BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035064
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P30235|PSUK_ECOLI Pseudouridine kinase OS=Escherichia coli (strain K12) GN=psuK
          PE=1 SV=2
          Length = 313

 Score = 39.3 bits (90), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 1  MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
          +IIG   +D+        N   +  GK  +  GGV RN+A+ ++ LG K +++SA+G D 
Sbjct: 8  VIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDF 67


>sp|O27587|Y1544_METTH Uncharacterized sugar kinase MTH_1544 OS=Methanothermobacter
          thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
          10044 / NBRC 100330 / Delta H) GN=MTH_1544 PE=3 SV=1
          Length = 309

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 17 PANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 61
          P    +T + +   + GG A NVA   S+LG +  ++SA+G D E
Sbjct: 25 PEPNTSTAIKRMRNLHGGAAANVALVGSRLGLRTSLVSAVGGDFE 69


>sp|P33020|YEII_ECOLI Uncharacterized sugar kinase YeiI OS=Escherichia coli (strain K12)
           GN=yeiI PE=3 SV=2
          Length = 362

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 1   MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
           +++G + +DI     I      +  G  +   GGV RN+A  ++ LG   +++S +G D
Sbjct: 61  VVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDD 119


>sp|B2RJX3|PTP_PORG3 Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain
           ATCC 33277 / DSM 20709 / JCM 12257) GN=ptpA PE=3 SV=1
          Length = 732

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 4   GGMVLDIHATPSIPANPRTTTLGKANYVL 32
           G  ++DI  +P++P     T +GK +Y L
Sbjct: 438 GSAIIDIFQSPTVPRKVTVTNIGKGSYTL 466


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,798,318
Number of Sequences: 539616
Number of extensions: 916911
Number of successful extensions: 2308
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2303
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)