Query 035064
Match_columns 74
No_of_seqs 158 out of 1130
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09954 putative kinase; Prov 99.6 4.8E-16 1E-20 109.1 7.4 70 1-71 61-135 (362)
2 PRK11142 ribokinase; Provision 99.6 9.8E-16 2.1E-20 104.3 6.9 71 1-71 6-81 (306)
3 PRK09850 pseudouridine kinase; 99.6 1.1E-15 2.4E-20 105.2 7.1 71 1-71 8-82 (313)
4 cd01939 Ketohexokinase Ketohex 99.6 2.3E-15 4.9E-20 102.2 7.3 70 1-70 3-77 (290)
5 PTZ00292 ribokinase; Provision 99.6 2.7E-15 5.8E-20 103.4 6.8 70 1-70 19-93 (326)
6 cd01944 YegV_kinase_like YegV- 99.6 3.9E-15 8.4E-20 100.8 7.3 69 1-70 3-76 (289)
7 cd01174 ribokinase Ribokinase 99.6 3.1E-15 6.6E-20 100.9 6.8 70 1-70 3-77 (292)
8 cd01947 Guanosine_kinase_like 99.6 3.7E-15 8E-20 99.8 6.8 63 1-63 3-66 (265)
9 KOG2855 Ribokinase [Carbohydra 99.6 1.6E-15 3.5E-20 107.1 4.5 70 1-70 13-87 (330)
10 cd01168 adenosine_kinase Adeno 99.6 2.8E-15 6E-20 102.7 5.4 70 1-70 5-96 (312)
11 cd01945 ribokinase_group_B Rib 99.6 1.5E-14 3.3E-19 97.4 7.8 70 1-70 3-77 (284)
12 cd01942 ribokinase_group_A Rib 99.6 1.7E-14 3.7E-19 96.7 7.3 70 1-70 3-77 (279)
13 cd01941 YeiC_kinase_like YeiC- 99.5 1.5E-14 3.3E-19 97.4 6.8 71 1-71 3-77 (288)
14 PTZ00247 adenosine kinase; Pro 99.5 4.6E-14 9.9E-19 98.4 6.2 71 1-71 9-108 (345)
15 PLN02813 pfkB-type carbohydrat 99.5 6.5E-14 1.4E-18 101.3 6.0 71 1-71 73-176 (426)
16 PF00294 PfkB: pfkB family car 99.5 7.8E-14 1.7E-18 94.0 6.0 69 1-70 5-77 (301)
17 COG0524 RbsK Sugar kinases, ri 99.5 7.2E-14 1.6E-18 95.5 5.5 70 1-70 3-78 (311)
18 TIGR02152 D_ribokin_bact ribok 99.4 3E-13 6.5E-18 91.6 6.9 67 4-70 1-72 (293)
19 PLN02967 kinase 99.4 1.7E-13 3.7E-18 102.7 5.3 70 1-70 200-284 (581)
20 PLN02341 pfkB-type carbohydrat 99.4 2.4E-13 5.3E-18 99.2 5.7 69 1-70 76-160 (470)
21 TIGR03828 pfkB 1-phosphofructo 99.4 5.8E-13 1.3E-17 90.4 5.7 65 4-70 6-75 (304)
22 PLN02323 probable fructokinase 99.4 4.3E-13 9.3E-18 92.7 5.1 67 1-70 14-84 (330)
23 cd01164 FruK_PfkB_like 1-phosp 99.4 5.9E-13 1.3E-17 90.2 5.5 67 2-70 5-76 (289)
24 cd01166 KdgK 2-keto-3-deoxyglu 99.4 5.4E-13 1.2E-17 89.9 4.8 66 1-70 3-72 (294)
25 TIGR02198 rfaE_dom_I rfaE bifu 99.4 2.1E-12 4.6E-17 88.3 6.9 70 1-71 11-89 (315)
26 cd01172 RfaE_like RfaE encodes 99.4 2.2E-12 4.7E-17 87.6 6.7 69 1-70 3-80 (304)
27 PRK11316 bifunctional heptose 99.4 2E-12 4.2E-17 93.5 6.8 69 1-70 14-91 (473)
28 cd01167 bac_FRK Fructokinases 99.4 1.3E-12 2.8E-17 88.2 5.6 63 1-70 3-69 (295)
29 PLN02543 pfkB-type carbohydrat 99.3 1.4E-12 3.1E-17 96.2 5.0 73 1-73 129-217 (496)
30 cd01937 ribokinase_group_D Rib 99.3 6.9E-12 1.5E-16 83.5 5.9 59 1-70 3-63 (254)
31 PRK09513 fruK 1-phosphofructok 99.3 1.2E-11 2.6E-16 85.0 5.9 66 5-71 11-80 (312)
32 PRK09813 fructoselysine 6-kina 99.3 8.6E-12 1.9E-16 83.7 4.8 58 1-71 4-65 (260)
33 TIGR03168 1-PFK hexose kinase, 99.2 1.7E-11 3.6E-16 83.6 5.0 64 5-70 7-75 (303)
34 cd01940 Fructoselysine_kinase_ 99.2 2.1E-11 4.6E-16 81.5 5.0 57 1-70 3-63 (264)
35 PRK09434 aminoimidazole ribosi 99.2 2.9E-11 6.3E-16 82.5 5.6 61 1-71 6-70 (304)
36 cd00287 ribokinase_pfkB_like r 99.2 5.8E-11 1.3E-15 75.7 6.1 54 1-54 3-57 (196)
37 TIGR01231 lacC tagatose-6-phos 99.2 3.9E-11 8.4E-16 82.4 5.6 64 5-70 7-75 (309)
38 cd01946 ribokinase_group_C Rib 99.1 6.7E-11 1.5E-15 79.9 4.8 58 1-70 3-64 (277)
39 KOG3009 Predicted carbohydrate 99.1 1.2E-10 2.6E-15 85.9 5.0 69 1-69 344-413 (614)
40 PRK13508 tagatose-6-phosphate 99.1 2E-10 4.4E-15 78.8 5.8 64 4-70 7-75 (309)
41 PLN02630 pfkB-type carbohydrat 99.1 4E-10 8.7E-15 79.6 6.3 51 1-61 15-65 (335)
42 PRK10294 6-phosphofructokinase 99.0 3.8E-10 8.2E-15 77.4 5.3 63 6-70 11-78 (309)
43 PRK15074 inosine/guanosine kin 98.9 3.8E-09 8.3E-14 77.1 5.8 71 1-71 37-138 (434)
44 PLN02379 pfkB-type carbohydrat 98.9 3.3E-09 7.2E-14 75.4 4.9 44 28-71 81-129 (367)
45 cd01943 MAK32 MAK32 kinase. M 98.9 1.5E-09 3.2E-14 75.9 2.8 60 1-70 3-71 (328)
46 PLN02548 adenosine kinase 98.8 1.7E-09 3.6E-14 74.9 2.1 44 27-70 46-96 (332)
47 COG2870 RfaE ADP-heptose synth 98.8 7.9E-09 1.7E-13 75.3 5.6 72 1-73 14-94 (467)
48 KOG2947 Carbohydrate kinase [C 98.1 4E-06 8.7E-11 58.3 4.4 70 1-70 8-82 (308)
49 KOG2854 Possible pfkB family c 97.5 0.00015 3.3E-09 51.9 3.9 69 2-70 11-107 (343)
50 COG1105 FruK Fructose-1-phosph 97.5 0.00011 2.4E-09 52.1 3.1 63 7-70 10-76 (310)
51 TIGR01281 DPOR_bchL light-inde 73.4 4 8.6E-05 27.4 2.7 18 36-53 17-34 (268)
52 cd00562 NifX_NifB This CD repr 72.9 6.5 0.00014 22.3 3.3 40 33-73 47-86 (102)
53 PF09140 MipZ: ATPase MipZ; I 71.2 3.7 8E-05 28.8 2.2 26 35-63 17-42 (261)
54 PRK13235 nifH nitrogenase redu 65.5 7.3 0.00016 26.3 2.7 19 35-53 17-35 (274)
55 PRK13232 nifH nitrogenase redu 65.5 7.2 0.00016 26.4 2.7 18 36-53 18-35 (273)
56 COG0219 CspR Predicted rRNA me 64.9 6.9 0.00015 25.5 2.4 36 37-72 17-52 (155)
57 PF00142 Fer4_NifH: 4Fe-4S iro 64.2 9.3 0.0002 27.0 3.1 21 35-55 16-36 (273)
58 COG1433 Uncharacterized conser 63.3 8.7 0.00019 23.9 2.5 42 31-73 49-90 (121)
59 cd02037 MRP-like MRP (Multiple 62.3 9.6 0.00021 23.8 2.7 19 36-54 17-35 (169)
60 TIGR02354 thiF_fam2 thiamine b 61.9 9 0.00019 25.3 2.6 22 28-49 25-46 (200)
61 KOG2844 Dimethylglycine dehydr 61.9 20 0.00043 28.9 4.7 47 27-73 42-88 (856)
62 cd02032 Bchl_like This family 61.8 9.3 0.0002 25.6 2.7 18 36-53 17-34 (267)
63 COG0489 Mrp ATPases involved i 60.9 9.6 0.00021 26.2 2.7 28 27-54 61-93 (265)
64 PRK13236 nitrogenase reductase 60.3 10 0.00022 26.3 2.7 18 36-53 23-40 (296)
65 cd02117 NifH_like This family 60.3 11 0.00023 24.5 2.7 18 36-53 17-34 (212)
66 PHA02518 ParA-like protein; Pr 60.0 10 0.00022 24.1 2.5 24 36-62 18-41 (211)
67 PRK13230 nitrogenase reductase 59.3 10 0.00022 25.7 2.5 18 36-53 18-35 (279)
68 PRK13185 chlL protochlorophyll 58.2 12 0.00025 25.2 2.7 19 36-54 19-37 (270)
69 PRK11670 antiporter inner memb 58.0 11 0.00025 27.1 2.7 34 27-63 111-149 (369)
70 PRK13234 nifH nitrogenase redu 58.0 11 0.00024 26.0 2.6 18 36-53 21-38 (295)
71 CHL00175 minD septum-site dete 57.4 21 0.00045 24.1 3.8 27 27-53 19-50 (281)
72 cd02040 NifH NifH gene encodes 56.6 12 0.00026 24.8 2.5 19 36-54 18-36 (270)
73 TIGR01287 nifH nitrogenase iro 56.4 12 0.00026 25.2 2.5 18 36-53 17-34 (275)
74 PRK10037 cell division protein 55.8 13 0.00029 24.8 2.6 19 36-54 19-37 (250)
75 CHL00072 chlL photochlorophyll 54.6 14 0.0003 25.6 2.6 19 36-54 17-35 (290)
76 COG2893 ManX Phosphotransferas 54.2 19 0.0004 22.9 3.0 26 31-56 68-93 (143)
77 TIGR03029 EpsG chain length de 53.8 15 0.00032 24.8 2.6 20 36-55 121-140 (274)
78 cd02036 MinD Bacterial cell di 53.5 16 0.00034 22.5 2.5 19 36-54 17-35 (179)
79 PF06564 YhjQ: YhjQ protein; 53.2 16 0.00034 25.3 2.7 20 36-55 19-38 (243)
80 PRK15116 sulfur acceptor prote 51.0 19 0.00041 25.1 2.8 21 28-48 34-54 (268)
81 TIGR01969 minD_arch cell divis 50.5 18 0.00039 23.5 2.6 19 36-54 18-36 (251)
82 TIGR03371 cellulose_yhjQ cellu 49.0 21 0.00045 23.3 2.7 20 36-55 19-38 (246)
83 cd01938 ADPGK_ADPPFK ADP-depen 48.5 19 0.00042 27.0 2.7 34 28-61 101-135 (445)
84 cd00851 MTH1175 This uncharact 48.4 25 0.00054 19.8 2.7 39 34-73 50-88 (103)
85 PF01488 Shikimate_DH: Shikima 47.2 28 0.00061 21.2 2.9 28 28-55 16-44 (135)
86 PRK10262 thioredoxin reductase 46.5 44 0.00096 22.8 4.1 29 26-54 7-36 (321)
87 TIGR01007 eps_fam capsular exo 46.4 24 0.00052 22.6 2.7 21 35-55 34-54 (204)
88 COG2894 MinD Septum formation 45.8 22 0.00047 25.0 2.4 19 36-54 20-38 (272)
89 cd01487 E1_ThiF_like E1_ThiF_l 45.0 28 0.00061 22.3 2.8 21 29-49 4-24 (174)
90 COG1348 NifH Nitrogenase subun 45.0 21 0.00046 25.2 2.3 25 36-63 18-42 (278)
91 COG3761 NADH:ubiquinone oxidor 44.9 6.7 0.00014 24.1 -0.1 20 54-73 14-34 (118)
92 cd00757 ThiF_MoeB_HesA_family 44.5 26 0.00057 23.2 2.7 22 28-49 25-46 (228)
93 TIGR02016 BchX chlorophyllide 44.0 26 0.00055 24.4 2.6 20 36-55 17-36 (296)
94 TIGR03329 Phn_aa_oxid putative 43.6 63 0.0014 23.5 4.7 30 26-55 25-57 (460)
95 PRK08328 hypothetical protein; 42.9 29 0.00062 23.3 2.7 23 28-50 31-53 (231)
96 PF02579 Nitro_FeMo-Co: Dinitr 42.6 8.6 0.00019 21.5 0.1 42 31-73 37-78 (94)
97 cd00550 ArsA_ATPase Oxyanion-t 42.6 32 0.0007 23.2 2.9 20 36-55 17-36 (254)
98 COG1053 SdhA Succinate dehydro 42.2 35 0.00076 26.2 3.3 31 28-58 10-40 (562)
99 PF01656 CbiA: CobQ/CobB/MinD/ 42.2 31 0.00067 21.4 2.6 20 36-55 16-35 (195)
100 TIGR01968 minD_bact septum sit 41.8 31 0.00066 22.6 2.6 19 36-54 19-37 (261)
101 PF00899 ThiF: ThiF family; I 41.8 30 0.00064 20.8 2.4 29 29-59 7-35 (135)
102 PRK13233 nifH nitrogenase redu 41.5 29 0.00063 23.3 2.6 19 35-53 18-37 (275)
103 TIGR02356 adenyl_thiF thiazole 41.2 29 0.00063 22.7 2.5 22 28-49 25-46 (202)
104 TIGR03453 partition_RepA plasm 40.7 31 0.00068 24.7 2.7 28 27-54 108-140 (387)
105 PRK12831 putative oxidoreducta 40.5 69 0.0015 23.6 4.5 29 27-55 142-171 (464)
106 TIGR00137 gid_trmFO tRNA:m(5)U 39.8 52 0.0011 24.6 3.8 26 30-55 5-31 (433)
107 PRK14039 ADP-dependent glucoki 39.8 40 0.00087 25.5 3.2 25 28-52 86-110 (453)
108 PRK12409 D-amino acid dehydrog 39.6 56 0.0012 23.1 3.9 27 29-55 5-32 (410)
109 PRK06153 hypothetical protein; 39.3 29 0.00064 25.7 2.4 30 29-60 181-210 (393)
110 TIGR02045 P_fruct_ADP ADP-spec 39.1 29 0.00063 26.1 2.4 29 30-58 86-116 (446)
111 PRK03979 ADP-specific phosphof 39.1 32 0.00069 26.0 2.6 30 29-58 98-129 (463)
112 cd02033 BchX Chlorophyllide re 39.0 41 0.00088 24.1 3.1 25 31-55 38-67 (329)
113 PRK10818 cell division inhibit 39.0 34 0.00074 22.8 2.6 20 36-55 20-39 (270)
114 cd01076 NAD_bind_1_Glu_DH NAD( 37.5 36 0.00078 22.9 2.5 38 29-70 36-73 (227)
115 PF00890 FAD_binding_2: FAD bi 37.4 44 0.00094 23.6 3.0 30 29-58 4-33 (417)
116 PF01494 FAD_binding_3: FAD bi 37.4 63 0.0014 21.6 3.7 29 29-57 5-34 (356)
117 PRK13869 plasmid-partitioning 36.7 88 0.0019 22.8 4.6 27 27-53 125-156 (405)
118 PRK08626 fumarate reductase fl 36.7 45 0.00097 25.9 3.2 32 28-59 9-40 (657)
119 cd00755 YgdL_like Family of ac 36.6 49 0.0011 22.4 3.1 31 28-60 15-45 (231)
120 PRK15394 4-deoxy-4-formamido-L 35.9 49 0.0011 23.4 3.0 33 31-64 16-48 (296)
121 cd01483 E1_enzyme_family Super 35.8 48 0.001 20.0 2.7 20 30-49 5-24 (143)
122 TIGR02355 moeB molybdopterin s 34.9 54 0.0012 22.2 3.1 31 28-60 28-58 (240)
123 PRK07688 thiamine/molybdopteri 34.2 49 0.0011 23.6 2.9 30 28-59 28-57 (339)
124 TIGR03815 CpaE_hom_Actino heli 34.1 45 0.00099 23.1 2.6 26 28-53 98-128 (322)
125 PF00208 ELFV_dehydrog: Glutam 33.6 20 0.00044 24.4 0.8 26 29-54 37-62 (244)
126 PRK09078 sdhA succinate dehydr 33.4 70 0.0015 24.5 3.7 28 29-56 17-44 (598)
127 PRK13849 putative crown gall t 33.1 52 0.0011 22.1 2.7 19 36-54 19-37 (231)
128 PRK04148 hypothetical protein; 33.0 59 0.0013 20.4 2.8 25 28-53 21-45 (134)
129 PF02254 TrkA_N: TrkA-N domain 32.8 66 0.0014 18.4 2.9 46 27-72 65-112 (116)
130 PF14272 Gly_rich_SFCGS: Glyci 32.6 38 0.00083 20.7 1.8 36 34-69 10-46 (115)
131 PRK12475 thiamine/molybdopteri 32.5 54 0.0012 23.4 2.9 31 28-60 28-58 (338)
132 PRK13705 plasmid-partitioning 32.3 51 0.0011 23.9 2.7 28 27-54 110-142 (388)
133 PF13614 AAA_31: AAA domain; P 32.1 59 0.0013 19.5 2.7 21 35-55 17-37 (157)
134 PF12831 FAD_oxidored: FAD dep 31.8 58 0.0013 23.6 3.0 34 35-70 10-43 (428)
135 PF13439 Glyco_transf_4: Glyco 31.5 57 0.0012 19.1 2.5 28 36-63 18-45 (177)
136 PRK11259 solA N-methyltryptoph 30.9 88 0.0019 21.6 3.7 26 30-55 8-34 (376)
137 PRK05976 dihydrolipoamide dehy 30.9 63 0.0014 23.6 3.0 27 29-55 8-35 (472)
138 PRK08644 thiamine biosynthesis 30.6 59 0.0013 21.5 2.7 22 28-49 32-53 (212)
139 TIGR01377 soxA_mon sarcosine o 30.4 93 0.002 21.5 3.7 23 33-55 9-31 (380)
140 PTZ00058 glutathione reductase 30.3 80 0.0017 24.2 3.6 29 27-55 50-79 (561)
141 TIGR00824 EIIA-man PTS system, 30.1 81 0.0018 18.8 3.0 25 31-55 67-91 (116)
142 cd05211 NAD_bind_Glu_Leu_Phe_V 30.1 56 0.0012 21.8 2.5 27 29-55 28-54 (217)
143 TIGR03018 pepcterm_TyrKin exop 29.5 62 0.0013 20.9 2.6 19 36-54 53-72 (207)
144 PRK08641 sdhA succinate dehydr 29.5 81 0.0018 24.1 3.5 29 29-57 8-36 (589)
145 PRK06452 sdhA succinate dehydr 29.4 84 0.0018 23.8 3.5 29 29-57 10-38 (566)
146 TIGR03736 PRTRC_ThiF PRTRC sys 29.1 56 0.0012 22.5 2.4 21 28-48 15-35 (244)
147 PRK05192 tRNA uridine 5-carbox 28.9 71 0.0015 25.1 3.1 25 32-56 12-36 (618)
148 TIGR02114 coaB_strep phosphopa 28.8 57 0.0012 21.8 2.3 26 29-54 21-46 (227)
149 PRK07818 dihydrolipoamide dehy 28.8 98 0.0021 22.5 3.7 28 28-55 7-35 (466)
150 PRK00258 aroE shikimate 5-dehy 28.7 72 0.0016 21.8 2.9 29 28-56 127-156 (278)
151 TIGR00345 arsA arsenite-activa 28.4 68 0.0015 22.1 2.7 21 35-55 1-21 (284)
152 cd01983 Fer4_NifH The Fer4_Nif 28.4 76 0.0017 16.7 2.5 19 36-54 16-34 (99)
153 PF02558 ApbA: Ketopantoate re 28.2 61 0.0013 19.5 2.3 28 30-57 4-31 (151)
154 PRK12549 shikimate 5-dehydroge 28.1 55 0.0012 22.7 2.2 27 28-54 131-158 (284)
155 cd02035 ArsA ArsA ATPase funct 28.1 76 0.0016 20.7 2.8 20 36-55 16-35 (217)
156 PRK08274 tricarballylate dehyd 27.7 75 0.0016 23.0 3.0 28 29-56 9-36 (466)
157 TIGR01438 TGR thioredoxin and 27.6 81 0.0018 23.4 3.2 23 33-55 11-33 (484)
158 PRK05690 molybdopterin biosynt 27.6 71 0.0015 21.6 2.7 31 28-60 36-66 (245)
159 PRK12550 shikimate 5-dehydroge 27.4 90 0.002 21.6 3.2 28 28-55 126-154 (272)
160 PHA02519 plasmid partition pro 27.3 68 0.0015 23.3 2.7 28 27-54 110-142 (387)
161 PTZ00139 Succinate dehydrogena 27.3 94 0.002 24.0 3.5 44 27-70 32-75 (617)
162 TIGR03364 HpnW_proposed FAD de 27.2 1.2E+02 0.0025 21.0 3.7 25 31-55 6-31 (365)
163 PRK06116 glutathione reductase 27.0 81 0.0018 22.8 3.0 28 28-55 7-35 (450)
164 PF13579 Glyco_trans_4_4: Glyc 26.9 91 0.002 17.9 2.8 25 36-60 7-31 (160)
165 COG0503 Apt Adenine/guanine ph 26.9 1.8E+02 0.0039 18.8 4.4 44 16-59 111-155 (179)
166 cd03796 GT1_PIG-A_like This fa 26.7 93 0.002 21.8 3.2 31 32-62 13-46 (398)
167 PRK07878 molybdopterin biosynt 26.5 91 0.002 22.6 3.2 31 28-60 46-76 (392)
168 KOG0725 Reductases with broad 26.2 72 0.0016 21.9 2.5 26 32-57 17-42 (270)
169 PRK11749 dihydropyrimidine deh 26.2 1.5E+02 0.0032 21.6 4.3 29 27-55 142-171 (457)
170 PRK08958 sdhA succinate dehydr 26.2 98 0.0021 23.7 3.4 30 29-58 12-41 (588)
171 TIGR01813 flavo_cyto_c flavocy 26.2 91 0.002 22.3 3.2 27 30-56 5-32 (439)
172 PRK06370 mercuric reductase; V 26.1 1.1E+02 0.0025 22.1 3.7 28 28-55 8-36 (463)
173 cd01527 RHOD_YgaP Member of th 26.0 1.3E+02 0.0028 16.7 4.0 22 28-49 59-80 (99)
174 TIGR01350 lipoamide_DH dihydro 25.7 92 0.002 22.5 3.1 25 31-55 7-32 (461)
175 COG1058 CinA Predicted nucleot 25.7 83 0.0018 22.0 2.8 24 38-61 25-48 (255)
176 PRK06732 phosphopantothenate-- 25.4 68 0.0015 21.5 2.2 26 29-54 22-47 (229)
177 TIGR01424 gluta_reduc_2 glutat 25.3 99 0.0021 22.4 3.2 26 30-55 7-33 (446)
178 PRK05708 2-dehydropantoate 2-r 25.2 1E+02 0.0022 21.4 3.1 27 30-56 8-34 (305)
179 PLN00128 Succinate dehydrogena 25.1 1.2E+02 0.0026 23.5 3.8 29 29-57 55-83 (635)
180 PRK06249 2-dehydropantoate 2-r 24.9 1E+02 0.0022 21.3 3.1 27 29-55 10-36 (313)
181 PRK08223 hypothetical protein; 24.6 1.1E+02 0.0023 21.7 3.2 31 28-60 31-61 (287)
182 TIGR03577 EF_0830 conserved hy 24.3 60 0.0013 19.9 1.6 36 34-69 10-46 (115)
183 PRK05597 molybdopterin biosynt 24.2 90 0.002 22.3 2.8 30 28-59 32-61 (355)
184 KOG2311 NAD/FAD-utilizing prot 23.4 1E+02 0.0022 24.3 3.0 28 28-55 32-59 (679)
185 cd00006 PTS_IIA_man PTS_IIA, P 23.4 1.2E+02 0.0027 17.9 3.0 25 32-56 67-91 (122)
186 KOG3022 Predicted ATPase, nucl 23.3 84 0.0018 22.6 2.4 18 36-53 65-82 (300)
187 PRK06467 dihydrolipoamide dehy 23.2 1.1E+02 0.0024 22.4 3.2 27 29-55 8-35 (471)
188 PRK14851 hypothetical protein; 23.1 89 0.0019 24.7 2.8 22 28-49 47-68 (679)
189 PTZ00052 thioredoxin reductase 22.9 1.1E+02 0.0023 22.9 3.0 27 29-55 9-36 (499)
190 TIGR03140 AhpF alkyl hydropero 22.9 1.5E+02 0.0033 22.0 3.9 28 27-54 214-242 (515)
191 TIGR01812 sdhA_frdA_Gneg succi 22.8 1.3E+02 0.0029 22.5 3.6 27 30-56 5-31 (566)
192 PRK06481 fumarate reductase fl 22.5 1.1E+02 0.0024 22.8 3.1 28 28-55 65-92 (506)
193 TIGR01133 murG undecaprenyldip 22.5 1.7E+02 0.0036 19.7 3.8 18 38-55 19-36 (348)
194 PRK07804 L-aspartate oxidase; 22.5 1.4E+02 0.003 22.5 3.6 31 28-58 20-50 (541)
195 PRK07236 hypothetical protein; 22.4 1.7E+02 0.0037 20.5 3.9 30 27-56 8-38 (386)
196 PRK12548 shikimate 5-dehydroge 22.4 1.3E+02 0.0028 20.7 3.3 28 28-55 130-158 (289)
197 TIGR01316 gltA glutamate synth 22.3 2.2E+02 0.0048 20.8 4.6 29 27-55 135-164 (449)
198 PRK13231 nitrogenase reductase 22.2 40 0.00086 22.5 0.6 17 36-53 19-35 (264)
199 TIGR02053 MerA mercuric reduct 22.2 1.2E+02 0.0025 22.0 3.1 21 35-55 11-31 (463)
200 TIGR01421 gluta_reduc_1 glutat 21.9 1.2E+02 0.0026 22.1 3.1 26 30-55 7-33 (450)
201 cd00853 NifX NifX belongs to a 21.6 1.4E+02 0.003 17.0 2.9 27 46-73 60-86 (102)
202 PRK07139 amidase; Provisional 21.6 77 0.0017 23.3 2.1 58 1-63 83-143 (439)
203 PRK14027 quinate/shikimate deh 21.6 1.4E+02 0.003 20.7 3.3 26 28-53 131-156 (283)
204 TIGR01005 eps_transp_fam exopo 21.3 92 0.002 24.3 2.5 20 36-55 564-583 (754)
205 PRK12778 putative bifunctional 21.1 2.2E+02 0.0047 22.4 4.5 29 27-55 433-462 (752)
206 cd02042 ParA ParA and ParB of 21.1 1.3E+02 0.0029 16.7 2.7 19 36-54 17-35 (104)
207 COG1249 Lpd Pyruvate/2-oxoglut 21.0 2.8E+02 0.006 20.8 4.9 34 24-57 172-206 (454)
208 PRK07411 hypothetical protein; 20.9 1.2E+02 0.0025 22.1 2.9 30 28-59 42-71 (390)
209 PRK07843 3-ketosteroid-delta-1 20.8 1.2E+02 0.0027 22.9 3.1 28 28-55 11-38 (557)
210 cd00885 cinA Competence-damage 20.8 1.4E+02 0.0029 19.2 2.9 26 36-61 21-46 (170)
211 PRK12810 gltD glutamate syntha 20.8 2.7E+02 0.0059 20.4 4.8 29 27-55 145-174 (471)
212 cd01485 E1-1_like Ubiquitin ac 20.7 1.6E+02 0.0034 19.2 3.2 23 28-50 23-45 (198)
213 PRK06292 dihydrolipoamide dehy 20.6 1.2E+02 0.0027 21.8 3.0 26 30-55 8-34 (460)
214 PRK06069 sdhA succinate dehydr 20.6 1.4E+02 0.0031 22.6 3.3 29 29-57 10-41 (577)
215 PRK07121 hypothetical protein; 20.6 1.9E+02 0.0041 21.3 3.9 29 28-56 24-52 (492)
216 PRK06522 2-dehydropantoate 2-r 20.4 1.6E+02 0.0034 19.8 3.3 26 30-55 6-31 (304)
217 PRK06115 dihydrolipoamide dehy 20.3 1.3E+02 0.0029 22.0 3.1 26 30-55 8-34 (466)
218 COG0445 GidA Flavin-dependent 20.3 1.1E+02 0.0024 24.1 2.7 26 30-55 10-35 (621)
219 PRK08762 molybdopterin biosynt 20.1 1.4E+02 0.0031 21.3 3.2 30 28-59 139-168 (376)
220 PF01134 GIDA: Glucose inhibit 20.0 1.2E+02 0.0025 22.5 2.7 23 32-54 6-29 (392)
No 1
>PRK09954 putative kinase; Provisional
Probab=99.65 E-value=4.8e-16 Score=109.09 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=60.7
Q ss_pred CEEcceeceeEeecC-CCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPS-IPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~-~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+|+|++++|++++++ +.|.+++ .+.++.+.+||+++|+|++++|||.++.|+|.||+|.+|+ .+++.||+
T Consensus 61 ~viG~~~vD~~~~~~~~~p~~~~-~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd 135 (362)
T PRK09954 61 VVVGAINMDIRGMADIRYPQAAS-HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVN 135 (362)
T ss_pred EEEEEEEEEEEEeeCCcCcCCCC-CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCC
Confidence 489999999999987 5555554 5668889999999999999999999999999999999998 56677773
No 2
>PRK11142 ribokinase; Provisional
Probab=99.63 E-value=9.8e-16 Score=104.26 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=64.0
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+|+|.+++|+++++++.|.+++.... +....+||++.|+|++|+|||.++.++|.+|+|.+|+ .+++.||+
T Consensus 6 ~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 81 (306)
T PRK11142 6 VVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID 81 (306)
T ss_pred EEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence 58999999999999998888877766 7888999999999999999999999999999999998 56677773
No 3
>PRK09850 pseudouridine kinase; Provisional
Probab=99.62 E-value=1.1e-15 Score=105.16 Aligned_cols=71 Identities=30% Similarity=0.453 Sum_probs=62.8
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+|+|++++|++++++.+++.+++++.+....+||+++|+|++++|||.++.+++.||+|.+|+ .+++.||+
T Consensus 8 ~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd 82 (313)
T PRK09850 8 VIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVY 82 (313)
T ss_pred EEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCCC
Confidence 589999999999977766667777778889999999999999999999999999999999997 56677774
No 4
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.61 E-value=2.3e-15 Score=102.23 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=63.1
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|+++++++.|.+++.... +....+||+++|+|++++|||.++.+++++|+|++|+ .+++.||
T Consensus 3 ~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gI 77 (290)
T cd01939 3 LCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGI 77 (290)
T ss_pred EEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCC
Confidence 58999999999999998888776655 6778899999999999999999999999999999998 6677777
No 5
>PTZ00292 ribokinase; Provisional
Probab=99.60 E-value=2.7e-15 Score=103.42 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=63.4
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|+++++++.|.++++... ++...+||++.|+|++|+|||.++.++|.||+|.+|+ .+++.||
T Consensus 19 lviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~GI 93 (326)
T PTZ00292 19 VVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNGV 93 (326)
T ss_pred EEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcCC
Confidence 58999999999999998888877766 6788999999999999999999999999999999998 5666777
No 6
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.59 E-value=3.9e-15 Score=100.78 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=62.6
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++.++++.|.+++.... ++...+|| +.|+|++++|||.++.+++.+|+|.+|+ .+++.||
T Consensus 3 ~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi 76 (289)
T cd01944 3 LVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGI 76 (289)
T ss_pred EEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCC
Confidence 58999999999999988888777666 78899999 9999999999999999999999999997 6677777
No 7
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.59 E-value=3.1e-15 Score=100.95 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=63.2
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++...++.|.+++.+.. +....+||++.|+|++++|||.++.+++.+|+|.+|+ .+++.||
T Consensus 3 l~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi 77 (292)
T cd01174 3 VVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGI 77 (292)
T ss_pred EEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCC
Confidence 58999999999999888888777776 7789999999999999999999999999999999997 5666777
No 8
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.59 E-value=3.7e-15 Score=99.82 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=57.8
Q ss_pred CEEcceeceeEeecCCCCCCCccee-ceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
+|+|.+++|++.+++++|.+++... .++...+||+++|+|++++|||.++.++|.||+|.+|+
T Consensus 3 l~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~ 66 (265)
T cd01947 3 AVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGI 66 (265)
T ss_pred EEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHH
Confidence 5899999999999998888875544 48899999999999999999999999999999999998
No 9
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.6e-15 Score=107.08 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=63.4
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|++++|++.++.+.|.++++... .+...+||+++|+|++++|||.+++|||+||+|.||+ .+++.+|
T Consensus 13 v~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V 87 (330)
T KOG2855|consen 13 VVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGV 87 (330)
T ss_pred EEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCc
Confidence 58999999999999999999887766 8999999999999999999999999999999999998 4455554
No 10
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.58 E-value=2.8e-15 Score=102.69 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=60.1
Q ss_pred CEEcceeceeEeecCCCC------CCCcceec------------eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhc
Q 035064 1 MIIGGMVLDIHATPSIPA------NPRTTTLG------------KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEI 62 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~------~~~~~~~~------------~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G 62 (74)
+|+|++++|+++++++.| .++++... +....+||+++|+|++++|||.++.|++++|+|.+|
T Consensus 5 ~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g 84 (312)
T cd01168 5 LGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDDKLG 84 (312)
T ss_pred EEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccChhH
Confidence 589999999999999877 44544443 267889999999999999999999999999999999
Q ss_pred c----cHHhcCc
Q 035064 63 Y----CWNTGNL 70 (74)
Q Consensus 63 ~----~~~~~~~ 70 (74)
+ .+++.||
T Consensus 85 ~~i~~~l~~~GV 96 (312)
T cd01168 85 DFLLKDLRAAGV 96 (312)
T ss_pred HHHHHHHHHCCC
Confidence 8 5667787
No 11
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.56 E-value=1.5e-14 Score=97.38 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=61.7
Q ss_pred CEEcceeceeEeecCCCCCCCccee-ceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++.++++.|.+++... .++...+||++.|+|.+++|||.++.+++.+|+|.+|+ .+++.||
T Consensus 3 ~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI 77 (284)
T cd01945 3 LGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGV 77 (284)
T ss_pred EEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCC
Confidence 5899999999999988777766544 48899999999999999999999999999999999998 4466777
No 12
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.55 E-value=1.7e-14 Score=96.75 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=62.1
Q ss_pred CEEcceeceeEeecCCCCCCCccee-ceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|+++++++.|.+++... .+....+||++.|+|++++|||.++.++|.+|+|.+|+ .++..||
T Consensus 3 ~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi 77 (279)
T cd01942 3 AVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGV 77 (279)
T ss_pred EEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCC
Confidence 5899999999999998887765444 48899999999999999999999999999999999996 6667777
No 13
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.55 E-value=1.5e-14 Score=97.36 Aligned_cols=71 Identities=31% Similarity=0.407 Sum_probs=62.8
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+++|.+++|++...++.|.+++..+.+....+||.++|+|++++|||.++.+++++|+|.+|+ .+++.||+
T Consensus 3 ~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~ 77 (288)
T cd01941 3 VVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLN 77 (288)
T ss_pred EEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCc
Confidence 589999999999999877777776667788899999999999999999999999999999998 45667773
No 14
>PTZ00247 adenosine kinase; Provisional
Probab=99.50 E-value=4.6e-14 Score=98.43 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=59.3
Q ss_pred CEEcceeceeEeecCC------CCCCCcceec-e--------------eEEecCChHHHHHHHHHHcC---C-CcEEEEE
Q 035064 1 MIIGGMVLDIHATPSI------PANPRTTTLG-K--------------ANYVLGGVARNVAECMSKLG---A-KPYMISA 55 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~------~~~~~~~~~~-~--------------~~~~~GG~a~N~A~~larLG---~-~~~lv~~ 55 (74)
+|+|++++|+++++++ .|..+++... + .+..+||+++|+|++++||| . ++.|+|+
T Consensus 9 ~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v~~ig~ 88 (345)
T PTZ00247 9 LGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFVCYVGC 88 (345)
T ss_pred EEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 5899999999999885 4666665554 3 37889999999999999885 5 9999999
Q ss_pred ecCChhcc----cHHhcCcc
Q 035064 56 LGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 56 vG~D~~G~----~~~~~~~~ 71 (74)
||+|.+|+ .+++.||+
T Consensus 89 vG~D~~G~~i~~~l~~~GVd 108 (345)
T PTZ00247 89 VGDDRFAEILKEAAEKDGVE 108 (345)
T ss_pred eccchhHHHHHHHHHHcCCe
Confidence 99999998 56777773
No 15
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.48 E-value=6.5e-14 Score=101.28 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred CEEcceeceeEeecCC-------CCCCC-------------cceec-eeEEecCChHHHHHHHHHHcC--------CCcE
Q 035064 1 MIIGGMVLDIHATPSI-------PANPR-------------TTTLG-KANYVLGGVARNVAECMSKLG--------AKPY 51 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~-------~~~~~-------------~~~~~-~~~~~~GG~a~N~A~~larLG--------~~~~ 51 (74)
+++|++++|++..+++ .|+.+ ++... ++...+||+++|+|++++||| .++.
T Consensus 73 l~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~~~~~v~ 152 (426)
T PLN02813 73 LGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGPALNVA 152 (426)
T ss_pred EEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccCCCCcEE
Confidence 5899999999999998 77766 22233 567889999999999999999 7999
Q ss_pred EEEEecCChhcc----cHHhcCcc
Q 035064 52 MISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 52 lv~~vG~D~~G~----~~~~~~~~ 71 (74)
|+|+||+|.+|+ .+++.||+
T Consensus 153 ~ig~VG~D~~G~~i~~~L~~~GVd 176 (426)
T PLN02813 153 MAGSVGSDPLGDFYRTKLRRANVH 176 (426)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCc
Confidence 999999999998 66677773
No 16
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.48 E-value=7.8e-14 Score=93.97 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=61.3
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++...+.+ .++.....+....+||.+.|+|++++|||.++.+++.+|+|.+|+ .+++.|+
T Consensus 5 ~~iG~~~iD~~~~~~~~-~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv 77 (301)
T PF00294_consen 5 LVIGEVNIDIIGYVDRF-KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGV 77 (301)
T ss_dssp EEESEEEEEEEEESSSH-TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTE
T ss_pred EEECccceEEEeecCCc-CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhccccccc
Confidence 58999999999999987 555555558999999999999999999999999999999999998 6677777
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.47 E-value=7.2e-14 Score=95.54 Aligned_cols=70 Identities=30% Similarity=0.320 Sum_probs=61.1
Q ss_pred CEEcceeceeEee-cCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHAT-PSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~-~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+++|.+++|++.+ .+.+|.+++.... .....+||+++|+|++++|||.++.|+++||+|.+|+ .++++||
T Consensus 3 ~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GV 78 (311)
T COG0524 3 VVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGV 78 (311)
T ss_pred EEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCC
Confidence 4899999999997 5566777666665 6788899999999999999999999999999999997 6777787
No 18
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.44 E-value=3e-13 Score=91.56 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=60.9
Q ss_pred cceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 4 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 4 G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
|.+++|+++.++++|.+++.+.. ++...+||++.|+|++++|||.++.+++.+|+|.+|+ .++..||
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi 72 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGI 72 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCC
Confidence 78999999999999988888877 7889999999999999999999999999999999998 5566676
No 19
>PLN02967 kinase
Probab=99.43 E-value=1.7e-13 Score=102.69 Aligned_cols=70 Identities=21% Similarity=0.137 Sum_probs=57.4
Q ss_pred CEEcceeceeEee--cCCCCCCC---------cceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cH
Q 035064 1 MIIGGMVLDIHAT--PSIPANPR---------TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CW 65 (74)
Q Consensus 1 ~vvG~~~~D~~~~--~~~~~~~~---------~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~ 65 (74)
+|+|.+++|++-. ....+... ++++..+...+||+++|+|++|+|||.++.|+|+||+|.+|+ .+
T Consensus 200 ~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L 279 (581)
T PLN02967 200 CCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYL 279 (581)
T ss_pred EEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 5899999999553 22222222 456778899999999999999999999999999999999998 67
Q ss_pred HhcCc
Q 035064 66 NTGNL 70 (74)
Q Consensus 66 ~~~~~ 70 (74)
+..||
T Consensus 280 ~~~GV 284 (581)
T PLN02967 280 NVNKV 284 (581)
T ss_pred HHcCC
Confidence 77888
No 20
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.42 E-value=2.4e-13 Score=99.19 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=57.4
Q ss_pred CEEcceeceeEeecCCCCCCCcce------------eceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----c
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTT------------LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----C 64 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~------------~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~ 64 (74)
+++|++++|+++.+++.|.+++.. +......+|| ++|+|++++|||.++.++|.||+|.+|+ .
T Consensus 76 l~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G~~i~~~ 154 (470)
T PLN02341 76 ATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYGKFLLDV 154 (470)
T ss_pred EEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHHHHHHHH
Confidence 589999999999999988876421 1234556788 6899999999999999999999999998 5
Q ss_pred HHhcCc
Q 035064 65 WNTGNL 70 (74)
Q Consensus 65 ~~~~~~ 70 (74)
+++.||
T Consensus 155 L~~~GV 160 (470)
T PLN02341 155 LAEEGI 160 (470)
T ss_pred HHHcCC
Confidence 667777
No 21
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.39 E-value=5.8e-13 Score=90.42 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=57.4
Q ss_pred cceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 4 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 4 G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
=+.++|+++++++.| +++.+.. +....+||+++|+|++++|||.++.|+++||+| +|+ .+++.||
T Consensus 6 ~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gI 75 (304)
T TIGR03828 6 LNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGI 75 (304)
T ss_pred cchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCC
Confidence 357899999999987 7777766 888999999999999999999999999999999 587 6667777
No 22
>PLN02323 probable fructokinase
Probab=99.39 E-value=4.3e-13 Score=92.72 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=56.5
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+++|.+++|++..+++.|.. ...++...+||+++|+|++++|||.++.+++.||+|.+|+ .|++.||
T Consensus 14 ~~iG~~~vD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI 84 (330)
T PLN02323 14 VCFGEMLIDFVPTVSGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGV 84 (330)
T ss_pred EEechhhhhhccCCCCCCcc---cccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCC
Confidence 58999999999877655432 1225678899999999999999999999999999999997 7778887
No 23
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.39 E-value=5.9e-13 Score=90.24 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=57.9
Q ss_pred EEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 2 IIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 2 vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
++++.++|++++++++|. ++.... +....+||+++|+|++|+|||.++.|++.+|+| +|+ .+++.||
T Consensus 5 ~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi 76 (289)
T cd01164 5 VTLNPAIDLTIELDQLQP-GEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGI 76 (289)
T ss_pred EecChHHeEEEEcCcccC-CceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCC
Confidence 678999999999999864 444444 788999999999999999999999999999999 787 5666777
No 24
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.38 E-value=5.4e-13 Score=89.92 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=54.8
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++...+.. ...+.+....+||+++|+|++++|||.++.++|.+|+|.+|+ .+++.|+
T Consensus 3 ~~iG~~~iD~~~~~~~~----~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi 72 (294)
T cd01166 3 VTIGEVMVDLSPPGGGR----LEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGV 72 (294)
T ss_pred EEechhheeeecCCCCc----cchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCC
Confidence 58999999998765421 233346778899999999999999999999999999999997 5567777
No 25
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.36 E-value=2.1e-12 Score=88.29 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=54.2
Q ss_pred CEEcceeceeEee--cCCC-C-CCCccee-ceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHAT--PSIP-A-NPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~--~~~~-~-~~~~~~~-~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+++|.+++|.+++ +.+. | .+..... ....+.+|| ++|+|.+++|||.++.++|.||+|.+|+ .+++.||+
T Consensus 11 l~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~ 89 (315)
T TIGR02198 11 LVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGID 89 (315)
T ss_pred EEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHHCCCC
Confidence 5899999999988 3332 1 1222222 356777999 7999999999999999999999999997 55677874
No 26
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.36 E-value=2.2e-12 Score=87.61 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=54.0
Q ss_pred CEEcceeceeEeecC--CCCCCCc---ceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPS--IPANPRT---TTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~--~~~~~~~---~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++++.+ +.|++.. .........+|| ++|+|.+|+|||.++.+++.+|+|.+|+ .+++.||
T Consensus 3 l~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~gI 80 (304)
T cd01172 3 LVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEGI 80 (304)
T ss_pred EEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCCC
Confidence 589999999999853 3322221 122356778999 5899999999999999999999999998 5567777
No 27
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.36 E-value=2e-12 Score=93.52 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=55.1
Q ss_pred CEEcceeceeEeecC--CC-C-CCCccee-ceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPS--IP-A-NPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~--~~-~-~~~~~~~-~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++++.+ +. | .+..... .+....+|| ++|+|++|+|||.++.|+|.+|+|.+|+ .+++.||
T Consensus 14 lviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~gI 91 (473)
T PRK11316 14 LVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAAVGV 91 (473)
T ss_pred EEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHHcCC
Confidence 589999999999863 22 2 2232333 367888999 6999999999999999999999999998 6667777
No 28
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.36 E-value=1.3e-12 Score=88.23 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=54.6
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++..+++. +.+....+||+++|+|.++++||.++.+++.+|+|.+|+ .+++.|+
T Consensus 3 lviG~~~~D~~~~~~~~-------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi 69 (295)
T cd01167 3 VCFGEALIDFIPEGSGA-------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGV 69 (295)
T ss_pred EEEcceeEEEecCCCCC-------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCC
Confidence 58999999999766543 446778899999999999999999999999999999998 4566777
No 29
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.33 E-value=1.4e-12 Score=96.23 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=56.5
Q ss_pred CEEcceeceeEeecCCCCCC-----C------cceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cH
Q 035064 1 MIIGGMVLDIHATPSIPANP-----R------TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CW 65 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~-----~------~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~ 65 (74)
+|+|.+.+|++-.......+ - +-.+..+...+||+++|+|++++|||.++.|+|+||+|.+|+ .+
T Consensus 129 ~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L 208 (496)
T PLN02543 129 CCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMM 208 (496)
T ss_pred EEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 58999999998764421110 0 002236788899999999999999999999999999999998 67
Q ss_pred HhcCc-ccc
Q 035064 66 NTGNL-LAY 73 (74)
Q Consensus 66 ~~~~~-~~~ 73 (74)
++.|| .+|
T Consensus 209 ~~~GVDts~ 217 (496)
T PLN02543 209 NKERVQTRA 217 (496)
T ss_pred HHcCCcccc
Confidence 78888 444
No 30
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.29 E-value=6.9e-12 Score=83.54 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc--cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY--CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~--~~~~~~~ 70 (74)
+|+|.+++|++..+ .+....+||+++|+|++++|||.++.++|.+|+|.+|+ .+++.|+
T Consensus 3 l~iG~~~iD~~~~~-----------~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~~~~l~~~gv 63 (254)
T cd01937 3 VIIGHVTIDEIVTN-----------GSGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDKWSDLFDNGI 63 (254)
T ss_pred EEEcceeEEEEecC-----------CceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHHHHHHHHCCc
Confidence 58999999999763 13467899999999999999999999999999999997 5556666
No 31
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.26 E-value=1.2e-11 Score=84.96 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=55.9
Q ss_pred ceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc---cHHhcCcc
Q 035064 5 GMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY---CWNTGNLL 71 (74)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~---~~~~~~~~ 71 (74)
+-++|+++.+++.| +++.... +..+.+||+++|+|++++|||.++.++|.+|+|.+|+ .+++.||+
T Consensus 11 ~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~~~~l~~~gv~ 80 (312)
T PRK09513 11 NPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIA 80 (312)
T ss_pred ChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHHHHHHHHcCCC
Confidence 35789999999876 5655554 8899999999999999999999999999999999997 45566663
No 32
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.25 E-value=8.6e-12 Score=83.68 Aligned_cols=58 Identities=26% Similarity=0.183 Sum_probs=49.7
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+++|.+++|+..+.. +..+||++.|+|++++|||.++.++|+||+|.+|+ .+++.||+
T Consensus 4 ~~iG~~~~D~~~~~~-------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~ 65 (260)
T PRK09813 4 ATIGDNCVDIYPQLG-------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVD 65 (260)
T ss_pred EEeccceeeecccCC-------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCc
Confidence 589999999985431 25799999999999999999999999999999998 45677773
No 33
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.22 E-value=1.7e-11 Score=83.61 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=54.7
Q ss_pred ceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 5 GMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+.++|++++.+++ ..++.... +....+||.+.|+|++++|||.++.++|.+|+| +|+ .+++.|+
T Consensus 7 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI 75 (303)
T TIGR03168 7 NPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGI 75 (303)
T ss_pred chHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCC
Confidence 4578999999985 55666665 788999999999999999999999999999999 788 5666776
No 34
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.21 E-value=2.1e-11 Score=81.46 Aligned_cols=57 Identities=28% Similarity=0.238 Sum_probs=49.7
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++... ....+||+++|+|++++|||.++.+++.+|+|.+|+ .+++.||
T Consensus 3 ~~iG~~~~D~~~~~-------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI 63 (264)
T cd01940 3 AAIGDNVVDKYLHL-------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGV 63 (264)
T ss_pred EEEcceEEEEeccC-------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCC
Confidence 58999999998431 357799999999999999999999999999999998 5667777
No 35
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.21 E-value=2.9e-11 Score=82.45 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=50.7
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+++|.+++|++ |.++ .+....+||++.|+|++++|||.++.+++.+|+|.+|+ .++++||.
T Consensus 6 l~iG~~~iD~~------~~~~----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~ 70 (304)
T PRK09434 6 WVLGDAVVDLI------PEGE----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVD 70 (304)
T ss_pred EEecchheeee------cCCC----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCC
Confidence 58999999998 1111 23557799999999999999999999999999999997 56677873
No 36
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.19 E-value=5.8e-11 Score=75.68 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=49.2
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEE
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~ 54 (74)
+++|..++|.+++.+++|.+++.+.. +....+||++.|+|.+++|||.++.+++
T Consensus 3 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 3 LVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG 57 (196)
T ss_pred EEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE
Confidence 58999999999999988888766655 8899999999999999999999999988
No 37
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.19 E-value=3.9e-11 Score=82.35 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=53.4
Q ss_pred ceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 5 GMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+.++|+++..++.|..+ +++. ++...+||+++|+|++++|||.++.+++.+|+| +|+ .+++.||
T Consensus 7 ~p~~d~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV 75 (309)
T TIGR01231 7 NPSVDISYPLTALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDI 75 (309)
T ss_pred chHHeEEEEcCCeeeCc-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCC
Confidence 35689988888865555 5565 789999999999999999999999999999975 888 5667777
No 38
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.14 E-value=6.7e-11 Score=79.87 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=46.9
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|.+++|++-. + ..+....+||+++|+|++++||| ++.+++.+|+| +|+ .+++.|+
T Consensus 3 ~~~G~~~~D~~~~------~----~~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi 64 (277)
T cd01946 3 LVVGSVAFDAIET------P----FGKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNI 64 (277)
T ss_pred EEEEEeeeeeecC------C----CceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccC
Confidence 5899999999911 1 11245679999999999999998 79999999999 787 6667776
No 39
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=85.91 Aligned_cols=69 Identities=26% Similarity=0.424 Sum_probs=62.2
Q ss_pred CEEcceeceeEeecCCCCCC-CcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcC
Q 035064 1 MIIGGMVLDIHATPSIPANP-RTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGN 69 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~-~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~ 69 (74)
+|+|+..+|+.+..++..+. +.+++.......||+|+|.|.+++|||.++.||++||+|..++.+++..
T Consensus 344 v~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~~~ 413 (614)
T KOG3009|consen 344 VSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQNS 413 (614)
T ss_pred eeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhhhh
Confidence 58999999999999987665 7899999999999999999999999999999999999998888666543
No 40
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.10 E-value=2e-10 Score=78.80 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=52.8
Q ss_pred cceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 4 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 4 G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
-..++|.++..++.+..+ +++. +....+||+++|+|++++|||.++.++|.+|+ .+|+ .+++ ||
T Consensus 7 ~np~~D~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI 75 (309)
T PRK13508 7 LNPSIDISYPLDELKLDT-VNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QI 75 (309)
T ss_pred cChHHeEEEEeCCeeeCC-eEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CC
Confidence 456799999998875554 5554 78899999999999999999999999999996 6788 4455 66
No 41
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.06 E-value=4e-10 Score=79.60 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=44.7
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChh
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDME 61 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~ 61 (74)
+|+|.+++|++.++ ++. ....+||+++|+|++++|||.++.|+++||+|..
T Consensus 15 lvvG~~~~D~i~~~------g~~----~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~ 65 (335)
T PLN02630 15 LIVGNYCHDVLIQN------GSV----TAESLGGAASFISNVLDALSVECELVSKVGPDFL 65 (335)
T ss_pred EEEeeeeeeEEEeC------CcE----EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc
Confidence 58999999999885 221 4678999999999999999999999999999963
No 42
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.04 E-value=3.8e-10 Score=77.45 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=53.3
Q ss_pred eeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 6 MVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 6 ~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
-++|+++..++.+ +++.+.. +....+||++.|+|++++|||.++.+++.+|+ .+|+ .++..||
T Consensus 11 p~~d~~~~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv 78 (309)
T PRK10294 11 PSLDSATITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENV 78 (309)
T ss_pred hHHeEEEEeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCC
Confidence 3689999998875 5555544 78888999999999999999999999999996 7898 6667777
No 43
>PRK15074 inosine/guanosine kinase; Provisional
Probab=98.88 E-value=3.8e-09 Score=77.09 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred CEEcceeceeEeecCC-C-----CCCCcceec-e----------------eEEecCChHHHHHHHHHHcC-CCcEEEEEe
Q 035064 1 MIIGGMVLDIHATPSI-P-----ANPRTTTLG-K----------------ANYVLGGVARNVAECMSKLG-AKPYMISAL 56 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~-~-----~~~~~~~~~-~----------------~~~~~GG~a~N~A~~larLG-~~~~lv~~v 56 (74)
+++|+..+|+...++. + .+.+..... . ....+||+++|+|++++||| .++.|+|+|
T Consensus 37 ~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~~fig~V 116 (434)
T PRK15074 37 VGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRSVLLGVM 116 (434)
T ss_pred EEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCeEEEEEe
Confidence 4789999999998763 1 121222211 1 24458999999999999996 999999999
Q ss_pred cCC-hhccc----HH--hcCcc
Q 035064 57 GLD-MEIYC----WN--TGNLL 71 (74)
Q Consensus 57 G~D-~~G~~----~~--~~~~~ 71 (74)
|+| .+|+. ++ +.||.
T Consensus 117 GdDd~~G~~~~~~L~~~~~GVd 138 (434)
T PRK15074 117 SSNIEIGSYAYRYLCNTSSRTD 138 (434)
T ss_pred CCCHHHHHHHHHHhhhhhCCcc
Confidence 999 79984 33 35773
No 44
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=98.87 E-value=3.3e-09 Score=75.42 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=38.6
Q ss_pred eEEecCChHHHHHHHHHH-cCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 28 ANYVLGGVARNVAECMSK-LGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~lar-LG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
....+||+++|+|+++++ ||.++.|+|+||+|.+|+ .+++.||+
T Consensus 81 ~~~~~GGsa~N~a~~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~ 129 (367)
T PLN02379 81 IKTMAGGSVANTIRGLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVD 129 (367)
T ss_pred ceecCCCHHHHHHHHHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCC
Confidence 556799999999999996 999999999999999998 55666774
No 45
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=98.86 E-value=1.5e-09 Score=75.88 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=49.6
Q ss_pred CEEcceeceeEeecCCCCCCCcceeceeEEecCChHHHHHHHHHHc-CC--Cc--EEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKL-GA--KP--YMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~larL-G~--~~--~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+++|.+.+|++..... ..+...+||+++|+|++++|| |. ++ .+++.+|+| +|+ .+++.||
T Consensus 3 ~~~G~~~~d~i~~~~~---------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GV 71 (328)
T cd01943 3 TTLGMFIIDEIEYPDS---------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGT 71 (328)
T ss_pred cccCcEEeeccccCCC---------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCC
Confidence 5789999999887762 245677999999999999999 54 77 889999999 998 6677777
No 46
>PLN02548 adenosine kinase
Probab=98.82 E-value=1.7e-09 Score=74.90 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=37.8
Q ss_pred eeEEecCChHHHHHH---HHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 27 KANYVLGGVARNVAE---CMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 27 ~~~~~~GG~a~N~A~---~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+....+||+++|+|. .+++||.++.|+|.||+|.+|+ .++++||
T Consensus 46 ~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gV 96 (332)
T PLN02548 46 NVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGV 96 (332)
T ss_pred CceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCC
Confidence 678889999999754 4567799999999999999998 6677777
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=7.9e-09 Score=75.33 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=58.0
Q ss_pred CEEcceeceeEeecC-CCCCCCcceec----eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCcc
Q 035064 1 MIIGGMVLDIHATPS-IPANPRTTTLG----KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNLL 71 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~-~~~~~~~~~~~----~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~~ 71 (74)
+|+|.+.+|..++.. +...|+...|. +.+..+||. +|+|.+++.||.++.++|.+|+|..|+ .+...+++
T Consensus 14 LVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGA-aNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~~~~i~ 92 (467)
T COG2870 14 LVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGA-ANVAKNIASLGANAYLVGVVGKDEAGKALIELLKANGID 92 (467)
T ss_pred EEEcceeeeeeccccccccCCCCCCceEEecccccccccH-HHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHHhcCcc
Confidence 589999999999988 45555655542 566778887 699999999999999999999999998 45555655
Q ss_pred cc
Q 035064 72 AY 73 (74)
Q Consensus 72 ~~ 73 (74)
++
T Consensus 93 ~~ 94 (467)
T COG2870 93 SD 94 (467)
T ss_pred cc
Confidence 44
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=4e-06 Score=58.31 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=58.2
Q ss_pred CEEcceeceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc----cHHhcCc
Q 035064 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY----CWNTGNL 70 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~----~~~~~~~ 70 (74)
+|+|...+|++..++.+|.+++.... +-...-||.|+|+...+++||.++.|.|.+-.-..-+ -+++.|+
T Consensus 8 LcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgI 82 (308)
T KOG2947|consen 8 LCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGI 82 (308)
T ss_pred EEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCC
Confidence 58999999999999999988766554 5566789999999999999999999999998654444 4556665
No 49
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00015 Score=51.88 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=51.2
Q ss_pred EEcceeceeEeecCCC------CCCCcce--------------ec-eeEEecCChHHHHHHHHHHcCC---CcEEEEEec
Q 035064 2 IIGGMVLDIHATPSIP------ANPRTTT--------------LG-KANYVLGGVARNVAECMSKLGA---KPYMISALG 57 (74)
Q Consensus 2 vvG~~~~D~~~~~~~~------~~~~~~~--------------~~-~~~~~~GG~a~N~A~~larLG~---~~~lv~~vG 57 (74)
.+|...+|+...++.. .+.++.. .. ..+..+||++-|.+..+++++. ++.|+|+||
T Consensus 11 G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~GsvG 90 (343)
T KOG2854|consen 11 GLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGSVG 90 (343)
T ss_pred ccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEeecc
Confidence 3577788888877631 1111111 11 5678899999999999999999 899999999
Q ss_pred CChhcccH----HhcCc
Q 035064 58 LDMEIYCW----NTGNL 70 (74)
Q Consensus 58 ~D~~G~~~----~~~~~ 70 (74)
+|.+|+.+ +..||
T Consensus 91 ~Dk~ge~l~~~~~~aGv 107 (343)
T KOG2854|consen 91 KDKFGELLKSKARAAGV 107 (343)
T ss_pred CchHHHHHHHHHHhcCc
Confidence 99999944 45565
No 50
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00011 Score=52.11 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=51.8
Q ss_pred eceeEeecCCCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCCh---hcccHHhcCc
Q 035064 7 VLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDM---EIYCWNTGNL 70 (74)
Q Consensus 7 ~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~---~G~~~~~~~~ 70 (74)
.+|++++. +....++.+.. +....+||++.|+|..|++||.++.-.+.+|.+. +=+.++..|+
T Consensus 10 aiD~~~~l-~~l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi 76 (310)
T COG1105 10 ALDYTVFL-DELELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGI 76 (310)
T ss_pred hHhheeec-ccccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCC
Confidence 57888888 44556777776 8889999999999999999999999999999864 3347777777
No 51
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=73.44 E-value=4 Score=27.41 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.+|
T Consensus 17 ~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 17 SSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 789999999999998876
No 52
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=72.89 E-value=6.5 Score=22.29 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 33 GGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 33 GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
+|.+...+..+...|.++.+++.+|..++.. +++.|++-|
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~a~~~-l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGPAAAK-LEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCccHHHH-HHHcCCEEE
Confidence 3567789999999999999999999876654 777787644
No 53
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=71.15 E-value=3.7 Score=28.80 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 35 VARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
++.|+|++|++.|.+|.++ --|..|.
T Consensus 17 va~~lA~aLa~~G~kVg~l---D~Di~q~ 42 (261)
T PF09140_consen 17 VAVNLAVALARMGKKVGLL---DLDIRQP 42 (261)
T ss_dssp HHHHHHHHHHCTT--EEEE---E--TTT-
T ss_pred HHHHHHHHHHHCCCeEEEE---ecCCCCC
Confidence 3689999999999998765 3455444
No 54
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=65.51 E-value=7.3 Score=26.34 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHcCCCcEEE
Q 035064 35 VARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv 53 (74)
.+.|.|.+|++.|.+|.+|
T Consensus 17 ~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 17 TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 3689999999999998887
No 55
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=65.48 E-value=7.2 Score=26.36 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.++
T Consensus 18 a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 18 TQNLTAALSTMGNKILLV 35 (273)
T ss_pred HHHHHHHHHhhCCCeEEE
Confidence 689999999999999887
No 56
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=64.92 E-value=6.9 Score=25.47 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCcEEEEEecCChhcccHHhcCccc
Q 035064 37 RNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLA 72 (74)
Q Consensus 37 ~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~ 72 (74)
.|++..++-+|.+..+|-..|=|..-+.++.+|++.
T Consensus 17 GNI~R~ca~tga~LhlI~PlGF~l~dk~lkRAGlDY 52 (155)
T COG0219 17 GNIIRTCAATGAELHLIEPLGFDLDDKRLKRAGLDY 52 (155)
T ss_pred hHHHHHHHhcCCeEEEEccCCCccchhhhhhcccch
Confidence 499999999999999999999888777888888753
No 57
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=64.22 E-value=9.3 Score=27.00 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCCcEEEEE
Q 035064 35 VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~ 55 (74)
.++|++.++++.|.+|.+||+
T Consensus 16 ~~~Nlsaala~~G~kVl~iGC 36 (273)
T PF00142_consen 16 TASNLSAALAEMGKKVLQIGC 36 (273)
T ss_dssp HHHHHHHHHHHTT--EEEEEE
T ss_pred hhhHHHHHHHhccceeeEecc
Confidence 368999999999999988765
No 58
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=63.30 E-value=8.7 Score=23.85 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=35.6
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 31 VLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 31 ~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
..-|.+.-+|..|...|.++.+++.+|.-++.. |++.|++-|
T Consensus 49 ~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~-l~~~GIkv~ 90 (121)
T COG1433 49 AEKGAGIRIAELLVDEGVDVVIASNIGPNAYNA-LKAAGIKVY 90 (121)
T ss_pred ccCcchHHHHHHHHHcCCCEEEECccCHHHHHH-HHHcCcEEE
Confidence 347888889999999999999999999887765 888888655
No 59
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.29 E-value=9.6 Score=23.77 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.+|.++-
T Consensus 17 a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 17 AVNLALALAKLGYKVGLLD 35 (169)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 6899999999999999974
No 60
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=61.91 E-value=9 Score=25.27 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
.-...||.+.++|..|+|.|..
T Consensus 25 ~IvG~GglGs~ia~~La~~Gvg 46 (200)
T TIGR02354 25 AICGLGGLGSNVAINLARAGIG 46 (200)
T ss_pred EEECcCHHHHHHHHHHHHcCCC
Confidence 3566999999999999999984
No 61
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=61.87 E-value=20 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=37.5
Q ss_pred eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 27 KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 27 ~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
...+..|+.+.-+|+.++|+|.+...+-.--.--.|.-|..+|++.+
T Consensus 42 vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~ 88 (856)
T KOG2844|consen 42 VVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ 88 (856)
T ss_pred EEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee
Confidence 45666788889999999999999777776666667778888888655
No 62
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=61.81 E-value=9.3 Score=25.62 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.++
T Consensus 17 a~nLA~~la~~G~rvlli 34 (267)
T cd02032 17 SSNLSVALAKRGKKVLQI 34 (267)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 689999999999998876
No 63
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=60.90 E-value=9.6 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=21.3
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEEE
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv~ 54 (74)
-.....||. +.|.|.+++++|.+|.++=
T Consensus 61 ~V~S~kgGvGKStva~nLA~alA~~G~rVlliD 93 (265)
T COG0489 61 AVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLD 93 (265)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEe
Confidence 344455664 6899999999999988763
No 64
>PRK13236 nitrogenase reductase; Reviewed
Probab=60.33 E-value=10 Score=26.28 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.++
T Consensus 23 a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 23 SQNTLAAMAEMGQRILIV 40 (296)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 689999999999999887
No 65
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=60.27 E-value=11 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.++++.|.+|.+|
T Consensus 17 ~~nLA~~la~~G~rvLli 34 (212)
T cd02117 17 SQNLSAALAEMGKKVLQV 34 (212)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 589999999999998776
No 66
>PHA02518 ParA-like protein; Provisional
Probab=60.00 E-value=10 Score=24.09 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCChhc
Q 035064 36 ARNVAECMSKLGAKPYMISALGLDMEI 62 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~vG~D~~G 62 (74)
++|.|..+++.|.+|.++-. |..+
T Consensus 18 a~~la~~la~~g~~vlliD~---D~q~ 41 (211)
T PHA02518 18 ATNLASWLHADGHKVLLVDL---DPQG 41 (211)
T ss_pred HHHHHHHHHhCCCeEEEEeC---CCCC
Confidence 68999999999999888754 5544
No 67
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=59.25 E-value=10 Score=25.71 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.+|
T Consensus 18 a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 18 VCNIAAALAESGKKVLVV 35 (279)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 689999999999998877
No 68
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=58.17 E-value=12 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|.+|++.|.+|.+|=
T Consensus 19 ~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 19 SSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 6899999999999988873
No 69
>PRK11670 antiporter inner membrane protein; Provisional
Probab=58.04 E-value=11 Score=27.12 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=24.9
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
.+...=||+ +.|.|.+|++.|.+|.++= -|..|.
T Consensus 111 aV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID---~D~qgp 149 (369)
T PRK11670 111 AVSSGKGGVGKSSTAVNLALALAAEGAKVGILD---ADIYGP 149 (369)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEe---CCCCCC
Confidence 344456665 5899999999999988874 365554
No 70
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.03 E-value=11 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.+|
T Consensus 21 ~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 21 SQNTLAALVEMGQKILIV 38 (295)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 689999999999998887
No 71
>CHL00175 minD septum-site determining protein; Validated
Probab=57.39 E-value=21 Score=24.10 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.8
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEE
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv 53 (74)
.+.-.-||+ ++|.|.+|++.|.+|.++
T Consensus 19 ~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 19 VITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 445556776 789999999999998887
No 72
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=56.60 E-value=12 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|.+|++.|.+|.+|=
T Consensus 18 ~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 18 TQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred HHHHHHHHHhCCCeEEEEE
Confidence 6899999999999988773
No 73
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=56.36 E-value=12 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|.+|++.|.+|.++
T Consensus 17 a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 17 TQNIAAALAEMGKKVMIV 34 (275)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 589999999999998876
No 74
>PRK10037 cell division protein; Provisional
Probab=55.77 E-value=13 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..|++.|.+|.+|=
T Consensus 19 a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 19 TAALAWSLQMLGENVLVID 37 (250)
T ss_pred HHHHHHHHHhcCCcEEEEe
Confidence 6899999999999988873
No 75
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=54.57 E-value=14 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|.+|+++|.+|.+|-
T Consensus 17 a~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 17 SCNISIALARRGKKVLQIG 35 (290)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 7899999999999987763
No 76
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=54.18 E-value=19 Score=22.87 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.4
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 31 VLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 31 ~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
.+||+..|+|..+...+-++.+++-+
T Consensus 68 l~GGSP~N~A~~l~~~~~~~~viaGv 93 (143)
T COG2893 68 LFGGSPFNVASRLAMEGPRVEVIAGV 93 (143)
T ss_pred cCCCCHhHHHHHHHhhCCCceEEecC
Confidence 38999999999999999988777643
No 77
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=53.80 E-value=15 Score=24.78 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
+.|.|.++++.|.+|.+|-.
T Consensus 121 a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 121 AANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred HHHHHHHHHhcCCeEEEEeC
Confidence 68999999999999998844
No 78
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=53.51 E-value=16 Score=22.46 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.+|.++-
T Consensus 17 a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 17 TANLGTALAQLGYKVVLID 35 (179)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 7899999999999999984
No 79
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=53.18 E-value=16 Score=25.25 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
++|.|.+|+|+|.+|..|=.
T Consensus 19 tAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 19 TANLAWALARLGESVLAIDL 38 (243)
T ss_pred HHHHHHHHHHCCCcEEEEeC
Confidence 58999999999999877643
No 80
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=50.97 E-value=19 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.6
Q ss_pred eEEecCChHHHHHHHHHHcCC
Q 035064 28 ANYVLGGVARNVAECMSKLGA 48 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~ 48 (74)
.-...||.|..+|.+|+|.|.
T Consensus 34 lVvG~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 34 CVVGIGGVGSWAAEALARTGI 54 (268)
T ss_pred EEECcCHHHHHHHHHHHHcCC
Confidence 456799999999999999995
No 81
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=50.45 E-value=18 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.+|.++-
T Consensus 18 a~~LA~~la~~g~~VlliD 36 (251)
T TIGR01969 18 TANLGVALAKLGKKVLALD 36 (251)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 6899999999999988873
No 82
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.96 E-value=21 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
+.|.|..+++.|.+|.++-.
T Consensus 19 a~nla~~la~~g~~VlliD~ 38 (246)
T TIGR03371 19 TANLASALKLLGEPVLAIDL 38 (246)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 68999999999999888754
No 83
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=48.50 E-value=19 Score=26.95 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=27.8
Q ss_pred eEEecCChHHHHHHHHHHcCC-CcEEEEEecCChh
Q 035064 28 ANYVLGGVARNVAECMSKLGA-KPYMISALGLDME 61 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~-~~~lv~~vG~D~~ 61 (74)
.+...||-|.-+|..++++|. +|.+.+++.....
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~ 135 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQ 135 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHH
Confidence 357899999999999999999 8887777654433
No 84
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=48.43 E-value=25 Score=19.85 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 34 GVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 34 G~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
+.....+..|...+.++.+++.+|.-.+- .+++.|++-|
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~~~~-~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPRALN-KLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcCHHH-HHHHCCCEEE
Confidence 44577888888899999999999966544 4777777543
No 85
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=47.21 E-value=28 Score=21.20 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=23.2
Q ss_pred eEEecCChHHHHHHHHHHcCCC-cEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAK-PYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~-~~lv~~ 55 (74)
.-+..||.+.-++.+|+.+|.+ +.++.+
T Consensus 16 lviGaGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 16 LVIGAGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp EEESSSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred EEECCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4567899999999999999998 666554
No 86
>PRK10262 thioredoxin reductase; Provisional
Probab=46.54 E-value=44 Score=22.84 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=22.3
Q ss_pred ceeEEecCC-hHHHHHHHHHHcCCCcEEEE
Q 035064 26 GKANYVLGG-VARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 26 ~~~~~~~GG-~a~N~A~~larLG~~~~lv~ 54 (74)
.++-+.-|| .+.+.|..++|.|.++.++-
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 355666677 45788899999999988874
No 87
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=46.43 E-value=24 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHcCCCcEEEEE
Q 035064 35 VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~ 55 (74)
.+.|.|.++++.|.+|.+|-.
T Consensus 34 ~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 34 TSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred HHHHHHHHHHhCCCeEEEEeC
Confidence 368999999999999888743
No 88
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=45.76 E-value=22 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
.+|.+.+||++|.++.+|-
T Consensus 20 tAnig~aLA~~GkKv~liD 38 (272)
T COG2894 20 TANIGTALAQLGKKVVLID 38 (272)
T ss_pred hHHHHHHHHHcCCeEEEEe
Confidence 4899999999999999873
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=45.05 E-value=28 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred EEecCChHHHHHHHHHHcCCC
Q 035064 29 NYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~ 49 (74)
-+..||.+..+|.+|+|.|..
T Consensus 4 ViG~GglGs~ia~~La~~Gvg 24 (174)
T cd01487 4 IAGAGGLGSNIAVLLARSGVG 24 (174)
T ss_pred EECcCHHHHHHHHHHHHcCCC
Confidence 356899999999999999985
No 90
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=44.96 E-value=21 Score=25.19 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 36 ARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
..|+|.+|+.+|.++.++ |-|+-.+
T Consensus 18 s~N~aAAla~~GkkVl~v---GCDPKaD 42 (278)
T COG1348 18 SQNLAAALAELGKKVLIV---GCDPKAD 42 (278)
T ss_pred HHHHHHHHHHcCCeEEEE---cCCCCcc
Confidence 579999999999998876 5576555
No 91
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=44.89 E-value=6.7 Score=24.12 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.3
Q ss_pred EEecCChhcc-cHHhcCcccc
Q 035064 54 SALGLDMEIY-CWNTGNLLAY 73 (74)
Q Consensus 54 ~~vG~D~~G~-~~~~~~~~~~ 73 (74)
-+||.|.||. +++..|++++
T Consensus 14 ~kvGeDefgN~Yye~r~~ds~ 34 (118)
T COG3761 14 KKVGEDEFGNVYYEGRNIDSE 34 (118)
T ss_pred HhccchhccceeeeccCCccC
Confidence 5789999997 5555576654
No 92
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.48 E-value=26 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.2
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
.-...||.+..+|.+|+|+|..
T Consensus 25 livG~GglGs~va~~La~~Gvg 46 (228)
T cd00757 25 LVVGAGGLGSPAAEYLAAAGVG 46 (228)
T ss_pred EEECCCHHHHHHHHHHHHcCCC
Confidence 4566999999999999999974
No 93
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=43.95 E-value=26 Score=24.42 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
+.|.|.+|++.|.+|.++-.
T Consensus 17 a~nLA~~La~~g~rVLlID~ 36 (296)
T TIGR02016 17 TTNLSHMMAEMGKRVLQLGC 36 (296)
T ss_pred HHHHHHHHHHCCCeEEEEEe
Confidence 68999999999999877643
No 94
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=43.64 E-value=63 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=23.4
Q ss_pred ceeEEecCC-hHHHHHHHHHHc--CCCcEEEEE
Q 035064 26 GKANYVLGG-VARNVAECMSKL--GAKPYMISA 55 (74)
Q Consensus 26 ~~~~~~~GG-~a~N~A~~larL--G~~~~lv~~ 55 (74)
.++-+.-|| .+..+|+.|++- |.+|.++=+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~ 57 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA 57 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 355566656 799999999998 889988753
No 95
>PRK08328 hypothetical protein; Provisional
Probab=42.90 E-value=29 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=19.7
Q ss_pred eEEecCChHHHHHHHHHHcCCCc
Q 035064 28 ANYVLGGVARNVAECMSKLGAKP 50 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~ 50 (74)
.-...||.|.++|.+|+|.|..-
T Consensus 31 lIiG~GGlGs~ia~~La~~Gvg~ 53 (231)
T PRK08328 31 AVVGVGGLGSPVAYYLAAAGVGR 53 (231)
T ss_pred EEECCCHHHHHHHHHHHHcCCCE
Confidence 45668999999999999999853
No 96
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=42.60 E-value=8.6 Score=21.47 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 31 VLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 31 ~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
..++.+...+-.|...|.++.+++.+|...+- .+++.|++-|
T Consensus 37 ~~~~~~~~~~~~l~~~~v~~li~~~iG~~~~~-~L~~~gI~v~ 78 (94)
T PF02579_consen 37 EGGGGGDKIAKFLAEEGVDVLICGGIGEGAFR-ALKEAGIKVY 78 (94)
T ss_dssp CSSCHSTHHHHHHHHTTESEEEESCSCHHHHH-HHHHTTSEEE
T ss_pred cccccchhHHHHHHHcCCCEEEEeCCCHHHHH-HHHHCCCEEE
Confidence 34677788888888899999999999876554 4777777543
No 97
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=42.55 E-value=32 Score=23.22 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
++|.|..+++.|.++.+++.
T Consensus 17 a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 17 SAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred HHHHHHHHHHCCCCceEEeC
Confidence 78999999999999999973
No 98
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=42.24 E-value=35 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=27.3
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGL 58 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~ 58 (74)
+.+..|+.+.+.|+.++..|.+|.++++.=-
T Consensus 10 vVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 10 VVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred EEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4567899999999999999999999998743
No 99
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=42.19 E-value=31 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
++|.|..+++.|.+|.++-.
T Consensus 16 a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 16 AANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp HHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHhcccccccccccccc
Confidence 58999999999999998865
No 100
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=41.76 E-value=31 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.+|.++-
T Consensus 19 a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 19 TANLGTALARLGKKVVLID 37 (261)
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 6899999999999988873
No 101
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=41.76 E-value=30 Score=20.84 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=21.6
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
-...||.+..+|.+|+|.|.. -+.-+-+|
T Consensus 7 iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d 35 (135)
T PF00899_consen 7 IIGAGGVGSEVAKNLARSGVG--KITLVDDD 35 (135)
T ss_dssp EESTSHHHHHHHHHHHHHTTS--EEEEEESS
T ss_pred EECcCHHHHHHHHHHHHhCCC--ceeecCCc
Confidence 356899999999999999993 33334444
No 102
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=41.51 E-value=29 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.9
Q ss_pred hHHHHHHHHHH-cCCCcEEE
Q 035064 35 VARNVAECMSK-LGAKPYMI 53 (74)
Q Consensus 35 ~a~N~A~~lar-LG~~~~lv 53 (74)
.+.|.|.+|++ .|.+|.++
T Consensus 18 ~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 18 TTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred HHHHHHHHHHHhcCCeEEEe
Confidence 36899999998 59998776
No 103
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=41.22 E-value=29 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.3
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
.-...||.+..+|.+|++.|..
T Consensus 25 lviG~GglGs~ia~~La~~Gv~ 46 (202)
T TIGR02356 25 LIIGAGGLGSPAALYLAGAGVG 46 (202)
T ss_pred EEECCCHHHHHHHHHHHHcCCC
Confidence 4567999999999999999973
No 104
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=40.68 E-value=31 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.3
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEEE
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv~ 54 (74)
.+.-.-||+ +.|.|.+|++.|.+|.+|=
T Consensus 108 ~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID 140 (387)
T TIGR03453 108 AVTNFKGGSGKTTTAAHLAQYLALRGYRVLAID 140 (387)
T ss_pred EEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 455567776 6899999999999988773
No 105
>PRK12831 putative oxidoreductase; Provisional
Probab=40.50 E-value=69 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=22.9
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
++-+.-|| .+...|..|+++|.++.++-+
T Consensus 142 ~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 56666667 457889999999999988853
No 106
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=39.80 E-value=52 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=21.6
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| ++.-.|.+|+|.|.+|.++-.
T Consensus 5 VIGgGlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 5 VIGGGLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 44455 788999999999999999974
No 107
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=39.78 E-value=40 Score=25.46 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYM 52 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~l 52 (74)
.+...||.|..+|..++++|.++.+
T Consensus 86 ~~~rmGGnAgimAn~la~lg~~~Vi 110 (453)
T PRK14039 86 SEIRMGGNAGIMANVLSELGASRVV 110 (453)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEE
Confidence 3678999999999999999999655
No 108
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=39.61 E-value=56 Score=23.07 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.4
Q ss_pred EEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
-+.-|| .++.+|..|++.|.+|.++=+
T Consensus 5 vIIGaG~~G~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 5 AVIGAGITGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 344455 789999999999999988853
No 109
>PRK06153 hypothetical protein; Provisional
Probab=39.30 E-value=29 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=22.7
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
-+..||.|..++..|+|+|.. =+.-+-.|.
T Consensus 181 IVG~GG~GS~Va~~LAR~GVg--eI~LVD~D~ 210 (393)
T PRK06153 181 IIGLGGTGSYILDLVAKTPVR--EIHLFDGDD 210 (393)
T ss_pred EEcCCccHHHHHHHHHHcCCC--EEEEECCCE
Confidence 466999999999999999973 344454553
No 110
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=39.07 E-value=29 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.2
Q ss_pred EecCChHHHHHHHHHHcCCCc--EEEEEecC
Q 035064 30 YVLGGVARNVAECMSKLGAKP--YMISALGL 58 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~--~lv~~vG~ 58 (74)
...||.|.-+|..+++||.++ .++..++.
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~ 116 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK 116 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 579999999999999999985 44554543
No 111
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=39.05 E-value=32 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEecCChHHHHHHHHHHcCCC--cEEEEEecC
Q 035064 29 NYVLGGVARNVAECMSKLGAK--PYMISALGL 58 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~--~~lv~~vG~ 58 (74)
....||.|.-+|..++++|.+ +.++..++.
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk 129 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSK 129 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 457999999999999999998 455555554
No 112
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=39.03 E-value=41 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.9
Q ss_pred ecCCh-----HHHHHHHHHHcCCCcEEEEE
Q 035064 31 VLGGV-----ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 31 ~~GG~-----a~N~A~~larLG~~~~lv~~ 55 (74)
.-||. ++|.|.++++.|.+|.++..
T Consensus 38 gkgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 38 GKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 46775 78999999999999998854
No 113
>PRK10818 cell division inhibitor MinD; Provisional
Probab=38.96 E-value=34 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
+.|.|.++++.|.+|.++-.
T Consensus 20 a~nlA~~la~~g~~vllvD~ 39 (270)
T PRK10818 20 SAAIATGLAQKGKKTVVIDF 39 (270)
T ss_pred HHHHHHHHHHCCCeEEEEEC
Confidence 58999999999998877643
No 114
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=37.53 E-value=36 Score=22.90 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=26.7
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCc
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNL 70 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~ 70 (74)
-+.+|.++.++|..|.+.|.++.-++ |..|..+...|+
T Consensus 36 I~G~G~VG~~~a~~L~~~g~~vv~v~----D~~g~~~~~~Gl 73 (227)
T cd01076 36 IQGFGNVGSHAARFLHEAGAKVVAVS----DSDGTIYNPDGL 73 (227)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEE----CCCCeEECCCCC
Confidence 34589999999999999998876554 334444444443
No 115
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=37.42 E-value=44 Score=23.64 Aligned_cols=30 Identities=17% Similarity=-0.055 Sum_probs=23.4
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEecC
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALGL 58 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG~ 58 (74)
.+..|..+...|+.+++.|.+|.++.+-..
T Consensus 4 VIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 4 VIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp EE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred EECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 345677899999999999999999987543
No 116
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=37.40 E-value=63 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEecCC-hHHHHHHHHHHcCCCcEEEEEec
Q 035064 29 NYVLGG-VARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 29 ~~~~GG-~a~N~A~~larLG~~~~lv~~vG 57 (74)
-+.-|| .+.-.|..|+|.|.++.++=+-.
T Consensus 5 ~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 5 AIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 344556 56788999999999988886543
No 117
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=36.69 E-value=88 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.6
Q ss_pred eeEEecCC-----hHHHHHHHHHHcCCCcEEE
Q 035064 27 KANYVLGG-----VARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 27 ~~~~~~GG-----~a~N~A~~larLG~~~~lv 53 (74)
.+.-.=|| .+.|.|..|++.|.+|.+|
T Consensus 125 av~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 125 AVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 45555688 4689999999999998876
No 118
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=36.65 E-value=45 Score=25.92 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=25.8
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
+.+..|+.+.-.|+.++..|.+|.++++....
T Consensus 9 lVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 9 LVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 34557778889999999999999999876543
No 119
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=36.60 E-value=49 Score=22.39 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=22.8
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-...||.+..+|.+|+|.|.. =+.-+-.|.
T Consensus 15 lVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~ 45 (231)
T cd00755 15 AVVGLGGVGSWAAEALARSGVG--KLTLIDFDV 45 (231)
T ss_pred EEECCCHHHHHHHHHHHHcCCC--EEEEECCCE
Confidence 4567999999999999999973 333444443
No 120
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=35.86 E-value=49 Score=23.38 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=28.0
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEEecCChhccc
Q 035064 31 VLGGVARNVAECMSKLGAKPYMISALGLDMEIYC 64 (74)
Q Consensus 31 ~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~ 64 (74)
+-=|+ -|..--|.|.+.+.+|.-.+|-|..|+.
T Consensus 16 ~~~g~-~~~~~~~~~~~~~a~f~~~~gpd~~g~~ 48 (296)
T PRK15394 16 TREGV-PRLLEILSKHGIQASFFFSVGPDNMGRH 48 (296)
T ss_pred cccCH-HHHHHHHHHcCCCEEEEeccCCCchhHH
Confidence 33455 4888889999999999999999999973
No 121
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=35.75 E-value=48 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.0
Q ss_pred EecCChHHHHHHHHHHcCCC
Q 035064 30 YVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~ 49 (74)
...||.+..+|.+|+|.|..
T Consensus 5 iG~GglGs~ia~~L~~~Gv~ 24 (143)
T cd01483 5 VGLGGLGSEIALNLARSGVG 24 (143)
T ss_pred ECCCHHHHHHHHHHHHCCCC
Confidence 45899999999999999994
No 122
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=34.87 E-value=54 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=23.0
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-...||.|.++|.+|+|.|..- +.-+-.|.
T Consensus 28 lvvG~GglGs~va~~La~~Gvg~--i~lvD~D~ 58 (240)
T TIGR02355 28 LIVGLGGLGCAASQYLAAAGVGN--LTLLDFDT 58 (240)
T ss_pred EEECcCHHHHHHHHHHHHcCCCE--EEEEeCCc
Confidence 45668999999999999999753 33454443
No 123
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=34.22 E-value=49 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
.-...||.+.++|..|++.|.. -+.-|-+|
T Consensus 28 lVvG~GglGs~va~~La~aGvg--~i~lvD~D 57 (339)
T PRK07688 28 LIIGAGALGTANAEMLVRAGVG--KVTIVDRD 57 (339)
T ss_pred EEECCCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence 4566999999999999999983 34444444
No 124
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=34.08 E-value=45 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=19.9
Q ss_pred eEEecCCh-----HHHHHHHHHHcCCCcEEE
Q 035064 28 ANYVLGGV-----ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 28 ~~~~~GG~-----a~N~A~~larLG~~~~lv 53 (74)
+.-.-||+ ++|.|..+++.|.+|.++
T Consensus 98 v~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 98 VIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 33345665 589999999999998887
No 125
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=33.60 E-value=20 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.3
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEE
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~ 54 (74)
...+|-++.++|..|.++|.++.-++
T Consensus 37 IqGfG~VG~~~a~~l~~~Ga~vv~vs 62 (244)
T PF00208_consen 37 IQGFGNVGSHAARFLAELGAKVVAVS 62 (244)
T ss_dssp EEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 45689999999999999998887664
No 126
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.36 E-value=70 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=22.9
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
.+..|+.+.-.|+.+++.|.+|.++.+-
T Consensus 17 VIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 17 VVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred EECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3445668889999999999999998774
No 127
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=33.14 E-value=52 Score=22.07 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.+|.++-
T Consensus 19 a~nLA~~la~~G~~VlliD 37 (231)
T PRK13849 19 LMGLCAALASDGKRVALFE 37 (231)
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 6899999999999987763
No 128
>PRK04148 hypothetical protein; Provisional
Probab=32.95 E-value=59 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.5
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv 53 (74)
..+..| .+.++|..|+++|.++.-+
T Consensus 21 leIG~G-fG~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 21 VELGIG-FYFKVAKKLKESGFDVIVI 45 (134)
T ss_pred EEEEec-CCHHHHHHHHHCCCEEEEE
Confidence 456677 8888999999999866543
No 129
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.78 E-value=66 Score=18.38 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=35.9
Q ss_pred eeEEecCChHHHHHH--HHHHcCCCcEEEEEecCChhcccHHhcCccc
Q 035064 27 KANYVLGGVARNVAE--CMSKLGAKPYMISALGLDMEIYCWNTGNLLA 72 (74)
Q Consensus 27 ~~~~~~GG~a~N~A~--~larLG~~~~lv~~vG~D~~G~~~~~~~~~~ 72 (74)
.+-....-...|..+ .+.++.....++..+-++..-+.+++.|++.
T Consensus 65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 65 AVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADH 112 (116)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SE
T ss_pred EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCE
Confidence 455666778888655 5666788999999999999999999998854
No 130
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=32.56 E-value=38 Score=20.69 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHcCCCcEEEEEecCCh-hcccHHhcC
Q 035064 34 GVARNVAECMSKLGAKPYMISALGLDM-EIYCWNTGN 69 (74)
Q Consensus 34 G~a~N~A~~larLG~~~~lv~~vG~D~-~G~~~~~~~ 69 (74)
|++-|+|...-.-|..+..|--+|.|. .|+..++++
T Consensus 10 GKGq~Va~GveaAGG~aivipG~~ADmklGdvM~~e~ 46 (115)
T PF14272_consen 10 GKGQKVAKGVEAAGGKAIVIPGVGADMKLGDVMKKEN 46 (115)
T ss_pred cCcchHhhHHHhcCCeEEEecCccccchHHHHHHhhC
Confidence 677899999999999999999999886 677665543
No 131
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.52 E-value=54 Score=23.39 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=23.0
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-+..||.|..+|..|+|.|.. -+.-|-.|.
T Consensus 28 lIiG~GglGs~va~~La~aGvg--~i~lvD~D~ 58 (338)
T PRK12475 28 LIVGAGALGAANAEALVRAGIG--KLTIADRDY 58 (338)
T ss_pred EEECCCHHHHHHHHHHHHcCCC--EEEEEcCCc
Confidence 4566999999999999999973 344444553
No 132
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=32.31 E-value=51 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=22.0
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEEE
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv~ 54 (74)
.+.-.=||+ +.|.|..|++.|.+|.+|=
T Consensus 110 ai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 110 GVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 455556885 5899999999999998874
No 133
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.05 E-value=59 Score=19.49 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHcCCCcEEEEE
Q 035064 35 VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~ 55 (74)
.+.|.|..+++-|.+|.++-.
T Consensus 17 ~a~~lA~~la~~~~~Vllid~ 37 (157)
T PF13614_consen 17 LALNLAAALARKGKKVLLIDF 37 (157)
T ss_dssp HHHHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHHHHhcCCCeEEEEC
Confidence 368999999999999666543
No 134
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=31.75 E-value=58 Score=23.62 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCc
Q 035064 35 VARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNL 70 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~ 70 (74)
.+.-.|++++|.|.+|.|+=+-+ ..|-.....++
T Consensus 10 aG~~AAi~AAr~G~~VlLiE~~~--~lGG~~t~~~~ 43 (428)
T PF12831_consen 10 AGVAAAIAAARAGAKVLLIEKGG--FLGGMATSGGV 43 (428)
T ss_dssp HHHHHHHHHHHTTS-EEEE-SSS--SSTGGGGGSSS
T ss_pred HHHHHHHHHHHCCCEEEEEECCc--cCCCcceECCc
Confidence 45677899999999999997433 34544444443
No 135
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=31.49 E-value=57 Score=19.12 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 36 ARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
..|.+..|++.|+++.+++.-..|....
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~~~~~ 45 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKDPIEE 45 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TTS-SS
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCccchh
Confidence 4688999999999999998777665443
No 136
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=30.92 E-value=88 Score=21.57 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=20.8
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| .++-+|..|++.|.++.++-+
T Consensus 8 IIGgGi~G~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 8 VIGLGSMGSAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 34444 789999999999999988864
No 137
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.87 E-value=63 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
-+.-|| .+.+.|..++++|.++.++=+
T Consensus 8 vVIG~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 8 VIIGGGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 344445 588999999999999999975
No 138
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=30.63 E-value=59 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.3
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
.-...||.+..+|..|+|.|..
T Consensus 32 ~ViG~GglGs~ia~~La~~Gvg 53 (212)
T PRK08644 32 GIAGAGGLGSNIAVALARSGVG 53 (212)
T ss_pred EEECcCHHHHHHHHHHHHcCCC
Confidence 4566899999999999999985
No 139
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.36 E-value=93 Score=21.49 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHcCCCcEEEEE
Q 035064 33 GGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 33 GG~a~N~A~~larLG~~~~lv~~ 55 (74)
|=.++.+|+.|++-|.+|.++-+
T Consensus 9 Gi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 9 GIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred CHHHHHHHHHHHHCCCeEEEEec
Confidence 33789999999999999988865
No 140
>PTZ00058 glutathione reductase; Provisional
Probab=30.35 E-value=80 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=22.4
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-+.-|| .|.+.|..++++|.+|.+|=+
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk 79 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEK 79 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence 34444445 588999999999999999974
No 141
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=30.12 E-value=81 Score=18.83 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=17.0
Q ss_pred ecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 31 VLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 31 ~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
-.||+..|+|..+.+-..++.+++-
T Consensus 67 l~GGSp~n~a~~~~~~~~~~~vIsG 91 (116)
T TIGR00824 67 IFGGSPYNAAARIIVDKPHMDVIAG 91 (116)
T ss_pred CCCCCHHHHHHHHHhhcCCEEEEEe
Confidence 3899999999866533345555553
No 142
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=30.08 E-value=56 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.9
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
-+.+|-++..+|..|.++|.++..++-
T Consensus 28 IqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 28 VQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 456999999999999999987777763
No 143
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.54 E-value=62 Score=20.90 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.4
Q ss_pred HHHHHHHHHH-cCCCcEEEE
Q 035064 36 ARNVAECMSK-LGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~lar-LG~~~~lv~ 54 (74)
+.|.|.++++ .|.+|.+|-
T Consensus 53 a~nLA~~la~~~g~~VLlvD 72 (207)
T TIGR03018 53 AINLAISLAQEYDKTVLLID 72 (207)
T ss_pred HHHHHHHHHHhcCCeEEEEE
Confidence 5789999997 599988873
No 144
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.47 E-value=81 Score=24.08 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=23.0
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEec
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG 57 (74)
.+..|+.+.-.|+.+++.|.+|.++.+-.
T Consensus 8 VVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 8 VVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 34466677789999999999999998643
No 145
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.43 E-value=84 Score=23.84 Aligned_cols=29 Identities=21% Similarity=-0.036 Sum_probs=23.9
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEec
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG 57 (74)
.+..|+.+.-.|+.+++.|.+|.++.+-.
T Consensus 10 VVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 10 VIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred EECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 45567778889999999999999998753
No 146
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=29.09 E-value=56 Score=22.46 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.3
Q ss_pred eEEecCChHHHHHHHHHHcCC
Q 035064 28 ANYVLGGVARNVAECMSKLGA 48 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~ 48 (74)
.-+..||.|..++.+|+|+|.
T Consensus 15 ~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 15 VLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred EEEcCChHHHHHHHHHHHccc
Confidence 456799999999999999863
No 147
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=28.86 E-value=71 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 32 LGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 32 ~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
.|-.+.-.|.+++|+|.+|.++..=
T Consensus 12 GGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 12 GGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred chHHHHHHHHHHHHcCCcEEEEecc
Confidence 3445566788899999999999753
No 148
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.84 E-value=57 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEE
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~ 54 (74)
..+.||.|.-+|..+++.|.++.+++
T Consensus 21 N~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 21 NHSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CCcccHHHHHHHHHHHHCCCEEEEEc
Confidence 45589999999999999999999986
No 149
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.77 E-value=98 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=21.9
Q ss_pred eEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+-+.-|| .+...|..++++|.+|.++-+
T Consensus 7 vvIIG~GpaG~~AA~~aa~~G~~V~lie~ 35 (466)
T PRK07818 7 VVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 (466)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3344455 478999999999999999964
No 150
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=28.68 E-value=72 Score=21.80 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=23.6
Q ss_pred eEEecCChHHHHHHHHHHcC-CCcEEEEEe
Q 035064 28 ANYVLGGVARNVAECMSKLG-AKPYMISAL 56 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG-~~~~lv~~v 56 (74)
.-+..||.+.-++.+|+.+| .++.++++-
T Consensus 127 lVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 127 LILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred EEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45668999999999999999 677777664
No 151
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=28.42 E-value=68 Score=22.10 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHcCCCcEEEEE
Q 035064 35 VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~ 55 (74)
.+++.|..+++.|.+|.+++.
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~ 21 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVST 21 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEEC
Confidence 378999999999999999886
No 152
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.39 E-value=76 Score=16.69 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
+.|.|..+++.|.++.++.
T Consensus 16 ~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 16 AANLAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHHHHCCCeEEEEC
Confidence 5788999999999988765
No 153
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.20 E-value=61 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.7
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEEec
Q 035064 30 YVLGGVARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~~lv~~vG 57 (74)
+..|..+.=.|..|++-|.++.++++-.
T Consensus 4 ~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp ESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred ECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 4578888899999999999999998765
No 154
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=28.14 E-value=55 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred eEEecCChHHHHHHHHHHcCCC-cEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAK-PYMIS 54 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~-~~lv~ 54 (74)
.-...||.|+-+|.+|+++|.+ +.++.
T Consensus 131 lIlGaGGaaraia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 131 VQLGAGGAGAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 4567999999999999999984 44443
No 155
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=28.08 E-value=76 Score=20.72 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
++|.|..+++.|.++.++..
T Consensus 16 ~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 16 AAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred HHHHHHHHHHCCCcEEEEEC
Confidence 68999999999999999874
No 156
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=27.68 E-value=75 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.9
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
.+..|..+...|+.+++.|.+|.++-+-
T Consensus 9 VVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 9 VIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456667889999999999999998763
No 157
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=27.65 E-value=81 Score=23.38 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHcCCCcEEEEE
Q 035064 33 GGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 33 GG~a~N~A~~larLG~~~~lv~~ 55 (74)
|-.+...|..++++|.++.+|-+
T Consensus 11 G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 11 GSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CHHHHHHHHHHHHCCCeEEEEec
Confidence 33578999999999999999985
No 158
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=27.59 E-value=71 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.1
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-...||.+..+|.+|++.|.. -+.-+-+|.
T Consensus 36 liiG~GglGs~va~~La~~Gvg--~i~lvD~D~ 66 (245)
T PRK05690 36 LVVGLGGLGCAASQYLAAAGVG--TLTLVDFDT 66 (245)
T ss_pred EEECCCHHHHHHHHHHHHcCCC--EEEEEcCCE
Confidence 4456899999999999999974 344454443
No 159
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=27.44 E-value=90 Score=21.60 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.9
Q ss_pred eEEecCChHHHHHHHHHHcCCC-cEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAK-PYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~-~~lv~~ 55 (74)
.-...||.|+=++.+|+++|.+ +.++.+
T Consensus 126 lilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 126 ALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred EEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4567999999999999999986 555554
No 160
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=27.34 E-value=68 Score=23.34 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=21.9
Q ss_pred eeEEecCCh-----HHHHHHHHHHcCCCcEEEE
Q 035064 27 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~larLG~~~~lv~ 54 (74)
.+.-.=||+ +.|.|..|++.|.+|.+|=
T Consensus 110 av~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 110 AVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 444556884 6899999999999988775
No 161
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=27.28 E-value=94 Score=23.96 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=29.8
Q ss_pred eeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcccHHhcCc
Q 035064 27 KANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIYCWNTGNL 70 (74)
Q Consensus 27 ~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~~~~~~~~ 70 (74)
-+.+..|+.+.-.|+.++..|.+|.++.+-....-...+-+.|+
T Consensus 32 VlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi 75 (617)
T PTZ00139 32 AVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGI 75 (617)
T ss_pred EEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCe
Confidence 34556777788899999999999999988543222224444444
No 162
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=27.20 E-value=1.2e+02 Score=21.02 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.0
Q ss_pred ecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 31 VLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 31 ~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
.-|| .++.+|..|++.|.++.++-+
T Consensus 6 IG~Gi~G~s~A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 6 VGAGILGLAHAYAAARRGLSVTVIER 31 (365)
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 3444 688999999999999888755
No 163
>PRK06116 glutathione reductase; Validated
Probab=26.99 E-value=81 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=22.1
Q ss_pred eEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+-+.-|| .+...|..++++|.+|.++=+
T Consensus 7 vvVIG~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 7 LIVIGGGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3344555 478999999999999999964
No 164
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=26.93 E-value=91 Score=17.86 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 36 ARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
..+.|..|++.|+++.+++.-.++.
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GG
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCc
Confidence 3578899999999999998654443
No 165
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.90 E-value=1.8e+02 Score=18.77 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=34.0
Q ss_pred CCCCCCcceec-eeEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 16 IPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
+...+++.... .-.+..||.+.-....+.++|.++.-++.+..-
T Consensus 111 ~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~ 155 (179)
T COG0503 111 DALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIEL 155 (179)
T ss_pred hhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEc
Confidence 33445555443 667889999999999999999999999988863
No 166
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=26.68 E-value=93 Score=21.81 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=23.1
Q ss_pred cCChH---HHHHHHHHHcCCCcEEEEEecCChhc
Q 035064 32 LGGVA---RNVAECMSKLGAKPYMISALGLDMEI 62 (74)
Q Consensus 32 ~GG~a---~N~A~~larLG~~~~lv~~vG~D~~G 62 (74)
.||.. .+.|..+++.|+++.+++.-.++..+
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~ 46 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG 46 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC
Confidence 57765 67899999999999999864333333
No 167
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=26.54 E-value=91 Score=22.60 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=23.5
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-+..||.|..+|.+|++.|... +.-+-+|.
T Consensus 46 lviG~GGlGs~va~~La~~Gvg~--i~lvD~D~ 76 (392)
T PRK07878 46 LVIGAGGLGSPTLLYLAAAGVGT--LGIVEFDV 76 (392)
T ss_pred EEECCCHHHHHHHHHHHHcCCCe--EEEECCCE
Confidence 45679999999999999999853 44454443
No 168
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=26.22 E-value=72 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.5
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEEec
Q 035064 32 LGGVARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 32 ~GG~a~N~A~~larLG~~~~lv~~vG 57 (74)
.-|-+..+|..++++|.++.+.++--
T Consensus 17 s~GIG~aia~~la~~Ga~v~i~~r~~ 42 (270)
T KOG0725|consen 17 SSGIGKAIALLLAKAGAKVVITGRSE 42 (270)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34667899999999999999988753
No 169
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=26.20 E-value=1.5e+02 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.5
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
++.+.-|| .+...|..|++.|.++.++-+
T Consensus 142 ~VvIIGgGpaGl~aA~~l~~~g~~V~lie~ 171 (457)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171 (457)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 55566666 467889999999999988753
No 170
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.20 E-value=98 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=23.8
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEecC
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALGL 58 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG~ 58 (74)
.+..|+.+.-.|+.++..|.+|.++.+-..
T Consensus 12 VVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 12 VIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred EECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 345666777889999999999999998643
No 171
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=26.18 E-value=91 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=22.4
Q ss_pred EecCChHHHHHHHHHHcC-CCcEEEEEe
Q 035064 30 YVLGGVARNVAECMSKLG-AKPYMISAL 56 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG-~~~~lv~~v 56 (74)
+..|..+...|+.+++.| .+|.++-+-
T Consensus 5 VG~G~AGl~AA~~aa~~G~~~V~vlEk~ 32 (439)
T TIGR01813 5 VGSGFAGLSAALSAKKAGAANVVLLEKM 32 (439)
T ss_pred ECCCHHHHHHHHHHHHcCCccEEEEecC
Confidence 446778889999999999 999988764
No 172
>PRK06370 mercuric reductase; Validated
Probab=26.11 E-value=1.1e+02 Score=22.14 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=21.8
Q ss_pred eEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+-+.-|| .+...|..++++|.+|.++-+
T Consensus 8 vvVIG~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 8 AIVIGAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3344555 478899999999999999964
No 173
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=25.96 E-value=1.3e+02 Score=16.66 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=16.1
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
+.+..|-.+.-.|..|.++|..
T Consensus 59 ~~c~~g~~s~~~~~~L~~~g~~ 80 (99)
T cd01527 59 FHCRSGMRTQQNAERLAAISAG 80 (99)
T ss_pred EEeCCCchHHHHHHHHHHcCCc
Confidence 3344555688889999999985
No 174
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=25.71 E-value=92 Score=22.46 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.1
Q ss_pred ecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 31 VLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 31 ~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
.-|| .+.+.|..+++.|.++.++-+
T Consensus 7 IG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 7 IGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3444 588999999999999999986
No 175
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.71 E-value=83 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCcEEEEEecCChh
Q 035064 38 NVAECMSKLGAKPYMISALGLDME 61 (74)
Q Consensus 38 N~A~~larLG~~~~lv~~vG~D~~ 61 (74)
=.|--|..+|.++..+..||||..
T Consensus 25 ~la~~L~~~G~~v~~~~~VgD~~~ 48 (255)
T COG1058 25 FLADELTELGVDLARITTVGDNPD 48 (255)
T ss_pred HHHHHHHhcCceEEEEEecCCCHH
Confidence 356677888999999999999863
No 176
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=25.39 E-value=68 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEE
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~ 54 (74)
..+.|..|..+|..+.+.|.++.++.
T Consensus 22 N~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 22 NHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred CccchHHHHHHHHHHHhCCCEEEEEE
Confidence 45688899999999999999999886
No 177
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=25.30 E-value=99 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.0
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| .+...|..++++|.+|.++-+
T Consensus 7 VIG~GpaG~~aA~~aa~~G~~V~lie~ 33 (446)
T TIGR01424 7 VIGAGSGGVRAARLAANHGAKVAIAEE 33 (446)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 33445 578999999999999999965
No 178
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.19 E-value=1e+02 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=24.2
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 30 YVLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
...|+.+.=.|..|++-|.+|.++.+-
T Consensus 8 iGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 8 LGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 558999999999999999999999884
No 179
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=25.13 E-value=1.2e+02 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=23.3
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEEec
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~vG 57 (74)
.+..|+.+.-.|+.+++.|.+|.++.+-.
T Consensus 55 VIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 55 VVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred EECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 44456677789999999999999998853
No 180
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=24.92 E-value=1e+02 Score=21.32 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=24.3
Q ss_pred EEecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
-+..|..+.=.|..|++.|+++.++++
T Consensus 10 IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 10 IIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 356899999999999999999999987
No 181
>PRK08223 hypothetical protein; Validated
Probab=24.56 E-value=1.1e+02 Score=21.71 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCCh
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~ 60 (74)
.-...||.+..+|..|+|.|... +.-+-+|.
T Consensus 31 lIvG~GGLGs~va~~LA~aGVG~--i~lvD~D~ 61 (287)
T PRK08223 31 AIAGLGGVGGIHLLTLARLGIGK--FTIADFDV 61 (287)
T ss_pred EEECCCHHHHHHHHHHHHhCCCe--EEEEeCCC
Confidence 45669999999999999999853 44454553
No 182
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.25 E-value=60 Score=19.86 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHcCCCcEEEEEecCCh-hcccHHhcC
Q 035064 34 GVARNVAECMSKLGAKPYMISALGLDM-EIYCWNTGN 69 (74)
Q Consensus 34 G~a~N~A~~larLG~~~~lv~~vG~D~-~G~~~~~~~ 69 (74)
|++-|+|...-.-|.++..|.-++.|. .|+..++++
T Consensus 10 GkGq~Va~Gve~AGg~aiVipG~~ADmklGdVM~~e~ 46 (115)
T TIGR03577 10 GKGQKVAKGVEAAGGRAVVIPGMAADMKLGDVMKQEN 46 (115)
T ss_pred cCcchhhhhHHhcCCeEEEecCccccchHHHHHhhhc
Confidence 567788888889999988888888776 677555543
No 183
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.23 E-value=90 Score=22.34 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=23.1
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
.-...||.+..+|.+|++.|..- +.-+-+|
T Consensus 32 livG~GGlGs~~a~~La~~Gvg~--i~lvD~D 61 (355)
T PRK05597 32 AVIGAGGLGSPALLYLAGAGVGH--ITIIDDD 61 (355)
T ss_pred EEECCCHHHHHHHHHHHHcCCCe--EEEEeCC
Confidence 45679999999999999999864 4444444
No 184
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=23.39 E-value=1e+02 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=21.4
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
+.+..|=.+.-.|.+.+|+|.++.|++.
T Consensus 32 vVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 32 VVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred EEECCCccchHHHHHHHhcCCceEEeec
Confidence 3344444667788999999999999875
No 185
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=23.38 E-value=1.2e+02 Score=17.93 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 32 LGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 32 ~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
+||+..|++..+.....++..++-+
T Consensus 67 ~GGSp~n~~~~~~~~~~~~~visG~ 91 (122)
T cd00006 67 FGGSPNNAAARLSMEHPPVEVIAGV 91 (122)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEcc
Confidence 6999999998887655666666543
No 186
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=23.26 E-value=84 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
++|.|.+|++.|.++.++
T Consensus 65 t~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 65 TVNLALALASEGKKVGLL 82 (300)
T ss_pred HHHHHHHHhcCCCcEEEE
Confidence 589999999988887665
No 187
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.25 E-value=1.1e+02 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=21.5
Q ss_pred EEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
-+.-|| .+...|..++++|.+|.++-+
T Consensus 8 vVIG~GpaG~~aA~~aa~~G~~V~lie~ 35 (471)
T PRK06467 8 VVLGAGPAGYSAAFRAADLGLETVCVER 35 (471)
T ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 344455 578899999999999999975
No 188
>PRK14851 hypothetical protein; Provisional
Probab=23.07 E-value=89 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.1
Q ss_pred eEEecCChHHHHHHHHHHcCCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAK 49 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~ 49 (74)
.-...||.|.++|.+|+|.|..
T Consensus 47 lIvG~GGlGs~va~~Lar~GVG 68 (679)
T PRK14851 47 AIPGMGGVGGVHLITMVRTGIG 68 (679)
T ss_pred EEECcCHHHHHHHHHHHHhCCC
Confidence 3456899999999999999994
No 189
>PTZ00052 thioredoxin reductase; Provisional
Probab=22.94 E-value=1.1e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=21.9
Q ss_pred EEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 29 NYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 29 ~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
-+.-|| .+...|..++++|.+|.+|-.
T Consensus 9 iVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 9 VVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 344455 588999999999999999984
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.91 E-value=1.5e+02 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.4
Q ss_pred eeEEecCCh-HHHHHHHHHHcCCCcEEEE
Q 035064 27 KANYVLGGV-ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 27 ~~~~~~GG~-a~N~A~~larLG~~~~lv~ 54 (74)
+.-+.-||. |.-.|..++|+|.++.++.
T Consensus 214 dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 555666664 6788999999999999983
No 191
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=22.75 E-value=1.3e+02 Score=22.52 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=21.4
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 30 YVLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
+..|+.+.-.|+.+++.|.+|.++.+-
T Consensus 5 VG~G~AGl~AA~~aae~G~~V~lleK~ 31 (566)
T TIGR01812 5 VGAGLAGLRAAVEAAKAGLNTAVISKV 31 (566)
T ss_pred ECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 345666777889999999999999764
No 192
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=22.53 E-value=1.1e+02 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=22.9
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
+.+..|+.+...|+.+++.|.+|.++-+
T Consensus 65 vVVG~G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 65 VIVGAGGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred EEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3455677788899999999999999875
No 193
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.50 E-value=1.7e+02 Score=19.74 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCcEEEEE
Q 035064 38 NVAECMSKLGAKPYMISA 55 (74)
Q Consensus 38 N~A~~larLG~~~~lv~~ 55 (74)
+.|..|.+.|+++.+++.
T Consensus 19 ~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 19 AVAEELIKRGVEVLWLGT 36 (348)
T ss_pred HHHHHHHhCCCEEEEEeC
Confidence 668889999999999864
No 194
>PRK07804 L-aspartate oxidase; Provisional
Probab=22.47 E-value=1.4e+02 Score=22.49 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.3
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGL 58 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~ 58 (74)
+.+..|+.+.-.|+.+++.|.+|.++.+-..
T Consensus 20 lVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 20 VVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred EEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 3444566788899999999999999987543
No 195
>PRK07236 hypothetical protein; Provisional
Probab=22.36 E-value=1.7e+02 Score=20.48 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=22.6
Q ss_pred eeEEecCCh-HHHHHHHHHHcCCCcEEEEEe
Q 035064 27 KANYVLGGV-ARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 27 ~~~~~~GG~-a~N~A~~larLG~~~~lv~~v 56 (74)
++-+.-||. +.-.|..|++.|.++.++=+-
T Consensus 8 ~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 455666666 456799999999999888754
No 196
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=22.35 E-value=1.3e+02 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=21.9
Q ss_pred eEEecCChHHHHHHHHHHcCCC-cEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAK-PYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~-~~lv~~ 55 (74)
.-...||.|.=+|.+++++|.+ +.++.+
T Consensus 130 lI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 130 TVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred EEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3455788888888889999987 777655
No 197
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.26 E-value=2.2e+02 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=22.8
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
++.+.-|| .+...|..|++.|.++.++-+
T Consensus 135 ~V~IIG~G~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 135 KVAVIGAGPAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 55566666 456889999999999999875
No 198
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=22.23 E-value=40 Score=22.51 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 035064 36 ARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv 53 (74)
+.|.|..|++.| +|.++
T Consensus 19 a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 19 VSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred HHHHhcccCCCC-EEEEE
Confidence 589999999999 87776
No 199
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=22.22 E-value=1.2e+02 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHcCCCcEEEEE
Q 035064 35 VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 35 ~a~N~A~~larLG~~~~lv~~ 55 (74)
.+.+.|..++++|.++.++-+
T Consensus 11 aG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 11 AAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred HHHHHHHHHHHCCCeEEEEeC
Confidence 578999999999999999874
No 200
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.85 E-value=1.2e+02 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.7
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| .+...|..++++|.+|.++=+
T Consensus 7 VIG~GpaG~~aA~~aa~~G~~V~liE~ 33 (450)
T TIGR01421 7 VIGGGSGGIASARRAAEHGAKALLVEA 33 (450)
T ss_pred EECcCHHHHHHHHHHHHCCCcEEEecc
Confidence 33444 578899999999999999964
No 201
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=21.63 E-value=1.4e+02 Score=17.05 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=20.1
Q ss_pred cCCCcEEEEEecCChhcccHHhcCcccc
Q 035064 46 LGAKPYMISALGLDMEIYCWNTGNLLAY 73 (74)
Q Consensus 46 LG~~~~lv~~vG~D~~G~~~~~~~~~~~ 73 (74)
-+.++.+++.+|.-+. +.+++.|++-|
T Consensus 60 ~~~~vvi~~~iG~~a~-~~L~~~GI~v~ 86 (102)
T cd00853 60 EDCAILYCAAIGGPAA-ARLVRAGIHPI 86 (102)
T ss_pred CCCcEEEEhhcChhHH-HHHHHcCCEEE
Confidence 4899999999995543 35788887654
No 202
>PRK07139 amidase; Provisional
Probab=21.58 E-value=77 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=39.0
Q ss_pred CEEcceeceeEeecCC--CCCCC-cceeceeEEecCChHHHHHHHHHHcCCCcEEEEEecCChhcc
Q 035064 1 MIIGGMVLDIHATPSI--PANPR-TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMEIY 63 (74)
Q Consensus 1 ~vvG~~~~D~~~~~~~--~~~~~-~~~~~~~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D~~G~ 63 (74)
+++|-.+++-...... .+..+ +.+|-.....+||+..--|.+++. |.. -.+|.|.-|.
T Consensus 83 IilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAa-g~~----~alGtDtgGS 143 (439)
T PRK07139 83 KPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNK-NIS----FAIGSDTGDS 143 (439)
T ss_pred EEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHC-CCC----EEEEcCCCcc
Confidence 4677777777775542 22234 456666677899988888877774 542 4788888776
No 203
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.57 E-value=1.4e+02 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.1
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMI 53 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv 53 (74)
.-...||.|+=++.+|+++|.+...|
T Consensus 131 lilGaGGaarAi~~aL~~~g~~~i~i 156 (283)
T PRK14027 131 VQVGAGGVGNAVAYALVTHGVQKLQV 156 (283)
T ss_pred EEECCcHHHHHHHHHHHHCCCCEEEE
Confidence 45679999999999999999864333
No 204
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.33 E-value=92 Score=24.34 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCcEEEEE
Q 035064 36 ARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~ 55 (74)
+.|.|..+++.|.+|.+|-.
T Consensus 564 a~nLA~~lA~~g~rvLlID~ 583 (754)
T TIGR01005 564 EANAAALIASGGKRALLIDA 583 (754)
T ss_pred HHHHHHHHHhCCCeEEEEeC
Confidence 78999999999999988843
No 205
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.12 E-value=2.2e+02 Score=22.41 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=23.3
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
++.+.-|| .+...|..|+|.|.++.++-+
T Consensus 433 ~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~ 462 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEA 462 (752)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 55666666 567899999999999999876
No 206
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=21.09 E-value=1.3e+02 Score=16.69 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q 035064 36 ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~ 54 (74)
++|.|..+++.|.++.++-
T Consensus 17 ~~~la~~~~~~~~~vl~~d 35 (104)
T cd02042 17 AVNLAAALARRGKRVLLID 35 (104)
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 6789999999888887764
No 207
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=21.05 E-value=2.8e+02 Score=20.83 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.0
Q ss_pred eeceeEEecCC-hHHHHHHHHHHcCCCcEEEEEec
Q 035064 24 TLGKANYVLGG-VARNVAECMSKLGAKPYMISALG 57 (74)
Q Consensus 24 ~~~~~~~~~GG-~a~N~A~~larLG~~~~lv~~vG 57 (74)
.|.++-+.-|| .+.=.|-.+++||.+|.++-+-.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 34445555444 46778999999999999998765
No 208
>PRK07411 hypothetical protein; Validated
Probab=20.92 E-value=1.2e+02 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=23.1
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
.-+..||.|..+|.+|++.|.. -+.-+-+|
T Consensus 42 livG~GGlG~~va~~La~~Gvg--~l~lvD~D 71 (390)
T PRK07411 42 LCIGTGGLGSPLLLYLAAAGIG--RIGIVDFD 71 (390)
T ss_pred EEECCCHHHHHHHHHHHHcCCC--EEEEECCC
Confidence 4567999999999999999985 34444444
No 209
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.77 E-value=1.2e+02 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=22.7
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
..+..|+.+...|+.+++.|.++.++=+
T Consensus 11 vVvG~G~aG~~aA~~aa~~G~~v~llEk 38 (557)
T PRK07843 11 VVVGSGAAGMVAALTAAHRGLSTVVVEK 38 (557)
T ss_pred EEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence 3445677788999999999999999855
No 210
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=20.76 E-value=1.4e+02 Score=19.16 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCChh
Q 035064 36 ARNVAECMSKLGAKPYMISALGLDME 61 (74)
Q Consensus 36 a~N~A~~larLG~~~~lv~~vG~D~~ 61 (74)
+.-.+-.+.++|.++..+..++||..
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~ 46 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDED 46 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHH
Confidence 34567778899999999999999875
No 211
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.76 E-value=2.7e+02 Score=20.41 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=22.3
Q ss_pred eeEEecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 27 ~~~~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
++-+.-+| .+...|..|++.|.++.++-+
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~ 174 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFER 174 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEec
Confidence 45555555 567888999999999998864
No 212
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=20.65 E-value=1.6e+02 Score=19.21 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=19.8
Q ss_pred eEEecCChHHHHHHHHHHcCCCc
Q 035064 28 ANYVLGGVARNVAECMSKLGAKP 50 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~ 50 (74)
.-...||.+..+|.+|++.|..-
T Consensus 23 lviG~gglGsevak~L~~~GVg~ 45 (198)
T cd01485 23 LIIGAGALGAEIAKNLVLAGIDS 45 (198)
T ss_pred EEECCCHHHHHHHHHHHHcCCCE
Confidence 34579999999999999999963
No 213
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=20.61 E-value=1.2e+02 Score=21.80 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=20.9
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| .+...|..+++.|.++.++-+
T Consensus 8 IIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 8 VIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444 478899999999999999976
No 214
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.61 E-value=1.4e+02 Score=22.60 Aligned_cols=29 Identities=10% Similarity=-0.094 Sum_probs=22.8
Q ss_pred EEecCChHHHHHHHHHHcC---CCcEEEEEec
Q 035064 29 NYVLGGVARNVAECMSKLG---AKPYMISALG 57 (74)
Q Consensus 29 ~~~~GG~a~N~A~~larLG---~~~~lv~~vG 57 (74)
.+..|+.+.-.|+.+++.| .+|.++.+-.
T Consensus 10 VVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 10 IVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred EECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 3456667788999999998 8999988654
No 215
>PRK07121 hypothetical protein; Validated
Probab=20.58 E-value=1.9e+02 Score=21.27 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.7
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEe
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISAL 56 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~v 56 (74)
+.+..|+.+.-.|+.+++.|.+|.++-+-
T Consensus 24 vVVGaG~AGl~AA~~aae~G~~VillEK~ 52 (492)
T PRK07121 24 VVVGFGAAGACAAIEAAAAGARVLVLERA 52 (492)
T ss_pred EEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34446667778999999999999998763
No 216
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.36 E-value=1.6e+02 Score=19.78 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=22.4
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
+..|..|.-.|..|++-|.++.++.+
T Consensus 6 iG~G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 6 LGAGAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 45678888999999999999999886
No 217
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.29 E-value=1.3e+02 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.0
Q ss_pred EecCC-hHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGG-VARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG-~a~N~A~~larLG~~~~lv~~ 55 (74)
+.-|| .+...|..+++.|.+|.++-.
T Consensus 8 VIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 8 IIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 34445 588999999999999999974
No 218
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.28 E-value=1.1e+02 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.4
Q ss_pred EecCChHHHHHHHHHHcCCCcEEEEE
Q 035064 30 YVLGGVARNVAECMSKLGAKPYMISA 55 (74)
Q Consensus 30 ~~~GG~a~N~A~~larLG~~~~lv~~ 55 (74)
+..|=.+.-.|.+.||+|.++.|++.
T Consensus 10 IGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 10 IGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred ECCCccchHHHHhhhccCCeEEEEEc
Confidence 33444667889999999999999864
No 219
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.12 E-value=1.4e+02 Score=21.31 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=22.4
Q ss_pred eEEecCChHHHHHHHHHHcCCCcEEEEEecCC
Q 035064 28 ANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (74)
Q Consensus 28 ~~~~~GG~a~N~A~~larLG~~~~lv~~vG~D 59 (74)
.-...||.+..+|.+|+|.|..- +.-+-+|
T Consensus 139 lvvG~GG~Gs~ia~~La~~Gvg~--i~lvD~d 168 (376)
T PRK08762 139 LLIGAGGLGSPAALYLAAAGVGT--LGIVDHD 168 (376)
T ss_pred EEECCCHHHHHHHHHHHHcCCCe--EEEEeCC
Confidence 34568999999999999999853 3334444
No 220
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=20.03 E-value=1.2e+02 Score=22.49 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=15.9
Q ss_pred cCCh-HHHHHHHHHHcCCCcEEEE
Q 035064 32 LGGV-ARNVAECMSKLGAKPYMIS 54 (74)
Q Consensus 32 ~GG~-a~N~A~~larLG~~~~lv~ 54 (74)
-||- +.=.|.++||+|.+|.|+.
T Consensus 6 GgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 6 GGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp SSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEe
Confidence 3443 4557889999999999994
Done!