Query 035076
Match_columns 74
No_of_seqs 100 out of 103
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.4 3.5E-13 7.7E-18 102.7 2.8 55 1-61 189-245 (331)
2 TIGR03467 HpnE squalene-associ 66.8 13 0.00029 26.9 4.5 48 2-56 278-327 (419)
3 PF10686 DUF2493: Protein of u 48.0 8.9 0.00019 23.2 0.8 16 55-70 51-66 (71)
4 PF14370 Topo_C_assoc: C-termi 25.1 31 0.00067 21.5 0.5 15 53-67 36-50 (71)
5 PF09951 DUF2185: Protein of u 21.7 1.3E+02 0.0027 19.1 2.8 26 25-55 12-37 (89)
6 TIGR00562 proto_IX_ox protopor 21.6 1.7E+02 0.0037 21.9 4.0 51 2-57 305-364 (462)
7 PF15539 CAF1-p150_C2: CAF1 co 21.4 45 0.00097 25.9 0.8 34 26-68 137-170 (292)
8 KOG4803 Uncharacterized conser 18.2 1.2E+02 0.0027 25.7 2.7 20 25-50 139-158 (610)
9 COG5128 Transport protein part 16.4 76 0.0017 23.3 1.1 15 58-72 177-191 (208)
10 PF11443 DUF2828: Domain of un 14.8 73 0.0016 26.4 0.7 17 57-73 426-442 (534)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.35 E-value=3.5e-13 Score=102.74 Aligned_cols=55 Identities=7% Similarity=0.274 Sum_probs=49.6
Q ss_pred CeeEEeecCCcccccccccccccc--ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcC
Q 035076 1 MGVLAASEDPCLLVSAASFKAPLL--KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK 61 (74)
Q Consensus 1 ~alm~aF~~Pl~~~~~~~~~gafv--~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk 61 (74)
+++|+.|++||+.| +.|.|+ ++|.||+||.+||| +....+.||+||+++||++|=
T Consensus 189 ~s~~lg~~q~l~~P----~~G~~vdg~~laWla~d~sK~g--~~p~~~~~vvqasp~wSr~h~ 245 (331)
T COG3380 189 WSAVLGYPQPLDRP----WPGNFVDGHPLAWLARDASKKG--HVPDGEIWVVQASPDWSREHL 245 (331)
T ss_pred HHHHhcCCccCCCC----CCCcccCCCeeeeeeccccCCC--CCCcCceEEEEeCchHHHHhh
Confidence 36899999999999 999999 79999999999999 455678999999999999983
No 2
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=66.79 E-value=13 Score=26.87 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=32.1
Q ss_pred eeEEeecCCcccccccccccc-cc-ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhh
Q 035076 2 GVLAASEDPCLLVSAASFKAP-LL-KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAY 56 (74)
Q Consensus 2 alm~aF~~Pl~~~~~~~~~ga-fv-~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~w 56 (74)
.+++.|++|+..+ .+.. ++ ....|+.+++.+++ ..+..+++++...++
T Consensus 278 ~v~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 327 (419)
T TIGR03467 278 TVHLRLDRAVRLP----APMVGLVGGLAQWLFDRGQLAG---EPGYLAVVISAARDL 327 (419)
T ss_pred EEEEEeCCCcCCC----CCeeeecCCceeEEEECCcCCC---CCCEEEEEEecchhh
Confidence 4789999987432 2221 12 67899999988887 556666777765444
No 3
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=48.00 E-value=8.9 Score=23.20 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=14.4
Q ss_pred hhHhhcCCCCccCCcc
Q 035076 55 AYGKRNKVPQVFLHIN 70 (74)
Q Consensus 55 ~wS~~Hk~pqe~ip~~ 70 (74)
.|.++++|||+-.|++
T Consensus 51 ~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 51 RWARERGVPVIRFPAD 66 (71)
T ss_pred HHHHHCCCeeEEeCcC
Confidence 7999999999988875
No 4
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=25.08 E-value=31 Score=21.51 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=10.9
Q ss_pred ChhhHhhcCCCCccC
Q 035076 53 TAAYGKRNKVPQVFL 67 (74)
Q Consensus 53 t~~wS~~Hk~pqe~i 67 (74)
|-+|.+.|+||=|-|
T Consensus 36 tvAWck~~~VPieKi 50 (71)
T PF14370_consen 36 TVAWCKRHEVPIEKI 50 (71)
T ss_dssp HHHHHHHTT--GGGT
T ss_pred HHHHHHHhCCcHHHH
Confidence 458999999998876
No 5
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=21.65 E-value=1.3e+02 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred ceeeeEeeCCCCCCCCCCCCCcEEEEEeChh
Q 035076 25 KAVSWMENNSEKFFCSQSDGAHCWTLFSTAA 55 (74)
Q Consensus 25 ~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~ 55 (74)
.+|.||=|. +|. .....-|.++|.-+
T Consensus 12 ~~v~~~yRE--~p~---~~~DSGWrffsg~E 37 (89)
T PF09951_consen 12 EPVGYMYRE--EPE---FPNDSGWRFFSGDE 37 (89)
T ss_pred CceEEEEec--CCC---CCCCCceEEEecCC
Confidence 589999998 776 33444599999754
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=21.63 E-value=1.7e+02 Score=21.93 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=29.0
Q ss_pred eeEEeecCC-ccccccccccc--ccc------ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhH
Q 035076 2 GVLAASEDP-CLLVSAASFKA--PLL------KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYG 57 (74)
Q Consensus 2 alm~aF~~P-l~~~~~~~~~g--afv------~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS 57 (74)
.+++.|+++ ++.+ .++ ..+ ..+.|+..++.+|+.. .++...++++.+..++
T Consensus 305 ~v~l~~~~~~~~~~----~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 305 NVNLGFPEGSVDGE----LEGFGFLISRSSKFAILGCIFTSKLFPNRA-PPGKTLLTAYIGGATD 364 (462)
T ss_pred EEEEEEchHHcCCC----CCceEEEccCCCCCceEEEEEEccccCCcC-CCCcEEEEEEeCCCCC
Confidence 578888775 2321 122 122 3589999888888721 1233456667665443
No 7
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=21.41 E-value=45 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=21.9
Q ss_pred eeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcCCCCccCC
Q 035076 26 AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLH 68 (74)
Q Consensus 26 ~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk~pqe~ip 68 (74)
.+++-+.-..||. ..-||++|+. --+|.-||++|
T Consensus 137 ~isensvyeKrP~-----~RmCWyVh~e----vL~kF~qe~Lp 170 (292)
T PF15539_consen 137 IISENSVYEKRPK-----FRMCWYVHPE----VLKKFQQEDLP 170 (292)
T ss_pred hhhhhhhhccCCC-----CcEEEEECHH----HHhhcCcccCC
Confidence 4555555444444 3469999985 45677777776
No 8
>KOG4803 consensus Uncharacterized conserved protein [Function unknown]
Probab=18.23 E-value=1.2e+02 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=15.4
Q ss_pred ceeeeEeeCCCCCCCCCCCCCcEEEE
Q 035076 25 KAVSWMENNSEKFFCSQSDGAHCWTL 50 (74)
Q Consensus 25 ~~LsWiA~NssKPg~~rr~~~e~Wvl 50 (74)
.+|.|+-+|+|-|. +.||++
T Consensus 139 ~~l~wvrcd~Sd~e------gt~~ll 158 (610)
T KOG4803|consen 139 PPLVWVRCDSSDPE------GTCWLL 158 (610)
T ss_pred CceeEEEecCCCCC------Cceeee
Confidence 36899999999995 236765
No 9
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=16.41 E-value=76 Score=23.34 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=12.3
Q ss_pred hhcCCCCccCCccee
Q 035076 58 KRNKVPQVFLHINVC 72 (74)
Q Consensus 58 ~~Hk~pqe~ip~~~~ 72 (74)
.+|-+|||+.|.-++
T Consensus 177 tAh~~P~~~~p~Rtv 191 (208)
T COG5128 177 TAHPEPSENLPNRTV 191 (208)
T ss_pred eeccCcccCCCcceE
Confidence 478899999998665
No 10
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=14.77 E-value=73 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=14.0
Q ss_pred HhhcCCCCccCCcceec
Q 035076 57 GKRNKVPQVFLHINVCL 73 (74)
Q Consensus 57 S~~Hk~pqe~ip~~~~~ 73 (74)
+..+|+|||.+|+.+-+
T Consensus 426 Av~~~l~~e~M~k~lfV 442 (534)
T PF11443_consen 426 AVKNKLKQEDMPKRLFV 442 (534)
T ss_pred HHHcCCChHHCCceEEE
Confidence 57899999999987654
Done!