Query 035061
Match_columns 74
No_of_seqs 102 out of 104
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2arz_A Hypothetical protein PA 99.3 1.2E-12 4.1E-17 91.2 2.3 47 1-52 195-241 (247)
2 3gas_A Heme oxygenase; FMN-bin 99.0 3.8E-10 1.3E-14 82.2 4.8 47 1-51 35-81 (259)
3 3dnh_A Uncharacterized protein 98.8 1.2E-09 4E-14 78.3 2.3 40 1-48 216-255 (258)
4 3swj_A CHUZ, putative uncharac 98.8 3.6E-09 1.2E-13 76.1 3.4 43 1-48 36-78 (251)
5 1unn_C POL IV, DNA polymerase 77.5 1.2 4.1E-05 27.4 1.9 32 25-56 11-42 (115)
6 3k9o_B Ubiquitin, UBB+1; E2-25 77.0 5.1 0.00018 23.2 4.6 35 8-45 1-35 (96)
7 2lhu_A Mybpc3 protein; cardiac 62.5 2.4 8.2E-05 28.7 0.9 58 7-64 15-100 (124)
8 3mtn_B UBA80, ubcep1, ubiquiti 62.3 18 0.00061 20.0 4.8 34 9-45 4-37 (85)
9 2asw_A Hypothetical protein AF 62.2 6.1 0.00021 19.3 2.3 29 19-47 22-50 (56)
10 1sif_A Ubiquitin; hydrophobic 61.9 17 0.00057 21.1 4.5 36 7-45 8-43 (88)
11 3a9j_A Ubiquitin; protein comp 59.9 18 0.00062 19.4 4.5 34 9-45 1-34 (76)
12 2v3s_A Serine/threonine-protei 59.9 16 0.00053 23.7 4.4 35 9-43 5-39 (96)
13 3q3f_A Ribonuclease/ubiquitin 56.8 22 0.00076 24.4 5.1 40 3-45 100-139 (189)
14 1ndd_A NEDD8, protein (ubiquit 55.5 22 0.00076 19.0 4.7 34 9-45 1-34 (76)
15 3n3k_B Ubiquitin; hydrolase, p 54.9 19 0.00064 20.0 3.8 34 9-45 4-37 (85)
16 4hpq_A ATG31, KLTH0C07942P; au 53.9 4.5 0.00015 25.0 1.0 12 19-30 6-17 (69)
17 2pjh_A Protein NPL4, nuclear p 52.2 14 0.00048 21.8 3.0 45 9-57 5-52 (80)
18 2dzi_A Ubiquitin-like protein 51.8 28 0.00095 19.0 4.4 34 8-44 7-40 (81)
19 3dbh_I NEDD8; cell cycle, acti 51.0 30 0.001 19.3 4.8 35 8-45 12-46 (88)
20 3v6c_B Ubiquitin; structural g 50.1 34 0.0012 19.6 4.8 36 7-45 16-51 (91)
21 1ik9_C DNA ligase IV; DNA END 45.3 7.4 0.00025 20.7 0.9 19 26-45 17-35 (37)
22 1wf9_A NPL4 family protein; be 43.9 29 0.00099 21.0 3.6 34 9-45 8-41 (107)
23 1yx5_B Ubiquitin; proteasome, 42.5 44 0.0015 19.4 4.2 34 9-45 1-34 (98)
24 2bwf_A Ubiquitin-like protein 42.5 40 0.0014 18.2 4.1 33 9-45 5-37 (77)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 40.2 48 0.0016 18.5 4.0 34 8-44 7-40 (87)
26 3nnk_A Ureidoglycine-glyoxylat 38.6 30 0.001 23.5 3.4 44 5-48 344-387 (411)
27 4hcn_B Polyubiquitin, ubiquiti 37.7 61 0.0021 18.9 4.6 35 8-45 22-56 (98)
28 2wyq_A HHR23A, UV excision rep 37.7 53 0.0018 18.2 4.4 34 8-44 5-38 (85)
29 4ava_A Lysine acetyltransferas 37.6 43 0.0015 22.7 4.0 44 5-50 285-330 (333)
30 3phx_B Ubiquitin-like protein 37.3 52 0.0018 18.0 4.8 33 9-44 5-37 (79)
31 4fbj_B NEDD8; effector-HOST ta 37.3 59 0.002 18.6 4.6 33 9-44 1-33 (88)
32 4f4y_A POL IV, DNA polymerase 36.8 24 0.00081 25.8 2.8 36 19-54 244-279 (362)
33 1qz9_A Kynureninase; kynurenin 36.5 99 0.0034 21.1 5.7 39 21-61 372-410 (416)
34 3b08_A Polyubiquitin-C, ubiqui 35.0 74 0.0025 19.2 4.5 34 9-45 1-34 (152)
35 1v86_A DNA segment, CHR 7, way 34.8 66 0.0023 18.9 4.2 33 9-45 18-50 (95)
36 2w7n_A TRFB transcriptional re 34.7 33 0.0011 21.6 2.9 27 39-65 49-76 (101)
37 4dwf_A HLA-B-associated transc 34.2 65 0.0022 18.1 4.4 33 9-44 6-38 (90)
38 1jx4_A DNA polymerase IV (fami 33.6 34 0.0011 24.5 3.1 37 19-55 243-279 (352)
39 4eew_A Large proline-rich prot 32.4 69 0.0024 17.9 4.4 33 9-44 18-50 (88)
40 2kzr_A Ubiquitin thioesterase 32.3 49 0.0017 18.9 3.2 32 9-44 1-33 (86)
41 2aq4_A DNA repair protein REV1 32.1 73 0.0025 23.7 4.8 36 19-54 317-352 (434)
42 3isl_A Purine catabolism prote 31.7 39 0.0013 23.0 3.0 43 6-48 345-387 (416)
43 3vdz_A Ubiquitin-40S ribosomal 31.4 88 0.003 18.8 4.8 35 8-45 35-69 (111)
44 2ojr_A Ubiquitin; lanthide-bin 31.3 87 0.003 18.8 4.7 35 8-45 35-69 (111)
45 3kgw_A Alanine-glyoxylate amin 30.5 27 0.00091 23.5 2.0 43 6-48 343-385 (393)
46 2idl_A Hypothetical protein; c 30.5 68 0.0023 20.1 3.9 55 8-64 56-112 (117)
47 3gqc_A DNA repair protein REV1 30.2 69 0.0024 25.0 4.5 36 19-54 381-416 (504)
48 1wgd_A Homocysteine-responsive 29.4 84 0.0029 18.0 4.7 36 8-44 7-42 (93)
49 3crv_A XPD/RAD3 related DNA he 29.3 20 0.0007 27.1 1.4 19 19-38 465-483 (551)
50 2ch1_A 3-hydroxykynurenine tra 29.3 37 0.0013 23.0 2.6 43 6-48 338-380 (396)
51 2hj8_A Interferon-induced 17 k 29.1 83 0.0029 17.9 4.1 34 8-44 4-37 (88)
52 3bq0_A POL IV, DBH, DNA polyme 29.1 30 0.001 24.8 2.2 36 19-54 244-279 (354)
53 3rt3_B Ubiquitin-like protein 28.5 1.1E+02 0.0037 19.0 4.8 35 8-45 2-36 (159)
54 4f4y_A POL IV, DNA polymerase 28.2 1.1E+02 0.0037 22.2 5.1 41 9-50 284-324 (362)
55 3zcc_A HAMP, osmolarity sensor 27.9 42 0.0014 18.3 2.3 29 19-47 24-52 (114)
56 1ghh_A DINI, DNA-damage-induci 27.8 47 0.0016 20.4 2.7 17 35-51 57-73 (81)
57 2kan_A Uncharacterized protein 27.4 98 0.0033 18.1 4.6 33 8-44 15-47 (94)
58 3h14_A Aminotransferase, class 27.2 65 0.0022 21.9 3.5 49 5-57 336-387 (391)
59 1yqb_A Ubiquilin 3; structural 26.3 1.1E+02 0.0036 18.2 4.4 32 9-44 23-54 (100)
60 2huf_A Alanine glyoxylate amin 25.9 38 0.0013 22.9 2.1 43 5-47 337-379 (393)
61 1x60_A Sporulation-specific N- 25.8 92 0.0031 17.3 3.8 36 7-46 33-68 (79)
62 2g0i_A Hypothetical protein SM 24.8 1.5E+02 0.0052 19.6 5.0 55 8-65 86-142 (145)
63 2kdb_A Homocysteine-responsive 24.6 1E+02 0.0035 18.6 3.8 35 8-43 23-57 (99)
64 1v2y_A 3300001G02RIK protein; 23.6 1.4E+02 0.0047 18.5 4.4 36 9-47 8-43 (105)
65 2bps_A YUKD protein; ubiquitin 23.4 46 0.0016 20.2 2.0 27 18-54 16-42 (81)
66 1uel_A HHR23B, UV excision rep 23.3 1.2E+02 0.004 17.5 4.4 33 9-44 1-33 (95)
67 4dez_A POL IV 1, DNA polymeras 23.2 17 0.00059 26.1 0.0 30 25-54 251-280 (356)
68 1uta_A FTSN, MSGA, cell divisi 22.7 1.1E+02 0.0039 17.2 4.5 35 7-45 33-67 (81)
69 1jx4_A DNA polymerase IV (fami 22.4 1.6E+02 0.0055 20.9 5.0 41 9-50 284-324 (352)
70 1wx7_A Ubiquilin 3; ubiquitin- 22.4 1.3E+02 0.0044 17.7 4.7 33 9-45 18-50 (106)
71 1t94_A Polymerase (DNA directe 21.9 1.4E+02 0.0049 22.2 4.8 42 9-50 389-430 (459)
72 4a15_A XPD helicase, ATP-depen 21.9 63 0.0022 25.2 3.0 22 8-30 509-530 (620)
73 4hu2_A Probable conserved lipo 21.8 25 0.00086 24.7 0.6 22 21-42 116-137 (198)
74 1wxv_A BAG-family molecular ch 21.4 1.2E+02 0.0042 17.2 4.8 36 9-45 8-45 (92)
75 1wia_A Hypothetical ubiquitin- 21.0 1.3E+02 0.0044 17.2 3.7 35 8-45 7-41 (95)
76 2faz_A Ubiquitin-like containi 20.6 1.1E+02 0.0039 16.4 4.7 34 8-44 2-37 (78)
77 3m63_B Ubiquitin domain-contai 20.5 1.3E+02 0.0043 17.9 3.6 33 9-45 29-61 (101)
78 3piu_A 1-aminocyclopropane-1-c 20.5 89 0.003 21.8 3.2 41 5-47 386-428 (435)
79 2cqy_A Propionyl-COA carboxyla 20.4 92 0.0032 17.3 2.8 39 5-48 42-81 (108)
80 3oq3_A IFN-alpha-5, interferon 20.2 1.1E+02 0.0039 20.5 3.6 27 25-51 36-67 (166)
81 2kig_A Inositol polyphosphate 20.1 78 0.0027 22.0 2.8 20 9-29 102-121 (161)
No 1
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1
Probab=99.27 E-value=1.2e-12 Score=91.19 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=42.8
Q ss_pred CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHh
Q 035061 1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVE 52 (74)
Q Consensus 1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~e 52 (74)
|++|||+||+||++ +.++||||++|++|.++++++|++|++.||+..
T Consensus 195 ~~~iD~~G~~l~~~-----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~a~~~~ 241 (247)
T 2arz_A 195 LAGIDTEGFHLRIG-----QGLHWLPFPAACGNPGAVRQALVQLARAERWPT 241 (247)
T ss_dssp EEEECSSEEEEEET-----TEEEEEECSSCCCSHHHHHHHHHHHHHCSSCCC
T ss_pred EEEEccCCCEEEEC-----CEEEEEeCCCcCCCHHHHHHHHHHHHHHhHhhc
Confidence 78999999999993 368999999999999999999999999998544
No 2
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=98.99 E-value=3.8e-10 Score=82.20 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=42.9
Q ss_pred CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHH
Q 035061 1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 51 (74)
Q Consensus 1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~ 51 (74)
|++||+.||++++ + ++..+||||++|++|.++++.+|++|++.|=+.
T Consensus 35 m~~iD~~G~~l~~---~-~~~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~ 81 (259)
T 3gas_A 35 FKSVDSQGIVIGY---N-NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKT 81 (259)
T ss_dssp EEEEETTEEEEEE---T-TTEEEEEECSSCCCCGGGHHHHHHHHHHHHHHT
T ss_pred EEEEecCccEEEE---C-CceEEEEeCCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999999 3 578999999999999999999999999998643
No 3
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}
Probab=98.82 E-value=1.2e-09 Score=78.30 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=37.1
Q ss_pred CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
|++|||+||++|+ |++++||||+ +|.++++++|++|++.|
T Consensus 216 ~~~vD~~G~dl~~-----~~~~~Ri~F~---~d~~~~r~~lv~m~~~a 255 (258)
T 3dnh_A 216 ITSIDPDGIDLAS-----ASDLARLWFA---ERVETLKQFEKALAQLL 255 (258)
T ss_dssp EEEEETTEEEEEC-----SSCEEEEECS---SCCCSHHHHHHHHHHHT
T ss_pred EEEEccCcCEEEE-----CCEEEEeeCC---CCHHHHHHHHHHHHHHh
Confidence 6899999999997 3589999999 99999999999999986
No 4
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=98.76 E-value=3.6e-09 Score=76.06 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=38.3
Q ss_pred CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
|+.||+.||++++ + ++..+||||++|+ |.++++.+|++|++.|
T Consensus 36 ~~~iD~~g~~l~~---~-~~~~~ri~F~~~~-~~~~~r~~lv~m~~~a 78 (251)
T 3swj_A 36 LKSVDFNGLDLVY---N-DKENLRVEFPKKA-DENTIKDTIISLCMSA 78 (251)
T ss_dssp EEEEETTEEEEEC-------CEEEEECSSCC-CTTTHHHHHHHHHHHH
T ss_pred EEEEecccCEEEe---C-CceEEEEeCCCCC-CHHHHHHHHHHHHHhc
Confidence 6899999999998 2 5779999999999 9999999999999987
No 5
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=77.48 E-value=1.2 Score=27.38 Aligned_cols=32 Identities=0% Similarity=-0.055 Sum_probs=28.3
Q ss_pred ecCCCccCCHHHHHHHHHHHHHHHHHHhhcCC
Q 035061 25 IPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQ 56 (74)
Q Consensus 25 LPFprPV~D~~~lk~~i~~M~q~Awe~er~~~ 56 (74)
--|+++++|..++...|..|+..++++-|.-.
T Consensus 11 ~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~ 42 (115)
T 1unn_C 11 RTMAEDIHHWSECEAIIERLYPELERRLAKVK 42 (115)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35889999999999999999999999887643
No 6
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=76.98 E-value=5.1 Score=23.24 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=27.0
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
||.+.|...++..+.+.++ |-+++.+||..|....
T Consensus 1 gm~i~vk~~~g~~~~~~v~---~~~TV~~LK~~i~~~~ 35 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 35 (96)
T ss_dssp -CEEEEEETTCCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCEEEEEEC---CCCCHHHHHHHHHhhh
Confidence 7889999876577888776 6778999999987654
No 7
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=62.50 E-value=2.4 Score=28.71 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=16.4
Q ss_pred ccceEEEEcCC-CCceeeeecCCCcc--------CCH------HHHHHHHHHH-------------HHHHHHHhhcCCCC
Q 035061 7 LGFDVRISCPQ-KGLFDVRIPFPTEV--------TDE------KGAKSSFNCM-------------SQQAWEVEKNYQSP 58 (74)
Q Consensus 7 lG~~lRve~~~-~g~~dvRLPFprPV--------~D~------~~lk~~i~~M-------------~q~Awe~er~~~~~ 58 (74)
..|++-|+.+. .+.-|+|=.|.|+- .|. .+.+..|..= -..-||..++-.|.
T Consensus 15 ~~F~l~v~~~~~~~~~d~~~aF~Rt~l~~~~~~~~d~~edagelDF~~lLKKr~~~~~e~kk~~~~~edvWElL~~A~pk 94 (124)
T 2lhu_A 15 VPRGSHMHEAIGSGDLDLRSAFRRTSLAGAGRRTSDSHEDAGTLDFSSLLKKRDSFRRDSKLEAPAEEDVWEILRQAPPS 94 (124)
T ss_dssp -------------------------------------------------------------------CCHHHHHTTSCGG
T ss_pred cccceeeeccccCCcchHHHHhccccccccccccCCcccccchhhHHHHhcccccccccccccccchHHHHHHHccCCcc
Confidence 35677776533 46778999999981 111 1111111110 11369999999999
Q ss_pred cchhhc
Q 035061 59 NFKKVK 64 (74)
Q Consensus 59 ~~~k~~ 64 (74)
||||+-
T Consensus 95 dYEkIA 100 (124)
T 2lhu_A 95 EYERIA 100 (124)
T ss_dssp GHHHHH
T ss_pred hHHHHH
Confidence 999986
No 8
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=62.29 E-value=18 Score=20.01 Aligned_cols=34 Identities=3% Similarity=0.045 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|....+..+.+.++ |-+++.+||..|....
T Consensus 4 m~i~vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEEEEECTTSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCHHHHHHHHHHHH
Confidence 567788766577778776 6788999999987654
No 9
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=62.24 E-value=6.1 Score=19.26 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=21.9
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 47 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~ 47 (74)
|+++.++|....-+...++..+++.|...
T Consensus 22 g~~~~~~~~~~~~dEi~~l~~~~n~m~~~ 50 (56)
T 2asw_A 22 GNLEAEVPHQNRADEIGILAKSIERLRRS 50 (56)
T ss_dssp TCTTCCCTTTTCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCchHHHHHHHHHHHHHH
Confidence 67888888763445668899999998764
No 10
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=61.90 E-value=17 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.0
Q ss_pred ccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 7 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 7 lG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
-||.+.|.+-.|..+.+.++ |-+++.+||..|....
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~---~~~TV~~LK~~I~~~~ 43 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEME---PSDTIENLKAKIQDKE 43 (88)
T ss_dssp --CEEEEEETTSCEEEEECC---TTSBHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCEEEEEEC---CCChHHHHHHHHHHHH
Confidence 38899998876566766665 6688999999887643
No 11
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=59.91 E-value=18 Score=19.38 Aligned_cols=34 Identities=3% Similarity=0.045 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|...++..+.+.++ |-++..++|..|....
T Consensus 1 M~i~vk~~~g~~~~i~v~---~~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 34 (76)
T ss_dssp CEEEEEETTSCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEC---CCCcHHHHHHHHHHHH
Confidence 467787765456667665 5678999999987654
No 12
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=59.89 E-value=16 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNC 43 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~ 43 (74)
+-||+..+...-.|+|.+|..=.+++.+++++|+.
T Consensus 5 LvLRlRn~~rELnDIrFeF~~g~DTaegiA~ELv~ 39 (96)
T 2v3s_A 5 LVLRLRNSKKELNDIRFEFTPGRDTAEGVSQELIS 39 (96)
T ss_dssp EEEEEECTTSCEEEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEeccccchhcceEEEeecCCCcHHHHHHHHHH
Confidence 45777776667899999999999999999999864
No 13
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=56.80 E-value=22 Score=24.41 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=32.7
Q ss_pred eeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 3 WVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 3 ~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
..|-|-|.+.|....|..+.+.++ |-+++.+||..|....
T Consensus 100 T~d~~eMqI~VKtl~Gkt~~l~V~---~s~TV~~LK~kI~~~~ 139 (189)
T 3q3f_A 100 TTDHYGGQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 139 (189)
T ss_dssp ESCCCCEEEEEECTTSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred cccccceeeeeecCCCCEEEEEeC---CCCcHHHHHHHHHhcc
Confidence 568899999999876678888876 6788999999887653
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=55.45 E-value=22 Score=19.01 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|...+|..+.+.++ |-++..++|..|....
T Consensus 1 M~i~vk~~~g~~~~~~v~---~~~tv~~lK~~i~~~~ 34 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIE---PTDKVERIKERVEEKE 34 (76)
T ss_dssp CEEEEECTTSCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred CEEEEECCCCCEEEEEEC---CCChHHHHHHHHHHHH
Confidence 567888766456666654 5678899999887653
No 15
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=54.88 E-value=19 Score=19.97 Aligned_cols=34 Identities=3% Similarity=-0.001 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|....+..+.+.++ |-+++.+||..|....
T Consensus 4 m~i~vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVE---PSDTIENVKAKIQDKE 37 (85)
T ss_dssp CEEEEECGGGCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEEC---CCCcHHHHHHHHHHHH
Confidence 567777655466777776 6788999999987653
No 16
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=53.92 E-value=4.5 Score=24.96 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=9.5
Q ss_pred CceeeeecCCCc
Q 035061 19 GLFDVRIPFPTE 30 (74)
Q Consensus 19 g~~dvRLPFprP 30 (74)
..-=|||||+||
T Consensus 6 ttVyVRlPg~Rp 17 (69)
T 4hpq_A 6 TIVYVRVAGRAR 17 (69)
T ss_dssp CEEEEECSSCCC
T ss_pred eEEEEEecCCCC
Confidence 344599999998
No 17
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=52.22 E-value=14 Score=21.76 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHH---HHHHhhcCCC
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ---AWEVEKNYQS 57 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~---Awe~er~~~~ 57 (74)
|.+|+.+++ |.+.|-+ .|-++..+|+..|.+-+.. .|..--+|.|
T Consensus 5 m~lRvrs~~-G~~Ri~v---~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 5 IIIRVQSPD-GVKRITA---TKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp CCCEEECSS-EEEECCC---CSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred EEEEEECCC-CCEEEEc---CCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 679999998 8886654 3667999999998877653 3444445544
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.83 E-value=28 Score=19.04 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
.|.++|....|..+.+.++ |-+++.+||..|...
T Consensus 7 ~m~i~vk~~~g~~~~~~v~---~~~tV~~LK~~i~~~ 40 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVP---EDELVSTLKQLVSEK 40 (81)
T ss_dssp SEEEEEEETTSCEEEEEEC---SSCBHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEEC---CCCcHHHHHHHHHHH
Confidence 4778888765466777766 567889999988764
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=51.05 E-value=30 Score=19.25 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=27.0
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
.|.+.|....+..+.+.++ |-+++.+||..|....
T Consensus 12 ~m~i~vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~~ 46 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIE---PTDKVERIKERVEEKE 46 (88)
T ss_dssp CEEEEEECTTSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCEEEEEEC---CCCCHHHHHHHHHHHH
Confidence 5788888766677888776 6778999999986553
No 20
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=50.11 E-value=34 Score=19.60 Aligned_cols=36 Identities=3% Similarity=0.007 Sum_probs=27.7
Q ss_pred ccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 7 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 7 lG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
-.|.+.|...+|..+.+.++ |-+++.+||..|....
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~---~~~TV~~LK~~I~~~~ 51 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVE---PSDTIENVKAKIQDKE 51 (91)
T ss_dssp CSEEEEEECTTSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCEEEEEEC---CCCCHHHHHHHHHhhh
Confidence 35788888766678888876 6788999999987654
No 21
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=45.29 E-value=7.4 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.0
Q ss_pred cCCCccCCHHHHHHHHHHHH
Q 035061 26 PFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 26 PFprPV~D~~~lk~~i~~M~ 45 (74)
.|.|++ |+.+|+..|..|.
T Consensus 17 SY~rd~-t~~eLk~il~~m~ 35 (37)
T 1ik9_C 17 SYFIDT-DLNQLKEVFSGIK 35 (37)
T ss_dssp BSSSCC-CHHHHHHHHHTCC
T ss_pred cccCcC-CHHHHHHHHHHcc
Confidence 488999 6999999998874
No 22
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.92 E-value=29 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+||.+.+ |.+ ||....|-.+..+|+..|...+
T Consensus 8 M~irvrs~~-G~~--~v~v~~~~~Tv~~LK~kI~~~~ 41 (107)
T 1wf9_A 8 TMLRVRSRD-GLE--RVSVDGPHITVSQLKTLIQDQL 41 (107)
T ss_dssp EEEEEECSS-CEE--EEEECCTTSBHHHHHHHHHHHS
T ss_pred EEEEEECCC-CCE--EEEECCCCCcHHHHHHHHHHHh
Confidence 789999987 766 5655557889999999887654
No 23
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=42.48 E-value=44 Score=19.39 Aligned_cols=34 Identities=3% Similarity=0.045 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.++|...+|..+.+.++ |-+++.+||..|....
T Consensus 1 M~I~Vk~~~g~~~~~~v~---~~~TV~~LK~~I~~~~ 34 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 34 (98)
T ss_dssp CEEEEEETTSCEEEEECC---TTCBHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCEEEEEEC---CCCcHHHHHHHHHHHH
Confidence 567888766456666654 5678899999887653
No 24
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=42.45 E-value=40 Score=18.17 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.++|.. ++..+.+.++ |-+++.+||..|....
T Consensus 5 m~i~vk~-~g~~~~~~v~---~~~tV~~LK~~i~~~~ 37 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVA---PESTVLQFKEAINKAN 37 (77)
T ss_dssp EEEEEEE-TTEEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEEC---CCCcHHHHHHHHHHHh
Confidence 6777877 4467777776 5678899998887653
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.24 E-value=48 Score=18.46 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
.|.+.|....+..+.+.++ |-+++.+||..|...
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~ 40 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAIN---PNSFILGLKQQIEDQ 40 (87)
T ss_dssp SEEEEEEETTTEEEEEEEC---SSSBHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCEEEEEeC---CCChHHHHHHHHHHH
Confidence 4778888765466777776 567889999988754
No 26
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=38.59 E-value=30 Score=23.49 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=30.6
Q ss_pred eeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 5 DRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 5 DRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
+++|+.++......+..-+||.|....++.+++...+..|.+..
T Consensus 344 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 344 EDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVL 387 (411)
T ss_dssp HHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHH
Confidence 45688777543221334699999777888888888888876654
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=37.68 E-value=61 Score=18.92 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=26.0
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
-|.+.|...+|..+.+.++ |-+++.+||..|....
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~---~~~TV~~LK~~I~~~~ 56 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVE---SSDTIDNVKSKIQDKE 56 (98)
T ss_dssp CCEEEEEETTCCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcHHHHHHHHHHHh
Confidence 3678888766577777765 5678999999987654
No 28
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=37.68 E-value=53 Score=18.15 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
.|.+.|....+..+.+.++ |-+++.+||..|...
T Consensus 5 ~m~i~vk~~~g~~~~~~v~---~~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRME---PDETVKVLKEKIEAE 38 (85)
T ss_dssp CEEEEEEETTSCEEEEEEC---TTSBHHHHHHHHHHH
T ss_pred eEEEEEEECCCCEEEEEEC---CCCCHHHHHHHHHhh
Confidence 5778888765567777775 567788888887653
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=37.61 E-value=43 Score=22.66 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=30.8
Q ss_pred eeccceEEEEcCCCCceeeeecC--CCccCCHHHHHHHHHHHHHHHHH
Q 035061 5 DRLGFDVRISCPQKGLFDVRIPF--PTEVTDEKGAKSSFNCMSQQAWE 50 (74)
Q Consensus 5 DRlG~~lRve~~~~g~~dvRLPF--prPV~D~~~lk~~i~~M~q~Awe 50 (74)
-++||... .. +.|...+++++ +.|..-..++...++.|+.++.+
T Consensus 285 ~k~GF~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (333)
T 4ava_A 285 DRYGAVWQ-RE-DVGVITTMIDVPGPGELSLGREMVDQINRVARQVIE 330 (333)
T ss_dssp HTTTCCCE-EC-STTEEEEEEECCCTTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCcee-cc-CCCEEEEEEecCCccchhHHHHHHHHHHHHHHHHHh
Confidence 47899875 22 23555555544 55677778999999999988765
No 30
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=37.34 E-value=52 Score=18.03 Aligned_cols=33 Identities=3% Similarity=-0.025 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|.+.+|..+.+.++ |-+++.++|..|...
T Consensus 5 m~i~Vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~ 37 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVR---LTQTVAHLKQQVSGL 37 (79)
T ss_dssp EEEEEECTTSCEEEEEEC---TTSBHHHHHHHHHHH
T ss_pred EEEEEEeCCCCEEEEEEC---CcChHHHHHHHHHhh
Confidence 678888876577777776 668899999988654
No 31
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=37.30 E-value=59 Score=18.61 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|.+.+|..+.+.++ |-+++.+||..|...
T Consensus 1 M~I~Vk~~~g~~~~l~v~---~~~TV~~LK~~I~~~ 33 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIE---PTDKVERIKERVEEK 33 (88)
T ss_dssp CEEEEEETTCCEEEEECC---TTCBHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEC---CCCCHHHHHHHHHHH
Confidence 456777655577777764 567899999988654
No 32
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=36.83 E-value=24 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
........|+++++|..++...|..|++.+.+..+.
T Consensus 244 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 279 (362)
T 4f4y_A 244 KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (362)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS
T ss_pred cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 556688999999999999999999999999998887
No 33
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=36.47 E-value=99 Score=21.08 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=25.4
Q ss_pred eeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhcCCCCcch
Q 035061 21 FDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFK 61 (74)
Q Consensus 21 ~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~~~~~~~~ 61 (74)
.-+||.|+.+..+.+++...+..|.+.. .+..|..|.|+
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~~~--~~~~~~~~~~~ 410 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGEIL--DRKTWAQAQFQ 410 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHH--HHTTTC-----
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHHHH--hcccccccccc
Confidence 3699999976788999988888886653 34555555553
No 34
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=35.01 E-value=74 Score=19.19 Aligned_cols=34 Identities=3% Similarity=0.045 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|.+..+..+.++++ |-++..+||..|....
T Consensus 1 M~i~vk~~~g~~~~~~v~---~~~tv~~lK~~i~~~~ 34 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 34 (152)
T ss_dssp CEEEEEETTSCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEEC---CCCCHHHHHHHHHHHH
Confidence 467787765467777765 5678899998887654
No 35
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.84 E-value=66 Score=18.87 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.++|...+ ..+.+.++- -+++.+||..|...+
T Consensus 18 ~~i~Vk~~g-~~~~i~v~~---~~TV~~LK~~I~~~t 50 (95)
T 1v86_A 18 VDLKIIWNK-TKHDVKVPL---DSTGSELKQKIHSIT 50 (95)
T ss_dssp EEEEEEETT-EEEEEEECT---TSBHHHHHHHHHHHH
T ss_pred EEEEEEECC-EEEEEEECC---CCcHHHHHHHHHHHH
Confidence 567777654 788888874 467788888887764
No 36
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=34.69 E-value=33 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHH-hhcCCCCcchhhcc
Q 035061 39 SSFNCMSQQAWEV-EKNYQSPNFKKVKH 65 (74)
Q Consensus 39 ~~i~~M~q~Awe~-er~~~~~~~~k~~~ 65 (74)
..+..|++.||+. +..=-|+.|++|.-
T Consensus 49 ~~VsrlL~~Ar~~~~~~~~P~g~~rv~v 76 (101)
T 2w7n_A 49 GAVSQAVHRVWAAFEDKNLPEGYARVTA 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCCeeEEee
Confidence 4677899999988 33345999998864
No 37
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=34.16 E-value=65 Score=18.15 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|...+|..+.+.+. |-+++.+||..|...
T Consensus 6 m~i~Vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~ 38 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVG---AQMNVKEFKEHIAAS 38 (90)
T ss_dssp EEEEEEETTCCEEEEEEE---TTCBHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCHHHHHHHHHHH
Confidence 677888766577777775 677899999988654
No 38
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=33.57 E-value=34 Score=24.54 Aligned_cols=37 Identities=3% Similarity=-0.060 Sum_probs=33.3
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhcC
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 55 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~~ 55 (74)
........|+++++|..++...|..|++.+.+..+.-
T Consensus 243 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~ 279 (352)
T 1jx4_A 243 KSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKR 279 (352)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999999988764
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=32.39 E-value=69 Score=17.94 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|...+|..+.+.++ |-+++.++|..|...
T Consensus 18 m~i~Vk~~~g~~~~~~v~---~~~tV~~lK~~i~~~ 50 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVG---AQMNVKEFKEHIAAS 50 (88)
T ss_dssp EEEEEEETTSCEEEEEEE---TTCBHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEC---CCCCHHHHHHHHHHH
Confidence 567787765577777775 778899999988644
No 40
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.34 E-value=49 Score=18.94 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCceeeeec-CCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIP-FPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLP-FprPV~D~~~lk~~i~~M 44 (74)
|++||...+ |.+. +. |+ |=++..+|+..|.+-
T Consensus 1 m~i~vr~~~-G~~~--v~~l~-~~~Tv~~Lk~~I~~~ 33 (86)
T 2kzr_A 1 WRVRCKAKG-GTHL--LQGLS-SRTRLRELQGQIAAI 33 (86)
T ss_dssp CCEEEEETT-EEEE--ECSCC-TTCBHHHHHHHHHHH
T ss_pred CEEEEEcCC-CCEE--eeecC-CCCCHHHHHHHHHHH
Confidence 578898887 6553 55 55 567889999888764
No 41
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=32.12 E-value=73 Score=23.71 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=32.2
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
........|+.+++|..++...|..|+..+.+..+.
T Consensus 317 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 352 (434)
T 2aq4_A 317 KSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNE 352 (434)
T ss_dssp CCEEEEECSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999887664
No 42
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=31.71 E-value=39 Score=22.99 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=28.1
Q ss_pred eccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 6 RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 6 RlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
++|+.++......+..-+||.|+...+..+++...+..|.+..
T Consensus 345 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 345 QFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp HHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 4577666433222345699999888777776777777776543
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=31.39 E-value=88 Score=18.85 Aligned_cols=35 Identities=3% Similarity=0.048 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
.|.+.|....+..+.++++ |-+++.+||..|....
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~---~~~TV~~LK~~I~~~~ 69 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 69 (111)
T ss_dssp CEEEEEECSSSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEeC---CCCCHHHHHHHHHHHh
Confidence 5788888766577888875 6788999999887653
No 44
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=31.32 E-value=87 Score=18.76 Aligned_cols=35 Identities=3% Similarity=0.048 Sum_probs=26.3
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
.|.+.|....+..+.+.++ |-+++.+||..|....
T Consensus 35 ~m~I~Vk~~~g~~~~l~v~---~~~TV~~LK~~I~~~~ 69 (111)
T 2ojr_A 35 AMQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 69 (111)
T ss_dssp CEEEEEECSSSCEEEEEEC---TTCBHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeC---CCCCHHHHHHHHHHHH
Confidence 5788888866466777765 5688999999887653
No 45
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=30.50 E-value=27 Score=23.46 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=28.8
Q ss_pred eccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 6 RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 6 RlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
++|+.++......+..-+||.|.....+.+++...+..|.+..
T Consensus 343 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 385 (393)
T 3kgw_A 343 HFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREAL 385 (393)
T ss_dssp HHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHH
T ss_pred hCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 3466665432111334599999777778899998888887654
No 46
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics structure initiative; 1.70A {Streptococcus pneumoniae} SCOP: d.64.2.1
Probab=30.47 E-value=68 Score=20.13 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=36.7
Q ss_pred cceEEEEc-C-CCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhcCCCCcchhhc
Q 035061 8 GFDVRISC-P-QKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVK 64 (74)
Q Consensus 8 G~~lRve~-~-~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~~~~~~~~k~~ 64 (74)
|....++. . ++|...+++|.+-+-+..+.+.-.+..|.----..+++| |+|=|+.
T Consensus 56 ~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~q~ll~~~~~gL~~i~~~Y--p~yI~i~ 112 (117)
T 2idl_A 56 GYEPILELNEDEGGYLMVEIPKDLPSHQREMTQLFFESFFLGMANLSENY--SEFVQTR 112 (117)
T ss_dssp CSCCEEEEECSTTCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TTTEEEE
T ss_pred CCCceEEeecCCCCEEEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHhC--cccEEEE
Confidence 44444443 2 248888888876544455677777888877777788999 5666654
No 47
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=30.18 E-value=69 Score=24.97 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
........|+.+++|..++...|..|++...+..+.
T Consensus 381 KSi~~e~tf~~d~~~~~~l~~~L~~La~~l~~rLr~ 416 (504)
T 3gqc_A 381 KSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 416 (504)
T ss_dssp CCEEEEECSSCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999999999988764
No 48
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.37 E-value=84 Score=17.99 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
.|.+.|....+..+++.|..+ |-+++.+||..|...
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~-~~~TV~~lK~~I~~~ 42 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGD-RGWSVGHLKAHLSRV 42 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECC-TTSCHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCeEEEEEecC-CCCcHHHHHHHHHHH
Confidence 367888887644456777653 678999999988764
No 49
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.32 E-value=20 Score=27.05 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=12.7
Q ss_pred CceeeeecCCCccCCHHHHH
Q 035061 19 GLFDVRIPFPTEVTDEKGAK 38 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk 38 (74)
..-=++||||.| +..-+++
T Consensus 465 ~viI~~lPfp~~-dp~~~ar 483 (551)
T 3crv_A 465 DVVIVGIPYPPP-DDYLKIL 483 (551)
T ss_dssp EEEEESCCCCCC-SHHHHHH
T ss_pred EEEEEcCCCCCC-CHHHHHH
Confidence 344479999999 5544444
No 50
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=29.32 E-value=37 Score=22.99 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=28.3
Q ss_pred eccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 6 RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 6 RlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
+.|+.++......+..-+||.|.....+.+++...+..|.+..
T Consensus 338 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l 380 (396)
T 2ch1_A 338 NFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESL 380 (396)
T ss_dssp HHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred hCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHH
Confidence 4576665422111234599999777778888888888876654
No 51
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=29.11 E-value=83 Score=17.87 Aligned_cols=34 Identities=3% Similarity=-0.040 Sum_probs=24.8
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
.|.+.|.+..|..+.+.++ |-+++.+||..|...
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~---~~~TV~~LK~~I~~~ 37 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVR---LTQTVAHLKQQVSGL 37 (88)
T ss_dssp EEEEEEEETTSCEEEEEEE---SSSBHHHHHHHHHHH
T ss_pred cEEEEEECCCCCEEEEEEC---CCCcHHHHHHHHHHH
Confidence 4678888765466777765 567889999888653
No 52
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=29.09 E-value=30 Score=24.79 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=33.2
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
........|+.+++|..++...|..|++.+.+..+.
T Consensus 244 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~ 279 (354)
T 3bq0_A 244 IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (354)
T ss_dssp CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS
T ss_pred ceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 577788999999999999999999999999998887
No 53
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=28.50 E-value=1.1e+02 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
||.+.|...+|..+.+.++ |-+++.++|..|....
T Consensus 2 ~m~i~vk~~~g~~~~l~v~---~~~tV~~lK~~I~~~~ 36 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLS---SSMSVSELKAQITQKI 36 (159)
T ss_dssp -CEEEEEETTSCEEEEECC---TTCCHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCEEEEEeC---CCCcHHHHHHHHHHHh
Confidence 5788888766567777765 7788999999887664
No 54
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=28.23 E-value=1.1e+02 Score=22.23 Aligned_cols=41 Identities=7% Similarity=-0.037 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWE 50 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe 50 (74)
+.|.+.+.+...+.....++.| .|...+..+...+++..|.
T Consensus 284 v~l~i~~~~~~~~t~s~~l~~p-~d~~~i~~~a~~ll~~~~~ 324 (362)
T 4f4y_A 284 ITVIAIMEDLDILSKGKKFKHG-ISIDNAYKVAEDLLRELLV 324 (362)
T ss_dssp EEEEEEETTSCEEEEEEECSSC-CCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHHHh
Confidence 3455555553445566778888 9999999999999998885
No 55
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=27.85 E-value=42 Score=18.30 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=22.1
Q ss_pred CceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061 19 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 47 (74)
Q Consensus 19 g~~dvRLPFprPV~D~~~lk~~i~~M~q~ 47 (74)
|++..++|....-+....+..+++.|.+.
T Consensus 24 g~~~~~~~~~~~~dEi~~l~~~~n~m~~~ 52 (114)
T 3zcc_A 24 GNLEAEVPHQNRADEIGILAKSIERLRRS 52 (114)
T ss_dssp TCTTCCCTTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 67778888776566778888888888654
No 56
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=27.80 E-value=47 Score=20.37 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035061 35 KGAKSSFNCMSQQAWEV 51 (74)
Q Consensus 35 ~~lk~~i~~M~q~Awe~ 51 (74)
++=|..|.+++|..||-
T Consensus 57 k~dKe~i~eiLqE~we~ 73 (81)
T 1ghh_A 57 KEDKQRISEILQETWES 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 45699999999999997
No 57
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=27.44 E-value=98 Score=18.12 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=25.4
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
+|.+.|.+.. +.+.+.++ |-+++.+||..|...
T Consensus 15 ~~~I~Vk~~~-~~~~l~v~---~~~TV~~LK~~I~~~ 47 (94)
T 2kan_A 15 KIHVTVKFPS-KQFTVEVD---RTETVSSLKDKIHIV 47 (94)
T ss_dssp CEEEEEECSS-CEEEEEEC---TTCBHHHHHHHHHHH
T ss_pred CEEEEEEcCC-cEEEEEEC---CCCcHHHHHHHHHHH
Confidence 4778888876 67777776 667889999888764
No 58
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=27.22 E-value=65 Score=21.93 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=28.5
Q ss_pred eeccceEEEEcCC---CCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 035061 5 DRLGFDVRISCPQ---KGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQS 57 (74)
Q Consensus 5 DRlG~~lRve~~~---~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~~~~ 57 (74)
+++|+.++-.+.- .+..-+||.|.. +.+++..++..|.+ +.+...+-++
T Consensus 336 ~~~gi~v~~g~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~-~~~~~~~~~~ 387 (391)
T 3h14_A 336 EKAGVAVTPGLDFDPERGAGTLRFSYAR---ATADIEEGLDRLEA-FMQARGEGHH 387 (391)
T ss_dssp HHHCEECEEGGGTCTTTGGGEEEEECCS---CHHHHHHHHHHHHH-HHHHC-----
T ss_pred HHCCEEEcCchhhCCCCCCCeEEEEecC---CHHHHHHHHHHHHH-HHHHhccccc
Confidence 4467777654321 135569999998 45788887777654 5565555443
No 59
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=26.28 E-value=1.1e+02 Score=18.16 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|.... |.+.+.++ |-+++.+||..|...
T Consensus 23 m~I~Vk~~~-g~~~l~v~---~~~TV~~LK~~I~~~ 54 (100)
T 1yqb_A 23 IKVTVKTPK-DKEDFSVT---DTCTIQQLKEEISQR 54 (100)
T ss_dssp EEEEEECSS-CEEEEEEE---TTCBHHHHHHHHHHH
T ss_pred EEEEEEcCC-CcEEEEEC---CCCcHHHHHHHHHHH
Confidence 678888876 56777765 567889999888764
No 60
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=25.85 E-value=38 Score=22.93 Aligned_cols=43 Identities=5% Similarity=-0.027 Sum_probs=27.2
Q ss_pred eeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061 5 DRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 47 (74)
Q Consensus 5 DRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~ 47 (74)
++.|+.++......+..-+||.|....++.+++...+..|.+.
T Consensus 337 ~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~ 379 (393)
T 2huf_A 337 KTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEA 379 (393)
T ss_dssp HHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHH
Confidence 3456666543211133469999977667777888877777554
No 61
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=25.82 E-value=92 Score=17.26 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=27.5
Q ss_pred ccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHH
Q 035061 7 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQ 46 (74)
Q Consensus 7 lG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q 46 (74)
.|+...+...+ +-+.||+. |..|..++...+..|-+
T Consensus 33 ~g~~~~i~~~~-~~yRV~vG---pf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 33 KGFDSIVLLKD-GLYKVQIG---AFSSKDNADTLAARAKN 68 (79)
T ss_dssp HTCCEEEEEET-TEEEEEEE---EESSHHHHHHHHHHHHH
T ss_pred CCCCeEEecCC-cEEEEEEC---CcCCHHHHHHHHHHHHH
Confidence 47888887654 78899994 77888888888777754
No 62
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A
Probab=24.77 E-value=1.5e+02 Score=19.64 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=35.7
Q ss_pred cceEEEEc-C-CCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhcCCCCcchhhcc
Q 035061 8 GFDVRISC-P-QKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKH 65 (74)
Q Consensus 8 G~~lRve~-~-~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~~~~~~~~k~~~ 65 (74)
|+...++. . ++|...+++|-.. -++.+++.-+|..|.----+.+++| |+|=|+..
T Consensus 86 ~~~~~~~~~~~e~G~L~~~l~~~~-~~~~~~~qlLLetm~lgL~~I~e~Y--p~yIki~~ 142 (145)
T 2g0i_A 86 DCTVSLQMDEFDGGYMKIDLSYIT-NKSDEKVQLLFEAFLLGITNLAENS--PEFVTAKI 142 (145)
T ss_dssp CCCCEEEEECSTTCEEEEECTTCT-TTTCHHHHHHHHHHHHHHHHHHHHC--TTTEEEEE
T ss_pred CCCceEEeccCCCCEEEEEEcCCC-ccccHHHHHHHHHHHHHHHHHHHhC--cccEEEEE
Confidence 44444544 2 2388888888632 2334567777887777777788999 57766643
No 63
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=24.60 E-value=1e+02 Score=18.64 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=24.3
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNC 43 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~ 43 (74)
.|.+.|....+..+++.|.. .|-+++.+||..|..
T Consensus 23 ~m~I~VK~~~g~~~~i~l~v-~~~~TV~~LK~~I~~ 57 (99)
T 2kdb_A 23 PVTLIIKAPNQKYSDQTISC-FLNWTVGKLKTHLSN 57 (99)
T ss_dssp CEEEEEECTTSSSCCEEEEE-CTTSBHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEEEc-CCCCHHHHHHHHHHH
Confidence 37788888763434555554 588999999988754
No 64
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.62 E-value=1.4e+02 Score=18.50 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 47 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~ 47 (74)
|.+.|.+-+|..+.|-++ |-.++.+||.+|..-...
T Consensus 8 M~I~Vk~l~g~~~~v~V~---~~~TV~dLK~~I~~~~~i 43 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVV---QNATVLDLKKAIQRYVQL 43 (105)
T ss_dssp EEEEEECSSSCEEEEEEC---TTCBHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCEEEEEEC---CCChHHHHHHHHHHHhCC
Confidence 778888766688888885 678999999999876543
No 65
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=23.40 E-value=46 Score=20.20 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.5
Q ss_pred CCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 18 KGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 18 ~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
++.+|+|||=.-+|. .|.+..||...-
T Consensus 16 ~~~~DLRIP~~~tvK----------~Li~~l~ea~~l 42 (81)
T 2bps_A 16 GSVFDLRLSDYHPVK----------KVIDIAWQAQSV 42 (81)
T ss_dssp CCEEEEEEETTSBTT----------HHHHHHHHHSCC
T ss_pred CceEEEECCCchhHH----------HHHHHHHHHhCC
Confidence 489999999776653 444566765543
No 66
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.29 E-value=1.2e+02 Score=17.54 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M 44 (74)
|.+.|.+..|..+.+.++ |-+++.+||..|...
T Consensus 1 M~I~Vk~~~g~~~~~~v~---~~~TV~~LK~~I~~~ 33 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDID---PEETVKALKEKIESE 33 (95)
T ss_dssp CEEEEEETTCCEEEEECC---TTSBHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEEC---CCCHHHHHHHHHHhh
Confidence 467777765466766664 557788888888654
No 67
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=23.21 E-value=17 Score=26.11 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred ecCCCccCCHHHHHHHHHHHHHHHHHHhhc
Q 035061 25 IPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 54 (74)
Q Consensus 25 LPFprPV~D~~~lk~~i~~M~q~Awe~er~ 54 (74)
.-|++|++|..++...|..|+..+-++.+.
T Consensus 251 ~tf~~~~~~~~~l~~~l~~la~~~~~rLr~ 280 (356)
T 4dez_A 251 VTFPQDLTERREMDSAVRDLALQTLAEIVE 280 (356)
T ss_dssp ------------------------------
T ss_pred ccCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999888877654
No 68
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.68 E-value=1.1e+02 Score=17.18 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=23.6
Q ss_pred ccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 7 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 7 lG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
.|+..+|...+ +-+.||+. |..|..++..+...|-
T Consensus 33 ~G~~a~i~~~~-~~yRV~vG---pf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 33 EGFDSKITTNN-GWNRVVIG---PVKGKENADSTLNRLK 67 (81)
T ss_dssp HTCCEEEEECS-SSEEEEES---SCBTTTHHHHHHHHHH
T ss_pred CCCCeEEEeCC-cEEEEEEC---CcCCHHHHHHHHHHHH
Confidence 58888888654 88999992 4455566665555553
No 69
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=22.41 E-value=1.6e+02 Score=20.91 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWE 50 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe 50 (74)
+.|.+.+.+.......+.++.|..|...+.. ...+.+..|.
T Consensus 284 v~l~l~~~~~~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~ 324 (352)
T 1jx4_A 284 IHVVAVTEDLDIVSRGRTFPHGISKETAYSE-SVKLLQKILE 324 (352)
T ss_dssp EEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHHH
T ss_pred EEEEEEECCCCcceeEEecCCCCCCHHHHHH-HHHHHHHHHh
Confidence 3455665553456677888999999999988 8888888774
No 70
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.36 E-value=1.3e+02 Score=17.71 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
|.+.|.... +.+.+.++ +-+++.+||..|....
T Consensus 18 m~I~Vk~~~-g~~~l~v~---~~~TV~~LK~~I~~~~ 50 (106)
T 1wx7_A 18 IKVTVKTPK-DKEDFSVT---DTCTIQQLKEEISQRF 50 (106)
T ss_dssp EEEEEECSS-CEEEEEEE---TTCCHHHHHHHHHHHH
T ss_pred EEEEEEeCC-CcEEEEEC---CCCcHHHHHHHHHHHH
Confidence 778888876 56777765 4578899999887653
No 71
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=21.95 E-value=1.4e+02 Score=22.23 Aligned_cols=42 Identities=2% Similarity=-0.035 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWE 50 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe 50 (74)
+.|.+.+.+........+++.|..|...+-.+...+++.-|.
T Consensus 389 vtl~l~~~~~~~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~ 430 (459)
T 1t94_A 389 VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 430 (459)
T ss_dssp EEEEEEETTCCEEEECC-CCCCCCC--CHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCceeeEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 345555554344556688899999999999988888888774
No 72
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=21.94 E-value=63 Score=25.20 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=11.5
Q ss_pred cceEEEEcCCCCceeeeecCCCc
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTE 30 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprP 30 (74)
|+|+.=+... +..-++||||.|
T Consensus 509 GiD~~g~~l~-~viI~~lPfp~~ 530 (620)
T 4a15_A 509 GINFPGNELE-MIILAGLPFPRP 530 (620)
T ss_dssp ------CCCC-EEEESSCCCCCC
T ss_pred cccCCCCceE-EEEEEcCCCCCC
Confidence 5555544433 555689999998
No 73
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=21.83 E-value=25 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.2
Q ss_pred eeeeecCCCccCCHHHHHHHHH
Q 035061 21 FDVRIPFPTEVTDEKGAKSSFN 42 (74)
Q Consensus 21 ~dvRLPFprPV~D~~~lk~~i~ 42 (74)
+-|-|-|.+|+.|+..+.++|.
T Consensus 116 ~Pv~v~F~~pV~draave~ai~ 137 (198)
T 4hu2_A 116 EPVAIRFDENIADRGAAEKAIK 137 (198)
T ss_dssp CCEEEEESSCCSCHHHHHHTEE
T ss_pred ceEEEECCCCCCChHHhhcccE
Confidence 4588999999999888877664
No 74
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.45 E-value=1.2e+02 Score=17.15 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCceeeeecCC--CccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFP--TEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFp--rPV~D~~~lk~~i~~M~ 45 (74)
|.+.|...+ ..+.+.++-. .+-.++.+||..|...+
T Consensus 8 ~~v~Vk~~~-~~~~i~v~~~~~~~~~TV~~LK~~i~~~~ 45 (92)
T 1wxv_A 8 LTVTVTHSN-EKHDLHVTSQQGSSEPVVQDLAQVVEEVI 45 (92)
T ss_dssp EEEEEECSS-SEEEEEECCCSSSSSCBHHHHHHHHHHHT
T ss_pred EEEEEEECC-EEEEEEECCCcCcccCcHHHHHHHHHHHH
Confidence 678888764 8888887642 12367889998887654
No 75
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.03 E-value=1.3e+02 Score=17.18 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=24.5
Q ss_pred cceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 8 G~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
.|.+.|....+..+.+.++ |-+++.+||..|....
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~---~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 7 GINVRLKFLNDTEELAVAR---PEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp SEEEEEEETTTEEEEEEEC---SSSBHHHHHHHHSSST
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcHHHHHHHHHhhC
Confidence 3678887655456677765 5678889998886543
No 76
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.59 E-value=1.1e+02 Score=16.45 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCc-eeee-ecCCCccCCHHHHHHHHHHH
Q 035061 8 GFDVRISCPQKGL-FDVR-IPFPTEVTDEKGAKSSFNCM 44 (74)
Q Consensus 8 G~~lRve~~~~g~-~dvR-LPFprPV~D~~~lk~~i~~M 44 (74)
+|.+.|.+..|.. +.+. ++ |-++..++|..|...
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~---~~~tv~~lK~~i~~~ 37 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLS---RLTKVEELRRKIQEL 37 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEEC---TTCBHHHHHHHHHHH
T ss_pred cEEEEEEECCCCEEEEEeccC---CCCCHHHHHHHHHHH
Confidence 4778888765344 3565 54 567889999988664
No 77
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.48 E-value=1.3e+02 Score=17.90 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061 9 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 45 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~ 45 (74)
+.+.|.+. +..+.+.++ |-+++.+||..|....
T Consensus 29 i~I~Vk~~-g~~~~l~v~---~~~TV~~LK~~I~~~~ 61 (101)
T 3m63_B 29 LNIHIKSG-QDKWEVNVA---PESTVLQFKEAINKAN 61 (101)
T ss_dssp CCEEEECS-SCCCCBCCC---TTSBHHHHHHHHHHHH
T ss_pred EEEEEEEC-CEEEEEEeC---CCCCHHHHHHHHHHHH
Confidence 56777763 377777664 6778999999887654
No 78
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=20.45 E-value=89 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=27.1
Q ss_pred eeccceEEEEcC--CCCceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061 5 DRLGFDVRISCP--QKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 47 (74)
Q Consensus 5 DRlG~~lRve~~--~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~ 47 (74)
++.|+.++-.+. ..+..-+||.|+.. +.+++..++..|.+.
T Consensus 386 ~~~gi~v~~g~~~~~~~~~~iRi~~~~~--~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 386 YEVHLNISPGSSCHCTEPGWFRVCFANL--PERTLDLAMQRLKAF 428 (435)
T ss_dssp HTSCEECEEGGGGTCSSTTEEEEECSSS--CHHHHHHHHHHHHHH
T ss_pred HHCCEEEeCCcccCCCCCCEEEEEeeCC--CHHHHHHHHHHHHHH
Confidence 455887775332 01445699999543 788888888877653
No 79
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.38 E-value=92 Score=17.32 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=26.9
Q ss_pred eeccceEEEEcCC-CCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061 5 DRLGFDVRISCPQ-KGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48 (74)
Q Consensus 5 DRlG~~lRve~~~-~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A 48 (74)
+++|+.+-++... ++...|++ ++|..++..++..+.+.+
T Consensus 42 ~~~~~P~vvKp~~~~~~~gv~~-----v~~~~el~~~~~~~~~~~ 81 (108)
T 2cqy_A 42 REIGYPVMIKASAGGGGKGMRI-----AWDDEETRDGFRLSSQEA 81 (108)
T ss_dssp HHHCSSEEEEETTSCCTTTCEE-----ESSHHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCCCccEEE-----eCCHHHHHHHHHHHHHHH
Confidence 4678888777544 23344554 579999999998887643
No 80
>3oq3_A IFN-alpha-5, interferon alpha-5; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Mus musculus} SCOP: a.26.1.3
Probab=20.24 E-value=1.1e+02 Score=20.53 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=18.9
Q ss_pred ecCCCccCC-----HHHHHHHHHHHHHHHHHH
Q 035061 25 IPFPTEVTD-----EKGAKSSFNCMSQQAWEV 51 (74)
Q Consensus 25 LPFprPV~D-----~~~lk~~i~~M~q~Awe~ 51 (74)
.+||.+.-+ ..++...+++|+|..+-.
T Consensus 36 F~fP~e~~~~~q~qk~qa~~~~~emlqqif~L 67 (166)
T 3oq3_A 36 FGFPQEKVGAQQIQEAQAIPVLSELTQQVLNI 67 (166)
T ss_dssp CCCCSTTSCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHcccccccHHHHHHHHHHHHHHHHHH
Confidence 457777663 356778899998876543
No 81
>2kig_A Inositol polyphosphate 5-phosphatase II isoform; OCRL, INPP5B, clathrin, endocytosis, hydrolase; NMR {Mus musculus}
Probab=20.07 E-value=78 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCceeeeecCCC
Q 035061 9 FDVRISCPQKGLFDVRIPFPT 29 (74)
Q Consensus 9 ~~lRve~~~~g~~dvRLPFpr 29 (74)
+.+++++.+ ..+-++|||.+
T Consensus 102 vTVq~~~~e-~sl~fqLPFGS 121 (161)
T 2kig_A 102 VTVQLNTAE-LKLVFQLPFGS 121 (161)
T ss_dssp EEEEEECSS-CEEEEEECSST
T ss_pred eEEEEeeee-EEEEEEcccch
Confidence 456778887 99999999986
Done!