BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035056
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana
GN=PDIL5-4 PE=2 SV=1
Length = 480
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
M+ ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT
Sbjct: 38 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGT 95
>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp.
japonica GN=PDIL5-4 PE=2 SV=1
Length = 485
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
MV EL+NYL V TST+VIVD+S+DG+FLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MVFLFGMELSNYLAVNTSTSVIVDRSSDGEFLRIDFNLSFPALSCEFASVDVSDVLGT 95
>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana
GN=PDIL5-3 PE=2 SV=1
Length = 483
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGT 58
M+ EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT
Sbjct: 38 MMFLFGMELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGT 95
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Danio rerio GN=ergic3 PE=2 SV=1
Length = 383
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
M+ EL YLT + VD S GD LRI+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSIDAMDVAG 93
>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1
Length = 390
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
++ +L E NY V +IV+ S GD + I+FN++FP +PC+ ++DV +V G
Sbjct: 38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDVLDVSG 93
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
Length = 384
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
M+ EL YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEIYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAG 93
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus laevis GN=ergic3 PE=2 SV=1
Length = 389
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
M+ EL YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 38 MLILFFSELQYYLTKEVYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAG 93
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Bos taurus GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
YLT + VDKS GD L+I+ N+ FP +PC + SID +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSIDAMDVAG 93
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Mus musculus GN=Ergic3 PE=2 SV=1
Length = 383
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Homo sapiens GN=ERGIC3 PE=1 SV=1
Length = 383
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
YLT + VDKS GD L+I+ ++ FP +PC + SID +V G
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSIDAMDVAG 93
>sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2
Length = 415
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 4 FILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDV 52
++ E + +V T ++VD+ L ++ +++FPS+PC+ ++D+
Sbjct: 40 LLVNEWGQFNSVVTRPQLVVDRDRHAK-LELNMDVTFPSMPCDLVNLDI 87
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment
protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3
SV=1
Length = 383
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
Y + + VD +T G+ L+I+ +++F LPC + S+D +V G
Sbjct: 48 YFSTDIHHELFVD-TTRGEKLKINMDITFHHLPCAYLSLDAMDVSG 92
>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Homo sapiens GN=ERGIC1 PE=1 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 4 FILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
L EL ++T + VD G + + N+S P+L CE +D+ + +G
Sbjct: 39 LFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMG 94
>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Mus musculus GN=Ergic1 PE=1 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 4 FILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
L EL ++T + VD G + + N+S P+L CE +D+ + +G
Sbjct: 39 LFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMG 94
>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Xenopus laevis GN=ergic1 PE=2 SV=1
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 2 VTFI-LQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
+TF+ L EL ++ + VD G + + N++ P+LPCE +D+ + +G
Sbjct: 36 ITFLFLSELTGFIANEIVNELYVDDPDKDSGGKIDVTLNVTLPNLPCEVVGLDIQDEMG 94
>sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Danio rerio GN=ergic1 PE=2 SV=1
Length = 290
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 1 MVTFILQELNNYLTVTTSTAVIVDK--STDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
M+ L EL ++ + VD G + + N+S P+L C+ +D+ + +G
Sbjct: 36 MLFLFLSELTGFIATEIVNELYVDDPDKDSGGKIDVSLNISLPNLHCDLVGLDIQDEMG 94
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 24 DKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCS 69
D D+L + ++ S+P+LP + S+V GT + QF+ S
Sbjct: 426 DVPRTADYLEVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLS 471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,586,742
Number of Sequences: 539616
Number of extensions: 703088
Number of successful extensions: 1606
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 19
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)