Query 035051
Match_columns 75
No_of_seqs 21 out of 23
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_F Protein PET M; photosyn 56.4 13 0.00043 20.6 3.1 20 2-21 9-28 (35)
2 1q90_M Cytochrome B6F complex 54.1 14 0.00049 20.8 3.1 20 2-21 10-29 (39)
3 1i5e_A Uracil phosphoribosyltr 47.6 11 0.00038 25.6 2.3 26 21-46 19-44 (209)
4 3dmp_A Uracil phosphoribosyltr 44.2 13 0.00046 26.0 2.3 26 21-46 26-51 (217)
5 1xtt_A Probable uracil phospho 43.3 15 0.00051 25.7 2.5 28 20-47 17-44 (216)
6 2l95_A Crammer, LP06209P; cyst 41.2 22 0.00076 20.7 2.6 15 29-43 31-45 (80)
7 3b5n_A Synaptobrevin homolog 1 41.1 29 0.00098 19.7 3.1 20 21-40 39-58 (61)
8 2e55_A Uracil phosphoribosyltr 39.8 17 0.0006 25.2 2.3 27 21-47 17-43 (208)
9 1v9s_A Uracil phosphoribosyltr 38.6 19 0.00064 25.0 2.3 27 21-47 18-44 (208)
10 1o5o_A Uracil phosphoribosyltr 37.8 19 0.00067 25.3 2.3 27 21-47 31-57 (221)
11 2ehj_A Uracil phosphoribosyltr 37.3 17 0.00059 25.2 2.0 27 21-47 18-44 (208)
12 1iug_A Putative aspartate amin 37.0 83 0.0029 20.3 5.8 34 11-44 237-270 (352)
13 1n7s_A Vesicle-associated memb 35.4 40 0.0014 19.0 3.1 20 21-40 41-60 (63)
14 1tig_A IF3-C, translation init 34.0 16 0.00055 23.1 1.3 12 34-45 24-35 (94)
15 3arc_X Photosystem II PSBX pro 33.6 40 0.0014 18.9 2.8 13 2-14 5-17 (39)
16 2nps_A VAMP-4, vesicle-associa 33.5 43 0.0015 19.6 3.1 20 21-40 45-64 (74)
17 1yz4_A DUSP15, dual specificit 33.3 84 0.0029 19.2 5.0 20 14-33 101-123 (160)
18 1i96_V Translation initiation 33.1 15 0.00053 23.0 1.1 13 34-46 19-31 (89)
19 4hvk_A Probable cysteine desul 32.7 1E+02 0.0034 19.9 5.5 36 8-43 238-273 (382)
20 1bd3_D Uprtase, uracil phospho 32.6 28 0.00094 24.9 2.5 27 20-46 50-76 (243)
21 1elu_A L-cysteine/L-cystine C- 31.7 1.1E+02 0.0037 20.0 5.6 21 24-44 295-315 (390)
22 2l16_A SEC-independent protein 31.5 42 0.0014 20.5 2.9 34 11-44 13-46 (78)
23 2ygg_A Sodium/hydrogen exchang 30.9 26 0.0009 21.8 1.9 23 21-43 6-28 (70)
24 2crq_A Mitochondrial translati 30.7 19 0.00066 23.4 1.3 12 34-45 32-43 (112)
25 3ro3_B Minsc, peptide of prote 30.6 27 0.00092 17.8 1.6 10 35-44 7-16 (22)
26 3ke3_A Putative serine-pyruvat 30.2 1.3E+02 0.0044 20.4 6.1 37 8-44 256-293 (379)
27 2ife_A Protein (translation in 30.1 20 0.00069 22.9 1.3 12 34-45 30-41 (100)
28 3c4r_A Uncharacterized protein 30.0 31 0.0011 24.1 2.3 34 29-62 51-91 (151)
29 1gl2_A Endobrevin; membrane pr 29.5 29 0.00098 20.0 1.8 20 21-40 46-65 (65)
30 2fyf_A PSAT, phosphoserine ami 28.8 1.4E+02 0.0047 20.2 6.1 21 24-44 296-316 (398)
31 3isl_A Purine catabolism prote 28.7 1.3E+02 0.0044 20.0 6.1 37 8-44 271-308 (416)
32 3lvm_A Cysteine desulfurase; s 28.6 1.3E+02 0.0046 20.1 5.5 36 8-43 266-301 (423)
33 2spc_A Spectrin; cytoskeleton; 28.5 38 0.0013 19.5 2.2 20 28-47 5-24 (107)
34 3hd7_A Vesicle-associated memb 28.4 56 0.0019 19.9 3.1 20 21-40 42-61 (91)
35 3nnk_A Ureidoglycine-glyoxylat 28.4 1.3E+02 0.0045 19.9 6.1 37 8-44 271-308 (411)
36 4eb5_A Probable cysteine desul 27.7 1.3E+02 0.0044 19.6 5.5 34 10-43 240-273 (382)
37 2huf_A Alanine glyoxylate amin 27.3 1.4E+02 0.0047 19.7 5.6 36 9-44 265-301 (393)
38 2yrr_A Aminotransferase, class 26.9 1.3E+02 0.0043 19.3 6.1 34 11-44 239-273 (353)
39 3mc6_A Sphingosine-1-phosphate 26.5 1.7E+02 0.0058 20.6 6.1 30 15-44 334-363 (497)
40 3ecd_A Serine hydroxymethyltra 26.2 1.4E+02 0.0048 19.9 4.9 25 20-44 284-308 (425)
41 2ch1_A 3-hydroxykynurenine tra 26.1 1.4E+02 0.005 19.6 5.6 23 22-44 278-300 (396)
42 3bz1_X Photosystem II PSBX pro 25.6 63 0.0022 19.0 2.8 13 2-14 15-27 (50)
43 1sfc_A VAMP 2, protein (synapt 25.5 66 0.0023 19.9 3.1 20 21-40 67-86 (96)
44 3kgw_A Alanine-glyoxylate amin 25.1 1.5E+02 0.005 19.4 5.6 37 8-44 268-305 (393)
45 2z9v_A Aspartate aminotransfer 24.6 1.6E+02 0.0053 19.5 6.1 34 11-44 254-288 (392)
46 1kmj_A Selenocysteine lyase; p 24.2 1E+02 0.0035 20.2 3.9 39 6-44 280-319 (406)
47 1u5p_A Spectrin alpha chain, b 23.3 64 0.0022 20.3 2.7 19 28-46 5-23 (216)
48 1wyu_B Glycine dehydrogenase s 23.3 2.1E+02 0.007 20.4 5.9 24 21-44 339-362 (474)
49 3ka1_A RBCX protein; chaperone 23.1 40 0.0014 22.9 1.8 16 30-45 94-109 (126)
50 1w23_A Phosphoserine aminotran 23.1 1.6E+02 0.0055 19.1 5.6 21 24-44 260-280 (360)
51 1f16_A Protein (apoptosis regu 23.0 61 0.0021 22.1 2.7 20 3-22 170-189 (192)
52 3l4f_A RHO guanine nucleotide 22.8 1.4E+02 0.0046 18.1 4.2 27 23-49 11-37 (61)
53 2dr1_A PH1308 protein, 386AA l 22.7 1.7E+02 0.0057 19.1 6.0 21 24-44 279-299 (386)
54 3f75_P Toxopain-2, cathepsin L 22.5 51 0.0017 20.8 2.1 16 28-43 46-61 (106)
55 1vjo_A Alanine--glyoxylate ami 21.7 1.8E+02 0.0062 19.2 5.6 22 23-44 292-313 (393)
56 1m32_A 2-aminoethylphosphonate 21.6 1.7E+02 0.0058 18.8 6.1 21 24-44 264-284 (366)
57 1eg5_A Aminotransferase; PLP-d 21.3 1.8E+02 0.006 18.9 5.6 24 21-44 255-278 (384)
58 3n0l_A Serine hydroxymethyltra 21.2 1.9E+02 0.0065 19.2 4.9 25 20-44 276-300 (417)
59 2f93_B Sensory rhodopsin II tr 21.0 35 0.0012 22.8 1.1 32 8-39 69-100 (122)
60 1t3i_A Probable cysteine desul 20.7 1.5E+02 0.0052 19.6 4.3 38 7-44 285-323 (420)
61 4a17_Y RPL37A, 60S ribosomal p 20.6 1.1E+02 0.0038 20.0 3.5 21 26-46 74-94 (103)
No 1
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=56.45 E-value=13 Score=20.57 Aligned_cols=20 Identities=45% Similarity=0.502 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 035051 2 ALTNFILTVAGVSAVVLLLR 21 (75)
Q Consensus 2 AlTNFilTvagV~Av~lLlr 21 (75)
|..-|.+|..|++-.++|+|
T Consensus 9 A~i~~~LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 34568899999999999987
No 2
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=54.09 E-value=14 Score=20.83 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 035051 2 ALTNFILTVAGVSAVVLLLR 21 (75)
Q Consensus 2 AlTNFilTvagV~Av~lLlr 21 (75)
|..-|.||..|++-.++|+|
T Consensus 10 A~i~~~L~LvGla~Gf~LLk 29 (39)
T 1q90_M 10 ALTMVGMTLVGLAIGFVLLR 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44568899999999999887
No 3
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=47.62 E-value=11 Score=25.62 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEES 46 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~ 46 (75)
-+|..-+...||+++..|-.||-+|.
T Consensus 19 lRd~~t~~~~Fr~~~~~l~~ll~~ea 44 (209)
T 1i5e_A 19 IRDKNTGTKEFRELVDEVATLMAFEI 44 (209)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35888899999999999999999873
No 4
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=44.20 E-value=13 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEES 46 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~ 46 (75)
-+|..-+...||+++..|-.||-+|.
T Consensus 26 lRd~~t~~~~Fr~~~~rl~~lL~yEa 51 (217)
T 3dmp_A 26 MRDKDTSTRTFRELLREITLLMGYEI 51 (217)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999973
No 5
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=43.31 E-value=15 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHhHHHhHHHHHHhHHHHHHHHHHHHH
Q 035051 20 LRSDVKQSASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 20 lrsDVrqS~a~fRRN~rhIR~WlEEe~~ 47 (75)
.-+|..-+...||+++..|-.||-+|..
T Consensus 17 ~lRd~~t~~~~Fr~~~~~l~~ll~yEa~ 44 (216)
T 1xtt_A 17 QLRDKYTDQINFRKNLVRLGRILGYEIS 44 (216)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999843
No 6
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=41.20 E-value=22 Score=20.66 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.8
Q ss_pred HHHHHhHHHHHHHHH
Q 035051 29 SIFRRNVKHIRNWLE 43 (75)
Q Consensus 29 a~fRRN~rhIR~WlE 43 (75)
.+|+.|++.|..+=.
T Consensus 31 ~iF~~N~~~I~~hN~ 45 (80)
T 2l95_A 31 RIYAESKARIEEHNR 45 (80)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999987643
No 7
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.05 E-value=29 Score=19.67 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.6
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
..+...+|..|+++.+.+|.
T Consensus 39 s~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 39 ADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999875
No 8
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=39.84 E-value=17 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~~ 47 (75)
-+|..-+...||+++..|-.||-+|..
T Consensus 17 lRd~~t~~~~Fr~~~~~l~~ll~~ea~ 43 (208)
T 2e55_A 17 ARIQDTSAEKLRKTLKELGFMLVYEAL 43 (208)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999999999999843
No 9
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=38.57 E-value=19 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~~ 47 (75)
-+|..-+...||+++..|-.||-+|..
T Consensus 18 lRd~~t~~~~Fr~~~~~l~~ll~~ea~ 44 (208)
T 1v9s_A 18 LRDKRTGPKDFRELAEEVAMLMAYEAM 44 (208)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999999999999833
No 10
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=37.76 E-value=19 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~~ 47 (75)
-+|..-+...||+++..|-.||-+|..
T Consensus 31 lRd~~t~~~~Fr~~~~~l~~ll~yEa~ 57 (221)
T 1o5o_A 31 MRDKNTGPKEFRELLREITLLLAYEAT 57 (221)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999999999999833
No 11
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=37.26 E-value=17 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEEe~~ 47 (75)
-+|..-+...||+++..|-.||-+|..
T Consensus 18 lRd~~t~~~~Fr~~~~~l~~ll~~ea~ 44 (208)
T 2ehj_A 18 MREQDISTKRFRELASEVGSLLTYEAT 44 (208)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 358888999999999999999999833
No 12
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=37.05 E-value=83 Score=20.28 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 11 AGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 11 agV~Av~lLlrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
+++.++.-.+...+.+.....++|.+.++.+|++
T Consensus 237 ~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 270 (352)
T 1iug_A 237 LAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE 270 (352)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555555556666666666654
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=35.43 E-value=40 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.2
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
..+...+|..|+++.+.++.
T Consensus 41 s~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 41 ADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999998875
No 14
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=33.98 E-value=16 Score=23.09 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHH
Q 035051 34 NVKHIRNWLEEE 45 (75)
Q Consensus 34 N~rhIR~WlEEe 45 (75)
=+||++.|||++
T Consensus 24 K~k~a~~FL~~G 35 (94)
T 1tig_A 24 KLRNARKFLEKG 35 (94)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 378999999985
No 15
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=33.57 E-value=40 Score=18.91 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHH
Q 035051 2 ALTNFILTVAGVS 14 (75)
Q Consensus 2 AlTNFilTvagV~ 14 (75)
.|.||++....-+
T Consensus 5 SL~nFl~Sl~aG~ 17 (39)
T 3arc_X 5 SLKGFFIGLLSGA 17 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3789998755433
No 16
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=33.45 E-value=43 Score=19.60 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
..+...+|..|+++.+.++.
T Consensus 45 s~~L~~~s~~F~~~a~~l~r 64 (74)
T 2nps_A 45 SESLSDNATAFSNRSKQLRR 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999875
No 17
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=33.33 E-value=84 Score=19.19 Aligned_cols=20 Identities=0% Similarity=0.056 Sum_probs=9.9
Q ss_pred HHHHHHHHH---hHHHhHHHHHH
Q 035051 14 SAVVLLLRS---DVKQSASIFRR 33 (75)
Q Consensus 14 ~Av~lLlrs---DVrqS~a~fRR 33 (75)
.++++||+. +..++-..+|+
T Consensus 101 ~~~aylm~~~~~~~~~a~~~v~~ 123 (160)
T 1yz4_A 101 IVTAYVMTVTGLGWRDVLEAIKA 123 (160)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555543 55555555553
No 18
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=33.08 E-value=15 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q 035051 34 NVKHIRNWLEEES 46 (75)
Q Consensus 34 N~rhIR~WlEEe~ 46 (75)
=+||++.|||++.
T Consensus 19 K~k~a~~FL~~Gd 31 (89)
T 1i96_V 19 KLGHIKRFLQEGH 31 (89)
T ss_pred HHHHHHHHHHCCC
Confidence 3789999999753
No 19
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=32.65 E-value=1e+02 Score=19.92 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhHHHHHHHHH
Q 035051 8 LTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLE 43 (75)
Q Consensus 8 lTvagV~Av~lLlrsDVrqS~a~fRRN~rhIR~WlE 43 (75)
..++++.++.-++...+.+.....++|.+.++.+|+
T Consensus 238 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (382)
T 4hvk_A 238 PSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL 273 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344445444444444455544444444444444443
No 20
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=32.63 E-value=28 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.8
Q ss_pred HHHhHHHhHHHHHHhHHHHHHHHHHHH
Q 035051 20 LRSDVKQSASIFRRNVKHIRNWLEEES 46 (75)
Q Consensus 20 lrsDVrqS~a~fRRN~rhIR~WlEEe~ 46 (75)
.-+|..-+...||+++..|-.||-+|.
T Consensus 50 ~lRd~~t~~~~Fr~~~~rl~~ll~yEa 76 (243)
T 1bd3_D 50 IIRDKETPKEEFVFYADRLIRLLIEEA 76 (243)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346888999999999999999999984
No 21
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=31.73 E-value=1.1e+02 Score=20.05 Aligned_cols=21 Identities=5% Similarity=0.079 Sum_probs=13.6
Q ss_pred HHHhHHHHHHhHHHHHHHHHH
Q 035051 24 VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 24 VrqS~a~fRRN~rhIR~WlEE 44 (75)
+.+.....++|...++.+|++
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~ 315 (390)
T 1elu_A 295 AEERYQAICQRSEFLWRGLNQ 315 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666654
No 22
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=31.49 E-value=42 Score=20.54 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 11 AGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 11 agV~Av~lLlrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
.+|.|++++=-+++-+-++-+-+=+|.+|....+
T Consensus 13 IlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~ 46 (78)
T 2l16_A 13 IFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKS 46 (78)
T ss_dssp HHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544455655555555555555555544
No 23
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=30.87 E-value=26 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.9
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLE 43 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlE 43 (75)
..|+..--.||++|+-+||+=+-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666899999999997653
No 24
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.67 E-value=19 Score=23.36 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHH
Q 035051 34 NVKHIRNWLEEE 45 (75)
Q Consensus 34 N~rhIR~WlEEe 45 (75)
=+||++.|||++
T Consensus 32 K~k~a~kFLe~G 43 (112)
T 2crq_A 32 KSKQIQQWIEKK 43 (112)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 478999999975
No 25
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=30.59 E-value=27 Score=17.78 Aligned_cols=10 Identities=30% Similarity=1.062 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q 035051 35 VKHIRNWLEE 44 (75)
Q Consensus 35 ~rhIR~WlEE 44 (75)
+-.+|.|+|+
T Consensus 7 vDSV~rWmeD 16 (22)
T 3ro3_B 7 VDSVQRWMED 16 (26)
T ss_pred hHHHHHHHHH
Confidence 4568899987
No 26
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=30.15 E-value=1.3e+02 Score=20.41 Aligned_cols=37 Identities=8% Similarity=-0.005 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHh-HHHhHHHHHHhHHHHHHHHHH
Q 035051 8 LTVAGVSAVVLLLRSD-VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 8 lTvagV~Av~lLlrsD-VrqS~a~fRRN~rhIR~WlEE 44 (75)
..++++.+++-++..+ +..-.+-.+++.+.++..|++
T Consensus 256 ~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 293 (379)
T 3ke3_A 256 DSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD 293 (379)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555443 555556666677777777765
No 27
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=30.07 E-value=20 Score=22.95 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHH
Q 035051 34 NVKHIRNWLEEE 45 (75)
Q Consensus 34 N~rhIR~WlEEe 45 (75)
=+||++.|||++
T Consensus 30 K~k~a~~FL~~G 41 (100)
T 2ife_A 30 KLRSLIRFLEEG 41 (100)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 378999999986
No 28
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6}
Probab=30.01 E-value=31 Score=24.08 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHH-H------HHhhhcCccccc
Q 035051 29 SIFRRNVKHIRNWLEEESTAA-S------KAAENIKPKELE 62 (75)
Q Consensus 29 a~fRRN~rhIR~WlEEe~~aa-s------ka~~~~~pKel~ 62 (75)
.-+.+|--+|..||..++..+ . .+-..+.|.|+-
T Consensus 51 ~al~nNrQkIFRWL~~DT~~~~~ki~~L~PAIlaALP~Err 91 (151)
T 3c4r_A 51 EALARNTQKIFRWVEKDTPDAVEKIQALLPAIEKSMPPLLV 91 (151)
T ss_dssp THHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHhHHHhHHHHhCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 457889999999999987633 2 244555676664
No 29
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.51 E-value=29 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
..+...+|..|+++.+.+|.
T Consensus 46 s~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 46 TEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45677888899999887763
No 30
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=28.83 E-value=1.4e+02 Score=20.24 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=12.8
Q ss_pred HHHhHHHHHHhHHHHHHHHHH
Q 035051 24 VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 24 VrqS~a~fRRN~rhIR~WlEE 44 (75)
+.+..+..+++.+.++.+|++
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~ 316 (398)
T 2fyf_A 296 LDWAVKRTADSSQRLYSWAQE 316 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666556666666666666654
No 31
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=28.70 E-value=1.3e+02 Score=19.96 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHh-HHHhHHHHHHhHHHHHHHHHH
Q 035051 8 LTVAGVSAVVLLLRSD-VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 8 lTvagV~Av~lLlrsD-VrqS~a~fRRN~rhIR~WlEE 44 (75)
...+++.++.-++..+ +.+-.+..++|.+.++..|++
T Consensus 271 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (416)
T 3isl_A 271 TMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308 (416)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444444 666666666666666666655
No 32
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=28.63 E-value=1.3e+02 Score=20.09 Aligned_cols=36 Identities=8% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhHHHHHHHHH
Q 035051 8 LTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLE 43 (75)
Q Consensus 8 lTvagV~Av~lLlrsDVrqS~a~fRRN~rhIR~WlE 43 (75)
..++++.++.-++...+.+-....+++.+.++..|+
T Consensus 266 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555454445555455555555555555555553
No 33
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=28.46 E-value=38 Score=19.51 Aligned_cols=20 Identities=10% Similarity=0.506 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 035051 28 ASIFRRNVKHIRNWLEEEST 47 (75)
Q Consensus 28 ~a~fRRN~rhIR~WlEEe~~ 47 (75)
...|.|.++++-.||.+...
T Consensus 5 lq~F~~d~~~~e~Wl~~~e~ 24 (107)
T 2spc_A 5 LQLYMRDCELAESWMSAREA 24 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998644
No 34
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.41 E-value=56 Score=19.92 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
+.+...+|..|+++.++++.
T Consensus 42 t~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 42 ADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999998875
No 35
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=28.39 E-value=1.3e+02 Score=19.90 Aligned_cols=37 Identities=5% Similarity=0.090 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHh-HHHhHHHHHHhHHHHHHHHHH
Q 035051 8 LTVAGVSAVVLLLRSD-VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 8 lTvagV~Av~lLlrsD-VrqS~a~fRRN~rhIR~WlEE 44 (75)
...+++.++.-++..+ +++.....++|.+.++..|++
T Consensus 271 ~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (411)
T 3nnk_A 271 TALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA 308 (411)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 666666666777777776665
No 36
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=27.74 E-value=1.3e+02 Score=19.62 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHhHHHHHHHHH
Q 035051 10 VAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLE 43 (75)
Q Consensus 10 vagV~Av~lLlrsDVrqS~a~fRRN~rhIR~WlE 43 (75)
.+++.++.-++...+.+-....++|.+.++..|+
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (382)
T 4eb5_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL 273 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3444444434444444444444445555554444
No 37
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=27.30 E-value=1.4e+02 Score=19.75 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHH-hHHHhHHHHHHhHHHHHHHHHH
Q 035051 9 TVAGVSAVVLLLRS-DVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 9 TvagV~Av~lLlrs-DVrqS~a~fRRN~rhIR~WlEE 44 (75)
..+++.++.-.+.. ++.+..+..++|.+.++.+|++
T Consensus 265 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 301 (393)
T 2huf_A 265 LLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD 301 (393)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333 4666666666777777777655
No 38
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=26.94 E-value=1.3e+02 Score=19.26 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHh-HHHhHHHHHHhHHHHHHHHHH
Q 035051 11 AGVSAVVLLLRSD-VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 11 agV~Av~lLlrsD-VrqS~a~fRRN~rhIR~WlEE 44 (75)
+++.++.-.+..+ +.+.....++|.+.++..|++
T Consensus 239 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 273 (353)
T 2yrr_A 239 YALLEALDLVLEEGVAARERRAREVYAWVLEELKA 273 (353)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334333 555555556666666666654
No 39
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=26.54 E-value=1.7e+02 Score=20.59 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 15 AVVLLLRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 15 Av~lLlrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
|...|-..++++...-.++|.+.++.+|++
T Consensus 334 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 334 TMVNMGENGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444556777777888888888888877
No 40
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=26.22 E-value=1.4e+02 Score=19.87 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 20 LRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 20 lrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
+..++++-..-.++|.+.++..|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~L~~ 308 (425)
T 3ecd_A 284 LTDDFKTYIDRVLANAQALGDVLKA 308 (425)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677777777777765
No 41
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=26.13 E-value=1.4e+02 Score=19.65 Aligned_cols=23 Identities=4% Similarity=-0.058 Sum_probs=14.0
Q ss_pred HhHHHhHHHHHHhHHHHHHHHHH
Q 035051 22 SDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 22 sDVrqS~a~fRRN~rhIR~WlEE 44 (75)
..+.+.....+++.+.++.+|++
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~ 300 (396)
T 2ch1_A 278 EGLENQIKRRIECAQILYEGLGK 300 (396)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655
No 42
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=25.56 E-value=63 Score=19.02 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHH
Q 035051 2 ALTNFILTVAGVS 14 (75)
Q Consensus 2 AlTNFilTvagV~ 14 (75)
.|.||+.....-+
T Consensus 15 SL~NFl~SlvaG~ 27 (50)
T 3bz1_X 15 SLKGFFIGLLSGA 27 (50)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3789988755433
No 43
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.52 E-value=66 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHhHHHhHHHHHHhHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRN 40 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~ 40 (75)
..+...++..|+++.+.++.
T Consensus 67 se~L~~~S~~F~k~A~kl~r 86 (96)
T 1sfc_A 67 ADALQAGASQFETSAAKLKR 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999874
No 44
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=25.12 E-value=1.5e+02 Score=19.37 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHHHHHHHHHH-HHHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 8 LTVAGVSAVVL-LLRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 8 lTvagV~Av~l-LlrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
...+++.++.- +....+.+..+..++|.+.++.+|++
T Consensus 268 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 305 (393)
T 3kgw_A 268 TSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE 305 (393)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333 33333666666666777777766665
No 45
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=24.59 E-value=1.6e+02 Score=19.47 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHh-HHHhHHHHHHhHHHHHHHHHH
Q 035051 11 AGVSAVVLLLRSD-VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 11 agV~Av~lLlrsD-VrqS~a~fRRN~rhIR~WlEE 44 (75)
+++.++.-.+... +.+.....++|.+.++..|++
T Consensus 254 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 288 (392)
T 2z9v_A 254 NGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA 288 (392)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 555556666666666666654
No 46
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=24.23 E-value=1e+02 Score=20.23 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHhHHHHHHhHHHHHHHHHH
Q 035051 6 FILTVAGVSAVVLLLRS-DVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 6 FilTvagV~Av~lLlrs-DVrqS~a~fRRN~rhIR~WlEE 44 (75)
-+..++++.++.-.+.. .+.+.....++|.+.++..|++
T Consensus 280 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 319 (406)
T 1kmj_A 280 NTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES 319 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555444434433 3444444555555555555543
No 47
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=23.31 E-value=64 Score=20.29 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 035051 28 ASIFRRNVKHIRNWLEEES 46 (75)
Q Consensus 28 ~a~fRRN~rhIR~WlEEe~ 46 (75)
...|.+++..+..||++-.
T Consensus 5 ~~~F~~~~~~l~~Wl~~~e 23 (216)
T 1u5p_A 5 QQNFNTGIKDFDFWLSEVE 23 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999853
No 48
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=23.28 E-value=2.1e+02 Score=20.41 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
...+++.....++|.+.++..|++
T Consensus 339 ~~~l~~~~~~~~~~~~~l~~~L~~ 362 (474)
T 1wyu_B 339 LEGLKKAAALAVLNARYLKELLKE 362 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777788888888888765
No 49
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=23.14 E-value=40 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 035051 30 IFRRNVKHIRNWLEEE 45 (75)
Q Consensus 30 ~fRRN~rhIR~WlEEe 45 (75)
|=.-|++|.|++||.=
T Consensus 94 I~q~N~e~~Rq~Ler~ 109 (126)
T 3ka1_A 94 IQQANLQQRAQQLERM 109 (126)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4467999999999984
No 50
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=23.09 E-value=1.6e+02 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHhHHHHHHhHHHHHHHHHH
Q 035051 24 VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 24 VrqS~a~fRRN~rhIR~WlEE 44 (75)
+.+.....++|.+.++.+|++
T Consensus 260 ~~~~~~~~~~~~~~l~~~L~~ 280 (360)
T 1w23_A 260 AEAIAKQNEEKAKIIYDTIDE 280 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777754
No 51
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical protein; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 2k7w_A
Probab=22.96 E-value=61 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 035051 3 LTNFILTVAGVSAVVLLLRS 22 (75)
Q Consensus 3 lTNFilTvagV~Av~lLlrs 22 (75)
|.++.+++|||+.+.+.+++
T Consensus 170 w~~~~~~~agv~~~~l~~~~ 189 (192)
T 1f16_A 170 WQTVTIFVAGVLTASLTIWK 189 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 55677888888887776653
No 52
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.79 E-value=1.4e+02 Score=18.13 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred hHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 035051 23 DVKQSASIFRRNVKHIRNWLEEESTAA 49 (75)
Q Consensus 23 DVrqS~a~fRRN~rhIR~WlEEe~~aa 49 (75)
+.|--..-+|.-.+....|||+|..|-
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraR 37 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRAR 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678888899999999997654
No 53
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=22.73 E-value=1.7e+02 Score=19.13 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHhHHHHHHhHHHHHHHHHH
Q 035051 24 VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 24 VrqS~a~fRRN~rhIR~WlEE 44 (75)
+.+.....++|.+.++..|++
T Consensus 279 ~~~~~~~~~~~~~~l~~~L~~ 299 (386)
T 2dr1_A 279 KEKWLEMYEKRAKMVREGVRE 299 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777765
No 54
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=22.49 E-value=51 Score=20.82 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHHHH
Q 035051 28 ASIFRRNVKHIRNWLE 43 (75)
Q Consensus 28 ~a~fRRN~rhIR~WlE 43 (75)
-.+|++|++.|..+=.
T Consensus 46 ~~iF~~Nl~~I~~hN~ 61 (106)
T 3f75_P 46 YAIFKNNLVYIHTHNQ 61 (106)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4789999999987643
No 55
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=21.70 E-value=1.8e+02 Score=19.21 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=14.2
Q ss_pred hHHHhHHHHHHhHHHHHHHHHH
Q 035051 23 DVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 23 DVrqS~a~fRRN~rhIR~WlEE 44 (75)
.+++....+++|.+.++..|++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~L~~ 313 (393)
T 1vjo_A 292 GLANCWQRHQKNVEYLWERLED 313 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666777777776655
No 56
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=21.55 E-value=1.7e+02 Score=18.78 Aligned_cols=21 Identities=10% Similarity=0.195 Sum_probs=11.2
Q ss_pred HHHhHHHHHHhHHHHHHHHHH
Q 035051 24 VKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 24 VrqS~a~fRRN~rhIR~WlEE 44 (75)
+.+.....++|.+.++..|++
T Consensus 264 ~~~~~~~~~~~~~~l~~~L~~ 284 (366)
T 1m32_A 264 VAARHQRYQQNQRSLVAGMRA 284 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 454445555555555555544
No 57
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.28 E-value=1.8e+02 Score=18.91 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=13.7
Q ss_pred HHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 21 RSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 21 rsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
...+++.....++|.+.++..|++
T Consensus 255 ~~~~~~~~~~~~~~~~~l~~~L~~ 278 (384)
T 1eg5_A 255 VEELSEAAKHMEKLRSKLVSGLMN 278 (384)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHhCC
Confidence 344555555566666666666654
No 58
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=21.24 E-value=1.9e+02 Score=19.23 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=16.3
Q ss_pred HHHhHHHhHHHHHHhHHHHHHHHHH
Q 035051 20 LRSDVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 20 lrsDVrqS~a~fRRN~rhIR~WlEE 44 (75)
+..++..-..-.++|.+.++..|.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (417)
T 3n0l_A 276 LSDEWKVYAKQVRTNAQVLANVLMD 300 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3355566666667777777777765
No 59
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=20.95 E-value=35 Score=22.82 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHhHHHHH
Q 035051 8 LTVAGVSAVVLLLRSDVKQSASIFRRNVKHIR 39 (75)
Q Consensus 8 lTvagV~Av~lLlrsDVrqS~a~fRRN~rhIR 39 (75)
+.+++++.+.+.+.+..-++-.-++++++.|.
T Consensus 69 v~lv~LgvvG~~lGR~t~~pL~rLs~~A~aIa 100 (122)
T 2f93_B 69 LLGINLGLVAATLGGDTAASLSTLAAKASRMG 100 (122)
T ss_dssp HHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777777777777764
No 60
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.69 E-value=1.5e+02 Score=19.56 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHH-hHHHhHHHHHHhHHHHHHHHHH
Q 035051 7 ILTVAGVSAVVLLLRS-DVKQSASIFRRNVKHIRNWLEE 44 (75)
Q Consensus 7 ilTvagV~Av~lLlrs-DVrqS~a~fRRN~rhIR~WlEE 44 (75)
+...+++.++.-.+.. .+.+-....++|.+.++..|++
T Consensus 285 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 323 (420)
T 1t3i_A 285 IAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ 323 (420)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455433333332 3555555566666666666654
No 61
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.56 E-value=1.1e+02 Score=20.04 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.3
Q ss_pred HhHHHHHHhHHHHHHHHHHHH
Q 035051 26 QSASIFRRNVKHIRNWLEEES 46 (75)
Q Consensus 26 qS~a~fRRN~rhIR~WlEEe~ 46 (75)
.++..+|+.+|.+|.--|++.
T Consensus 74 ~~a~tv~~~irrl~e~~~~~~ 94 (103)
T 4a17_Y 74 PPAVTAKTTMNRLKKLQEEQA 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999998766643
Done!