BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035061
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1
          Length = 1376

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 25  IPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSP------NFKKVKHLKQIPYRG 73
           +P P   T + GAK S + +++   +V + YQ P       + KVK   Q  Y+G
Sbjct: 508 LPIPPSETSDSGAKLSLSALNEDCDQVTRCYQEPKRTPGVTYIKVKPQSQDQYKG 562


>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana
           GN=At3g49140 PE=1 SV=2
          Length = 499

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAK 38
           +I +D LGFD+R+ C    +  +R  F T  T E+ A+
Sbjct: 443 LIGIDSLGFDLRL-CAGAKIESLRFAFSTRATSEENAE 479


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,451,629
Number of Sequences: 539616
Number of extensions: 941929
Number of successful extensions: 2058
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2058
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)