AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>035064
MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM
EIYCWNTGNLLAYL

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G49350 AT1G49350 AT1G49350	protein from Arabidopsis thaliana	6.5e-11
BLAST match view associations BLAST with Gga.26687 Gga.26687 Gga.26687 Uncharacterized protein	protein from Gallus gallus	6.9e-05
BLAST match view associations BLAST with CHY_0076 CHY_0076 CHY_0076 kinase, PfkB family	protein from Carboxydothermus hydrogenoformans Z-2901	0.00010
BLAST match view associations BLAST with zgc:136858 zgc:136858 zgc:136858	gene_product from Danio rerio	0.00025
BLAST match view associations BLAST with psuK psuK psuK	gene from Escherichia coli K-12	0.00095

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035064
        (74 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010187 - symbol:AT1G49350 species:3702 "Arabi...   158  6.5e-11   1
UNIPROTKB|F1P1N5 - symbol:Gga.26687 "Uncharacterized prot...   106  6.9e-05   1
TIGR_CMR|CHY_0076 - symbol:CHY_0076 "kinase, PfkB family"...   101  0.00010   1
ZFIN|ZDB-GENE-060421-6632 - symbol:zgc:136858 "zgc:136858...   101  0.00025   1
UNIPROTKB|P30235 - symbol:psuK species:83333 "Escherichia...    91  0.00095   1


>TAIR|locus:2010187 [details] [associations]
            symbol:AT1G49350 species:3702 "Arabidopsis thaliana"
            [GO:0004747 "ribokinase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0006014 "D-ribose metabolic process"
            evidence=IEA] [GO:0016301 "kinase activity" evidence=ISS]
            [GO:0016773 "phosphotransferase activity, alcohol group as
            acceptor" evidence=IEA] InterPro:IPR002139 InterPro:IPR002173
            PRINTS:PR00990 PROSITE:PS00583 Pfam:PF00294 EMBL:CP002684
            InterPro:IPR011611 UniGene:At.19287 UniGene:At.64068 GO:GO:0004747
            GO:GO:0006014 EMBL:AY045816 EMBL:AY142514 IPI:IPI00537476
            RefSeq:NP_564543.1 ProteinModelPortal:Q94AT3 PRIDE:Q94AT3
            EnsemblPlants:AT1G49350.1 GeneID:841358 KEGG:ath:AT1G49350
            TAIR:At1g49350 HOGENOM:HOG000030356 InParanoid:Q94AT3 OMA:ANIPDDI
            PhylomeDB:Q94AT3 ProtClustDB:CLSN2917200 ArrayExpress:Q94AT3
            Genevestigator:Q94AT3 Uniprot:Q94AT3
        Length = 378

 Score = 158 (60.7 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query:     1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
             +IIG ++LD+HA PS      TT  G+  +  GGVARNVA+C+ KLG  P+MI  LGLD
Sbjct:     4 VIIGALILDVHAKPSTTPISGTTVPGQVLFAPGGVARNVADCIFKLGITPFMIGTLGLD 62


>UNIPROTKB|F1P1N5 [details] [associations]
            symbol:Gga.26687 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0016773 "phosphotransferase activity, alcohol
            group as acceptor" evidence=IEA] [GO:0016798 "hydrolase activity,
            acting on glycosyl bonds" evidence=IEA] InterPro:IPR002173
            InterPro:IPR007342 InterPro:IPR022830 Pfam:PF04227 PROSITE:PS00584
            HAMAP:MF_01876 Pfam:PF00294 GO:GO:0016773 InterPro:IPR011611
            GO:GO:0016798 PANTHER:PTHR10584:SF1 SUPFAM:SSF110581
            GeneTree:ENSGT00390000007427 OMA:GGINVDF EMBL:AADN02006363
            IPI:IPI00591436 Ensembl:ENSGALT00000020963 Uniprot:F1P1N5
        Length = 677

 Score = 106 (42.4 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:     1 MIIGGMVLDI--HATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGL 58
             ++IGG  +D    A  S+      T  G+     GGV RN+A+C+S+LG  P  +SA+G 
Sbjct:   339 VVIGGTNVDFIAKAQNSVILGGGQTNAGRVRRTFGGVGRNLADCLSRLGLTPLFLSAVGK 398

Query:    59 D 59
             D
Sbjct:   399 D 399


>TIGR_CMR|CHY_0076 [details] [associations]
            symbol:CHY_0076 "kinase, PfkB family" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008152 "metabolic
            process" evidence=ISS] [GO:0016301 "kinase activity" evidence=ISS]
            InterPro:IPR002173 PROSITE:PS00583 PROSITE:PS00584 Pfam:PF00294
            EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0016301 eggNOG:COG0524 GO:GO:0016773
            InterPro:IPR011611 HOGENOM:HOG000064422 KO:K16328 OMA:VAGHIMN
            RefSeq:YP_358948.1 ProteinModelPortal:Q3AFY6 STRING:Q3AFY6
            GeneID:3728220 KEGG:chy:CHY_0076 PATRIC:21273349
            ProtClustDB:CLSK941318 BioCyc:CHYD246194:GJCN-76-MONOMER
            Uniprot:Q3AFY6
        Length = 364

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query:     2 IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
             ++GG  +DI+  P      + +  GK    +GGVARN+AE +++LG    +I+A+G D
Sbjct:    63 VVGGANIDIYGFPYEKLRLQDSNPGKVKMNVGGVARNIAENLARLGVATRLITAIGDD 120


>ZFIN|ZDB-GENE-060421-6632 [details] [associations]
            symbol:zgc:136858 "zgc:136858" species:7955 "Danio
            rerio" [GO:0016773 "phosphotransferase activity, alcohol group as
            acceptor" evidence=IEA] [GO:0016798 "hydrolase activity, acting on
            glycosyl bonds" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR002173 InterPro:IPR007342
            InterPro:IPR022830 Pfam:PF04227 PROSITE:PS00583 PROSITE:PS00584
            HAMAP:MF_01876 Pfam:PF00294 ZFIN:ZDB-GENE-060421-6632
            eggNOG:COG0524 GO:GO:0016773 InterPro:IPR011611 GO:GO:0016798
            HOGENOM:HOG000064311 PANTHER:PTHR10584:SF1 SUPFAM:SSF110581
            KO:K16330 EMBL:BC115294 IPI:IPI00758634 RefSeq:NP_001035392.1
            UniGene:Dr.77512 ProteinModelPortal:Q1RLT6 STRING:Q1RLT6
            PRIDE:Q1RLT6 GeneID:678543 KEGG:dre:678543 InParanoid:Q1RLT6
            NextBio:20902390 ArrayExpress:Q1RLT6 Bgee:Q1RLT6 Uniprot:Q1RLT6
        Length = 700

 Score = 101 (40.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query:     1 MIIGGMVLDIHATPSIPANP-RTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
             ++IGG+ +D  A  +        T  G      GGV RN+A+C+S+LG KP  ISA+G D
Sbjct:   353 IVIGGINVDFIAKGTTKKLLFGQTNPGSVCQSFGGVGRNIADCLSRLGHKPLFISAIGKD 412


>UNIPROTKB|P30235 [details] [associations]
            symbol:psuK species:83333 "Escherichia coli K-12"
            [GO:0050225 "pseudouridine kinase activity" evidence=IEA;ISS;IDA]
            [GO:0016310 "phosphorylation" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016301 "kinase activity" evidence=IEA] InterPro:IPR002173
            PROSITE:PS00583 PROSITE:PS00584 Pfam:PF00294 GO:GO:0005524
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR eggNOG:COG0524 InterPro:IPR011611
            EMBL:U00007 EMBL:M23196 PIR:E64985 RefSeq:NP_416671.1
            RefSeq:YP_490405.1 ProteinModelPortal:P30235 SMR:P30235
            IntAct:P30235 EnsemblBacteria:EBESCT00000000919
            EnsemblBacteria:EBESCT00000017628 GeneID:12931467 GeneID:946664
            KEGG:ecj:Y75_p2128 KEGG:eco:b2166 PATRIC:32119681 EchoBASE:EB1599
            EcoGene:EG11646 HOGENOM:HOG000064422 KO:K16328 OMA:VAGHIMN
            ProtClustDB:PRK09850 BioCyc:EcoCyc:EG11646-MONOMER
            BioCyc:ECOL316407:JW2153-MONOMER Genevestigator:P30235
            GO:GO:0050225 Uniprot:P30235
        Length = 313

 Score = 91 (37.1 bits), Expect = 0.00095, P = 0.00095
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query:     1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
             +IIG   +D+        N   +  GK  +  GGV RN+A+ ++ LG K +++SA+G D
Sbjct:     8 VIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSD 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.36    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  534 (57 KB)
  Total size of DFA:  98 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.54u 0.12s 7.66t   Elapsed:  00:00:00
  Total cpu time:  7.54u 0.12s 7.66t   Elapsed:  00:00:00
  Start:  Fri May 10 05:19:31 2013   End:  Fri May 10 05:19:31 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data