Query 035056
Match_columns 74
No_of_seqs 103 out of 390
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1brv_A Protein G, BRSV-G regio 42.7 5.8 0.0002 18.9 0.2 10 39-48 10-19 (32)
2 2ccv_A Helix pomatia agglutini 39.6 16 0.00055 21.2 1.8 32 30-61 31-62 (101)
3 3ku7_A MINE, cell division top 21.8 93 0.0032 17.4 2.9 31 9-42 49-80 (80)
4 3ctl_A D-allulose-6-phosphate 19.6 37 0.0013 22.2 1.1 14 43-58 24-37 (231)
5 1ogp_A Sulfite oxidase; oxidor 17.4 1.3E+02 0.0045 21.3 3.6 28 33-62 338-365 (393)
6 3inp_A D-ribulose-phosphate 3- 15.8 56 0.0019 21.7 1.2 15 44-60 53-67 (246)
7 3cu2_A Ribulose-5-phosphate 3- 15.2 66 0.0022 21.1 1.4 15 44-60 39-53 (237)
8 1tqx_A D-ribulose-5-phosphate 13.6 76 0.0026 20.7 1.4 13 44-58 31-43 (227)
9 4en2_M AP-1 complex subunit MU 13.3 3.1E+02 0.01 18.1 5.0 36 36-72 153-188 (266)
10 2a9d_A Sulfite oxidase; molybd 13.2 2E+02 0.0069 20.2 3.6 29 34-62 319-347 (372)
No 1
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=42.67 E-value=5.8 Score=18.93 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=8.0
Q ss_pred EEccccceee
Q 035056 39 SFPSLPCEFA 48 (74)
Q Consensus 39 tfp~~pC~~l 48 (74)
+||.+||+.-
T Consensus 10 ~l~~VPCsiC 19 (32)
T 1brv_A 10 TLPYVPCSTC 19 (32)
T ss_pred cccccccccc
Confidence 5899999853
No 2
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=39.64 E-value=16 Score=21.18 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=26.7
Q ss_pred ceEEEEEeEEEccccceeeeeeeeecCCceee
Q 035056 30 DFLRIDFNMSFPSLPCEFASIDVSNVLGTVSY 61 (74)
Q Consensus 30 ~~l~In~DItfp~~pC~~lsvDv~D~~G~~~~ 61 (74)
....|.|+-.|+..|.-.+++...|.....+.
T Consensus 31 ~~~~V~F~~~F~~~P~V~v~l~~lD~~~~~n~ 62 (101)
T 2ccv_A 31 LAKNITFASPYCRPPVVLLSITQLDVEQSQNL 62 (101)
T ss_dssp EEEEEECSSCCSSCCEEEEEEEEEEECTTSCC
T ss_pred EEEEeEeCcccCCCCEEEEEeEEEecCCCccE
Confidence 45789999999999999999999998755333
No 3
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=21.84 E-value=93 Score=17.38 Aligned_cols=31 Identities=10% Similarity=0.338 Sum_probs=16.6
Q ss_pred hhhccccceEEEEEEcC-CCCCceEEEEEeEEEcc
Q 035056 9 LNNYLTVTTSTAVIVDK-STDGDFLRIDFNMSFPS 42 (74)
Q Consensus 9 ~~~y~~~~~~~~l~VD~-~~~~~~l~In~DItfp~ 42 (74)
+..|..+ +++.|.- .++++.--+.+||++|+
T Consensus 49 IskYv~i---d~v~V~l~e~~~~~~vLe~nI~lp~ 80 (80)
T 3ku7_A 49 IQKYTKS---SDIHFKTLDSNQSVETIEVEIILPR 80 (80)
T ss_dssp HHHHHCC---CEEEEECC---CCEEEEEEEEECC-
T ss_pred HHHHcCc---cceEEEEEecCCCEEEEEEEeecCC
Confidence 4456664 3555655 44435566677777774
No 4
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=19.59 E-value=37 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=11.1
Q ss_pred ccceeeeeeeeecCCc
Q 035056 43 LPCEFASIDVSNVLGT 58 (74)
Q Consensus 43 ~pC~~lsvDv~D~~G~ 58 (74)
.-++++|+|++| |.
T Consensus 24 ~gad~lHvDvmD--G~ 37 (231)
T 3ctl_A 24 SHADYFHIDIMD--GH 37 (231)
T ss_dssp TTCSCEEEEEEC--SS
T ss_pred cCCCEEEEEEEe--Cc
Confidence 457889999998 55
No 5
>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1
Probab=17.42 E-value=1.3e+02 Score=21.30 Aligned_cols=28 Identities=4% Similarity=-0.025 Sum_probs=20.4
Q ss_pred EEEEeEEEccccceeeeeeeeecCCceeec
Q 035056 33 RIDFNMSFPSLPCEFASIDVSNVLGTVSYS 62 (74)
Q Consensus 33 ~In~DItfp~~pC~~lsvDv~D~~G~~~~~ 62 (74)
.=++++..+. |..|-+.++|.+|..|-.
T Consensus 338 ~W~~~~~~~~--~~~i~vRA~D~~gn~QP~ 365 (393)
T 1ogp_A 338 LFEATIDVSQ--TTEVIAKAVDSAANVQPE 365 (393)
T ss_dssp EEEEEEEESS--CEEEEEEEEETTCCBCCS
T ss_pred EEEEEEecCC--CeEEEEEEEcCCCCcCCC
Confidence 3344554433 999999999999987743
No 6
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=15.84 E-value=56 Score=21.72 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=11.2
Q ss_pred cceeeeeeeeecCCcee
Q 035056 44 PCEFASIDVSNVLGTVS 60 (74)
Q Consensus 44 pC~~lsvDv~D~~G~~~ 60 (74)
-++++|+|++| |.-.
T Consensus 53 G~d~lHvDVmD--g~FV 67 (246)
T 3inp_A 53 GADNIHFDVMD--NHYV 67 (246)
T ss_dssp TCCCEEEEEEB--SSSS
T ss_pred CCCEEEEEecC--CCcC
Confidence 46789999999 5433
No 7
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=15.16 E-value=66 Score=21.14 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.7
Q ss_pred cceeeeeeeeecCCcee
Q 035056 44 PCEFASIDVSNVLGTVS 60 (74)
Q Consensus 44 pC~~lsvDv~D~~G~~~ 60 (74)
.+.++|+|++| |...
T Consensus 39 gad~lhvDvmD--G~fv 53 (237)
T 3cu2_A 39 QINVLHFDIAD--GQFS 53 (237)
T ss_dssp TCCEEEEEEEB--SSSS
T ss_pred CCCEEEEEEec--Cccc
Confidence 47889999998 7643
No 8
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=13.65 E-value=76 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.9
Q ss_pred cceeeeeeeeecCCc
Q 035056 44 PCEFASIDVSNVLGT 58 (74)
Q Consensus 44 pC~~lsvDv~D~~G~ 58 (74)
-|+++|+|++| |.
T Consensus 31 g~d~iHvDvmD--g~ 43 (227)
T 1tqx_A 31 GAEWIHLDVMD--MH 43 (227)
T ss_dssp TCSEEEEEEEB--SS
T ss_pred CCCEEEEEEEe--CC
Confidence 58899999998 55
No 9
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=13.26 E-value=3.1e+02 Score=18.07 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=23.4
Q ss_pred EeEEEccccceeeeeeeeecCCceeecccCCEEEEEE
Q 035056 36 FNMSFPSLPCEFASIDVSNVLGTVSYSSCQFLCSMVL 72 (74)
Q Consensus 36 ~DItfp~~pC~~lsvDv~D~~G~~~~~i~~~i~k~~~ 72 (74)
+.|++| +|=...+..+.-..|+...+..++.--|++
T Consensus 153 V~I~IP-~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I 188 (266)
T 4en2_M 153 VEIHIP-VPNDADSPKFKTTVGSVKWVPENSEIVWSV 188 (266)
T ss_dssp EEEEEE-CCTTCEEEEEEESSSEEEEETTTTEEEEEE
T ss_pred EEEEEC-CCCCcCcceEEecCceEEEeccCCEEEEEE
Confidence 334443 333344555666779988888888888865
No 10
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Probab=13.18 E-value=2e+02 Score=20.18 Aligned_cols=29 Identities=3% Similarity=-0.165 Sum_probs=21.8
Q ss_pred EEEeEEEccccceeeeeeeeecCCceeec
Q 035056 34 IDFNMSFPSLPCEFASIDVSNVLGTVSYS 62 (74)
Q Consensus 34 In~DItfp~~pC~~lsvDv~D~~G~~~~~ 62 (74)
-++++.++.-.++.+-+.++|.+|..|-.
T Consensus 319 W~~~~~~~~g~~~~i~~RA~D~~g~~QP~ 347 (372)
T 2a9d_A 319 WELTVPVEAGTELEIVCKAVDSSYNVQPD 347 (372)
T ss_dssp EEEEEEECTTCEEEEEEEEEETTCCBCCS
T ss_pred EEEeEEcCCCCEEEEEEEEEcCCCCcCCC
Confidence 45555665555899999999999987743
Done!