Query 035053
Match_columns 74
No_of_seqs 127 out of 285
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b64_A Elongation factor 1-bet 100.0 6.9E-35 2.4E-39 187.2 6.2 71 1-74 21-91 (91)
2 1f60_B Elongation factor EEF1B 100.0 1.4E-34 4.7E-39 186.8 6.6 71 1-74 24-94 (94)
3 1gh8_A Translation elongation 100.0 4E-32 1.4E-36 173.7 5.8 70 1-74 19-88 (89)
4 2yy3_A Elongation factor 1-bet 100.0 4.6E-31 1.6E-35 169.5 5.3 70 1-74 21-91 (91)
5 2raq_A Conserved protein MTH88 40.5 28 0.00096 22.0 3.2 38 33-73 49-87 (97)
6 3bpd_A Uncharacterized protein 39.9 27 0.00091 22.3 3.0 37 33-72 49-86 (100)
7 2x3d_A SSO6206; unknown functi 36.7 34 0.0012 21.7 3.1 38 33-73 48-86 (96)
8 4b1z_M Phosphatase and actin r 20.4 38 0.0013 21.5 1.2 17 45-63 96-113 (115)
9 2ns5_A Partitioning-defective 19.5 1.1E+02 0.0038 18.6 3.1 29 22-52 3-31 (85)
10 2jn4_A Hypothetical protein FI 18.0 10 0.00036 23.7 -1.8 19 2-21 40-58 (87)
No 1
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=100.00 E-value=6.9e-35 Score=187.17 Aligned_cols=71 Identities=62% Similarity=0.951 Sum_probs=67.0
Q ss_pred ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053 1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 74 (74)
Q Consensus 1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi 74 (74)
|++|+++||++++|||.||++|++|+||||||||+.|+++||++|+|+|.|+ |+. |||+||||||++||||
T Consensus 21 l~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd~v~tD~lee~-i~~--~ed~VqSvdI~~~~ki 91 (91)
T 1b64_A 21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ-ITA--FEDYVQSMDVAAFNKI 91 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHH-HTT--CTTTEEEEEESCCBCC
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECCccChHHHHHH-HHh--ccCceeEEEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999998665 555 9999999999999997
No 2
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=100.00 E-value=1.4e-34 Score=186.80 Aligned_cols=71 Identities=42% Similarity=0.750 Sum_probs=67.1
Q ss_pred ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053 1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 74 (74)
Q Consensus 1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi 74 (74)
|++|+++||++++|||+||++|++|+||||+|||++|+|+||++|+|+|.|. |+. |||+||||||++||||
T Consensus 24 l~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd~~~tD~lee~-i~~--~ed~VqSvdI~~~~ki 94 (94)
T 1f60_B 24 LEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS-IEE--DEDHVQSTDIAAMQKL 94 (94)
T ss_dssp HHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHH-HHT--CTTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECCccChHHHHHH-HHh--ccCceeEEEEEEEEcC
Confidence 6899999999999999999999999999999999999999999999998665 555 9999999999999997
No 3
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=99.97 E-value=4e-32 Score=173.70 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=65.6
Q ss_pred ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053 1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 74 (74)
Q Consensus 1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi 74 (74)
|++|+++||++.++||.||++|++|+|||||||||.|+++|+++|+|++.|. |+. ||| |||+||++||||
T Consensus 19 l~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~-i~~--~e~-Vqsvdv~~~~ri 88 (89)
T 1gh8_A 19 LEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEES-LSG--IEG-VSNIEVTDVRRL 88 (89)
T ss_dssp HHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHH-HTT--SCS-SEEEEEEEEEEC
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHH-Hhc--cCC-ccEEEEEEEEec
Confidence 6899999999999999999999999999999999999999999999998665 555 998 999999999996
No 4
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.6e-31 Score=169.48 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=65.2
Q ss_pred ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCcc-ChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053 1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLV-SVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 74 (74)
Q Consensus 1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkV-s~ddl~ee~i~~e~~ed~VQS~Di~afnKi 74 (74)
|++|+++||++.++||.||++|++|+|||||||||.|+++|+++ |+|++.|. |+. || +|||+||++||||
T Consensus 21 l~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~-i~~--~e-~VqSvdV~~~~ri 91 (91)
T 2yy3_A 21 LDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEK-FEE--VE-NVESAEVETVSRI 91 (91)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHH-HHH--ST-TEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHH-Hhc--CC-CceEEEEEEEEcC
Confidence 68999999999999999999999999999999999999999999 99998665 555 98 5999999999986
No 5
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=40.55 E-value=28 Score=22.05 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=28.7
Q ss_pred EEEEEEEecCccChhhhhhhhhcccCCCCceeeee-eecccc
Q 035053 33 LQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD-IVAFNK 73 (74)
Q Consensus 33 Lqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~D-i~afnK 73 (74)
.-+..+||.+...-|++.+- | |.+..-+-|+| ++|=.+
T Consensus 49 e~lkitiEG~~id~d~I~~~-I--E~~Gg~IHSIDEVvaG~~ 87 (97)
T 2raq_A 49 ENIKVTIQGNDLDFDEITRA-I--ESYGGSIHSVDEVVAGRT 87 (97)
T ss_dssp EEEEEEEECSSCCHHHHHHH-H--HHTTCEEEEEEEEEEESS
T ss_pred cEEEEEEEecCCCHHHHHHH-H--HHcCCeEEeeeeeeecce
Confidence 34577899999999988664 3 44888999999 776443
No 6
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=39.95 E-value=27 Score=22.32 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.0
Q ss_pred EEEEEEEecCccChhhhhhhhhcccCCCCceeeee-eeccc
Q 035053 33 LQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD-IVAFN 72 (74)
Q Consensus 33 Lqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~D-i~afn 72 (74)
.-+..+||.+...-|++.+- | |.+..-|-|+| +++=.
T Consensus 49 e~lkItIEG~dIdfd~I~~~-I--E~~GgvIHSIDEVvaG~ 86 (100)
T 3bpd_A 49 ENIKITILGNNLDYEQIKGV-I--EDMGGVIHSVDEVVAGK 86 (100)
T ss_dssp EEEEEEEEEEEECHHHHHHH-H--HTTTCEEEEEEEEEEES
T ss_pred cEEEEEEEecCCCHHHHHHH-H--HHcCCeEEeeeeeeecc
Confidence 34577899999999988664 3 44888999999 76533
No 7
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=36.73 E-value=34 Score=21.66 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=28.7
Q ss_pred EEEEEEEecCccChhhhhhhhhcccCCCCceeeee-eecccc
Q 035053 33 LQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD-IVAFNK 73 (74)
Q Consensus 33 Lqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~D-i~afnK 73 (74)
.-+..+||.+...-|++.+- | |.+..-+.|+| ++|=.+
T Consensus 48 e~lkItIEG~~idfd~I~~~-I--E~~Gg~IHSIDEVvaG~~ 86 (96)
T 2x3d_A 48 MGLMIIIEGTSLNFDDIRKM-L--EEEGCAIHSIDEVVSGNR 86 (96)
T ss_dssp EEEEEEEEESSCCHHHHHHH-H--HHTTCEEEEEEEEEEESS
T ss_pred cEEEEEEEecCCCHHHHHHH-H--HHcCCeEEeeeeeeeccc
Confidence 34577899999999988664 3 44888999999 766443
No 8
>4b1z_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP; 3.30A {Mus musculus}
Probab=20.41 E-value=38 Score=21.47 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=12.9
Q ss_pred Chhhhhhhhhc-ccCCCCce
Q 035053 45 SVDSLIEEHLT-VEPCNEYV 63 (74)
Q Consensus 45 s~ddl~ee~i~-~e~~ed~V 63 (74)
++++|++..|- . |+|||
T Consensus 96 ~~~EL~ek~ILi~--f~~yv 113 (115)
T 4b1z_M 96 TVEELRERKILIR--FSDYV 113 (115)
T ss_dssp CHHHHHHTTCSCS--TTSST
T ss_pred CHHHHHHcCchhh--hhccc
Confidence 56788888663 6 99997
No 9
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=19.48 E-value=1.1e+02 Score=18.62 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=23.9
Q ss_pred eeeeeeeeeeeEEEEEEEecCccChhhhhhh
Q 035053 22 KLVPVGYGIKKLQIMITIVDDLVSVDSLIEE 52 (74)
Q Consensus 22 Klvpv~yGikKLqi~cvveDdkVs~ddl~ee 52 (74)
..+.|.||=.++.++| .|.+..+.+|.++
T Consensus 3 MKvtV~fg~~~vvVPC--~dg~~tV~~L~~~ 31 (85)
T 2ns5_A 3 FKVTVCFGRTRVDVPC--GDGRMKVFSLIQQ 31 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSSCCCHHHHHHH
T ss_pred cEEEEEECCEEEEEEC--CCCcccHHHHHHH
Confidence 4678899999999999 5677788888776
No 10
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=17.98 E-value=10 Score=23.69 Aligned_cols=19 Identities=47% Similarity=0.903 Sum_probs=15.3
Q ss_pred hHHHHhhhccccCceeeccc
Q 035053 2 KKLEEAVRSVEMPGLFWGAS 21 (74)
Q Consensus 2 ~~le~~Vr~I~~dGL~WG~s 21 (74)
+.||+.|-+++.+++ ||..
T Consensus 40 KDLEE~VVs~E~~~~-WGG~ 58 (87)
T 2jn4_A 40 KDLEELIVEMENPAL-WGGK 58 (87)
T ss_dssp TTEEEEEEEESSSSS-CSSE
T ss_pred Ccchhheeeeecccc-cCcE
Confidence 468888889998887 9974
Done!