.48 E-value=3.1 Score=30.17 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=8.4
Q ss_pred eeeeccceee
Q 035039 31 FDRRYGWVFD 40 (75)
Q Consensus 31 fDRRYGWv~D 40 (75)
=||||+|+|.
T Consensus 200 PDRRyQ~vhE 209 (290)
T d1knva_ 200 PDRRLQLVHE 209 (290)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 3999999885
No 8
>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]}
Probab=25.35 E-value=9.3 Score=21.97 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=10.7
Q ss_pred eeeeeccceeecc
Q 035039 30 LFDRRYGWVFDEW 42 (75)
Q Consensus 30 ~fDRRYGWv~DEW 42 (75)
-|..||||+-|.+
T Consensus 107 ~~g~~~g~v~D~f 119 (129)
T d1tsja_ 107 PPYREFAWVQDKF 119 (129)
T ss_dssp TTEEEEEEEECTT
T ss_pred cccceEEEEECCC
Confidence 4788999998864
No 9
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter freundii [TaxId: 546]}
Probab=24.18 E-value=3.9 Score=29.55 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=8.4
Q ss_pred eeeeccceee
Q 035039 31 FDRRYGWVFD 40 (75)
Q Consensus 31 fDRRYGWv~D 40 (75)
=||||+|+|.
T Consensus 195 PDRRyQlvhE 204 (283)
T d1cfra_ 195 PDRRLQLAHE 204 (283)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 3999999885
No 10
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=23.08 E-value=2.6 Score=24.23 Aligned_cols=24 Identities=8% Similarity=-0.190 Sum_probs=20.7
Q ss_pred eeeeeeccceeecccCchHHHhcC
Q 035039 29 LLFDRRYGWVFDEWKDPSEEALAG 52 (75)
Q Consensus 29 L~fDRRYGWv~DEW~DPae~ALaG 52 (75)
=+.+++|-|+=.-|.+|+.+++.|
T Consensus 32 ~lv~~H~~~i~~~~~~~s~e~~~~ 55 (94)
T d1ny9a_ 32 DAAEDHRQGIARNHYDCGYEMHTC 55 (94)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 467899999988899999998876
No 11
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}
Probab=20.19 E-value=19 Score=18.75 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.6
Q ss_pred cccCchHHHhcCCCceee
Q 035039 41 EWKDPSEEALAGGRGMFC 58 (75)
Q Consensus 41 EW~DPae~ALaGGRGmFC 58 (75)
.|.+|.+.+|+||--.+|
T Consensus 16 ~~~~~~~~~l~~GvTTv~ 33 (267)
T d2icsa2 16 YYDYPDEIGVKKGVTTVI 33 (267)
T ss_dssp SCCCHHHHTGGGTEEEEE
T ss_pred chhhHHHHHhCCeeEEEE
Confidence 466899999999998887
No 12
>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.12 E-value=15 Score=22.95 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=13.4
Q ss_pred ceeecccCchHH---HhcCCCceeeh
Q 035039 37 WVFDEWKDPSEE---ALAGGRGMFCI 59 (75)
Q Consensus 37 Wv~DEW~DPae~---ALaGGRGmFCi 59 (75)
..|--|+--.|+ --.||.|+||+
T Consensus 57 ~t~~~~~v~~e~F~l~~~~~~gefCV 82 (106)
T d1y6kr2 57 FTFTHKKVKHEQFSLLTSGEVGEFCV 82 (106)
T ss_dssp SCCEEEEESSSEEEEECCSCCSEEEE
T ss_pred ceeEEeeecccEEEecCCCCcceEEE
Confidence 344446533332 13589999997
Done!