BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035064
         (74 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
          Clostridium Perfringens
 pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
          Clostridium Perfringens
          Length = 328

 Score = 36.6 bits (83), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 1  MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
          ++ G  V+D+         P  +T G      GGV RN+AE  +++G      S LG D
Sbjct: 10 LVFGASVVDVFGFSKASYRPYNSTPGHVKISFGGVCRNIAENXARVGVNTNFXSILGND 68


>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
           Domain Of A Variant Surface Glycoprotein From
           Trypanosoma Brucei
 pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
           Domain Of A Variant Surface Glycoprotein From
           Trypanosoma Brucei
          Length = 364

 Score = 28.9 bits (63), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 12/50 (24%)

Query: 3   IGGMVLDIHATPSIPANPRTTTLGKANYVLGGVAR----------NVAEC 42
           IGG+   +  +P  P  P  T LGKA YV  G+ R          N AEC
Sbjct: 140 IGGVPCKLQLSPIQPKRPAATYLGKAGYV--GLTRQADAANNFHDNDAEC 187


>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
 pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
          Length = 327

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 32 LGGVARNVAECMSKLGAKPYMISALGLD 59
           GG   N+A  +S+LG K  +IS LG D
Sbjct: 53 FGGSPANIAVNLSRLGKKVALISRLGAD 80


>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
           From Porphyromonas Gingivalis
 pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
           Inhibitor
          Length = 706

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 4   GGMVLDIHATPSIPANPRTTTLGKANYVL 32
           G  ++DI  +P++P     T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440


>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With
          Amp-Pnp
 pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii In Complex With
          Amp-Pnp
          Length = 313

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 33 GGVARNVAECMSKLGAKPYMISALGLD 59
          GG   NVA  +S+LG K  +IS +G D
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGND 59


>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii
 pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
          Ph1459 From Pyrococcus Horikoshii
          Length = 313

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 33 GGVARNVAECMSKLGAKPYMISALGLD 59
          GG   NVA  +S+LG K  +IS +G D
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGND 59


>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
 pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
           With An Inhibitor
          Length = 706

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 4   GGMVLDIHATPSIPANPRTTTLGKANYVL 32
           G  ++DI  +P++P     T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440


>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
           Aminopeptidase Complexed With Substrate
          Length = 706

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 4   GGMVLDIHATPSIPANPRTTTLGKANYVL 32
           G  ++DI  +P++P     T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440


>pdb|1IUB|A Chain A, Fucose-Specific Lectin From Aleuria Aurantia
          (Hg-Derivative Form)
 pdb|1IUC|A Chain A, Fucose-Specific Lectin From Aleuria Aurantia With Three
          Ligands
          Length = 312

 Score = 26.6 bits (57), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 21 RTTTLGKANYVLGGVARNV---AECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 72
          R    G  N   GG ++NV   A+  S L A  +  SA G+ + +YC N  N+L+
Sbjct: 35 REAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWK-SAQGIQIRVYCVNKDNILS 88


>pdb|1OFZ|A Chain A, Crystal Structure Of Fungal Lectin: Six-Bladed
          Beta-Propeller Fold And Novel Fucose Recognition Mode
          For Aleuria Aurantia Lectin
 pdb|1OFZ|B Chain B, Crystal Structure Of Fungal Lectin: Six-Bladed
          Beta-Propeller Fold And Novel Fucose Recognition Mode
          For Aleuria Aurantia Lectin
          Length = 312

 Score = 26.6 bits (57), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 21 RTTTLGKANYVLGGVARNV---AECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 72
          R    G  N   GG ++NV   A+  S L A  +  SA G+ + +YC N  N+L+
Sbjct: 35 REAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWK-SAQGIQIRVYCVNKDNILS 88


>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
          Nucleoside Kinase - An Archaeal Member Of The
          Ribokinase Family
 pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
          Nucleoside Kinase - An Archaeal Member Of The
          Ribokinase Family
 pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
          Nucleoside Kinase - An Archaeal Member Of The
          Ribokinase Family
          Length = 302

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 3  IGGMVLD-IHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 61
          +G   LD I      P    +  +  A    GG A N A  + KLG    ++S +G D +
Sbjct: 11 VGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFK 70


>pdb|1BRL|B Chain B, Three-Dimensional Structure Of Bacterial Luciferase From
           Vibrio Harveyi At 2.4 Angstroms Resolution
 pdb|1LUC|B Chain B, Bacterial Luciferase
 pdb|1XKJ|A Chain A, Bacterial Luciferase Beta2 Homodimer
 pdb|1XKJ|B Chain B, Bacterial Luciferase Beta2 Homodimer
 pdb|1BSL|A Chain A, Structure Of Alkanal Monooxygenase Beta Chain
 pdb|1BSL|B Chain B, Structure Of Alkanal Monooxygenase Beta Chain
 pdb|1BRL|D Chain D, Three-Dimensional Structure Of Bacterial Luciferase From
           Vibrio Harveyi At 2.4 Angstroms Resolution
          Length = 324

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 9   DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 47
           D ++ P I  NP   T G     +   ++ V E  +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187


>pdb|3FGC|B Chain B, Crystal Structure Of The Bacterial Luciferase:flavin
           Complex Reveals The Basis Of Intersubunit Communication
 pdb|3FGC|D Chain D, Crystal Structure Of The Bacterial Luciferase:flavin
           Complex Reveals The Basis Of Intersubunit Communication
          Length = 332

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 9   DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 47
           D ++ P I  NP   T G     +   ++ V E  +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,251,679
Number of Sequences: 62578
Number of extensions: 69708
Number of successful extensions: 215
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 19
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)