Query 035076
Match_columns 74
No_of_seqs 100 out of 103
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 98.3 4.6E-07 1.6E-11 63.5 3.9 56 2-61 195-255 (342)
2 1yvv_A Amine oxidase, flavin-c 97.8 4.7E-05 1.6E-09 52.3 5.6 53 2-61 187-242 (336)
3 2b9s_B DNA topoisomerase I-lik 30.8 16 0.00054 21.5 0.8 16 53-68 28-43 (62)
4 3nks_A Protoporphyrinogen oxid 28.2 58 0.002 23.0 3.5 55 2-60 316-377 (477)
5 3llk_A Sulfhydryl oxidase 1; d 19.2 3.9 0.00013 29.6 -4.2 27 21-50 96-125 (261)
6 3gj5_B Nuclear pore complex pr 14.9 32 0.0011 17.6 -0.1 19 20-38 11-33 (34)
7 3t58_A Sulfhydryl oxidase 1; o 13.9 6.2 0.00021 30.3 -4.4 37 21-60 353-393 (519)
8 1u8b_A ADA polyprotein; protei 8.6 3.6E+02 0.012 15.8 3.8 43 16-61 14-59 (133)
9 1ryq_A DNA-directed RNA polyme 8.4 39 0.0013 20.0 -1.3 20 19-38 38-62 (69)
10 2ebv_A Nuclear pore complex pr 7.6 1.2E+02 0.004 17.1 0.6 20 19-38 34-57 (57)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.30 E-value=4.6e-07 Score=63.54 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=42.5
Q ss_pred eeEEeecCC--cccccccccccccc---ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcC
Q 035076 2 GVLAASEDP--CLLVSAASFKAPLL---KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK 61 (74)
Q Consensus 2 alm~aF~~P--l~~~~~~~~~gafv---~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk 61 (74)
++|++|+++ ++.+ ++|.++ +.|.|++++++|||+...++..+||+|++.+|+++|.
T Consensus 195 ~v~l~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~ 255 (342)
T 3qj4_A 195 ALGLFYEAGTKIDVP----WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL 255 (342)
T ss_dssp EEEEECSSCC--CCS----CSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT
T ss_pred EEEEEECCCCccCCc----eeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh
Confidence 689999976 5556 888887 3499999999999821112346999999999998764
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=97.76 E-value=4.7e-05 Score=52.26 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=44.6
Q ss_pred eeEEeecCCcccccccccccccc--ceeeeEeeCCCCCCCCCCCCC-cEEEEEeChhhHhhcC
Q 035076 2 GVLAASEDPCLLVSAASFKAPLL--KAVSWMENNSEKFFCSQSDGA-HCWTLFSTAAYGKRNK 61 (74)
Q Consensus 2 alm~aF~~Pl~~~~~~~~~gafv--~~LsWiA~NssKPg~~rr~~~-e~WvlhAt~~wS~~Hk 61 (74)
.+++.|++|...+ +.+.|+ +++.|+.++++||+ +++. .+||++.+++|++++.
T Consensus 187 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~p~---~~~~~~~~v~~~~~~~~~~~~ 242 (336)
T 1yvv_A 187 AVALAFETPLQTP----MQGCFVQDSPLDWLARNRSKPE---RDDTLDTWILHATSQWSRQNL 242 (336)
T ss_dssp EEEEEESSCCSCC----CCEEEECSSSEEEEEEGGGSTT---CCCSSEEEEEEECHHHHHHTT
T ss_pred EEEEEecCCCCCC----CCeEEeCCCceeEEEecCcCCC---CCCCCcEEEEEeCHHHHHHHH
Confidence 5788999998766 677777 68999999999999 5554 7999999999998763
No 3
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=30.84 E-value=16 Score=21.49 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.2
Q ss_pred ChhhHhhcCCCCccCC
Q 035076 53 TAAYGKRNKVPQVFLH 68 (74)
Q Consensus 53 t~~wS~~Hk~pqe~ip 68 (74)
|-+|.+.|.||-|-|=
T Consensus 28 tvaWcKr~~VPieKif 43 (62)
T 2b9s_B 28 ICSWAKAQDVPINKIF 43 (62)
T ss_dssp HHHHHHHTTCCGGGTS
T ss_pred hhhhhhhcCCCHHHHh
Confidence 4589999999998763
No 4
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=28.18 E-value=58 Score=22.98 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=33.1
Q ss_pred eeEEeecCCcc-cccccccccccc------ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhc
Q 035076 2 GVLAASEDPCL-LVSAASFKAPLL------KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRN 60 (74)
Q Consensus 2 alm~aF~~Pl~-~~~~~~~~gafv------~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~H 60 (74)
.+++.|+++.- .. .| |..+ ..+.|+-.++..|+..+..+...++++.+.+|..++
T Consensus 316 ~v~l~~~~~~~~~~---~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~ 377 (477)
T 3nks_A 316 VVNLQYQGAHLPVQ---GF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTL 377 (477)
T ss_dssp EEEEEETTCCCSSC---SS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHH
T ss_pred EEEEEECCCCCCCC---Cc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcccccc
Confidence 47888988742 11 13 4333 257887665555762222244567788888888765
No 5
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=19.17 E-value=3.9 Score=29.62 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=19.4
Q ss_pred cccc-ceeeeEeeCCCCCCCCCCCCCcE--EEE
Q 035076 21 APLL-KAVSWMENNSEKFFCSQSDGAHC--WTL 50 (74)
Q Consensus 21 gafv-~~LsWiA~NssKPg~~rr~~~e~--Wvl 50 (74)
++++ ..+.|+++..|+|+ -.|--| |+|
T Consensus 96 ~~~~~~~~~WvgC~GS~p~---~RGy~CgLW~L 125 (261)
T 3llk_A 96 GAVLAKKVNWIGCQGSEPH---FRGFPCSLWVL 125 (261)
T ss_dssp HHHTCSSCCCSTTCCSSTT---SSSHHHHHHHH
T ss_pred cCccCCCCcccccCCCCCc---cCCcCcHHHHH
Confidence 4455 67899999999998 335333 766
No 6
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=14.94 E-value=32 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=13.6
Q ss_pred ccccc----ceeeeEeeCCCCCC
Q 035076 20 KAPLL----KAVSWMENNSEKFF 38 (74)
Q Consensus 20 ~gafv----~~LsWiA~NssKPg 38 (74)
+...| +.+.-+++++.|||
T Consensus 11 ~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 11 EVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp TTTCCEECSSCSBCTTTCCBC--
T ss_pred CeeEeECccccCEEcccCCcCCC
Confidence 45555 57899999999998
No 7
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=13.86 E-value=6.2 Score=30.26 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=24.5
Q ss_pred cccc-ceeeeEeeCCCCCCCCCCCCCcE--EEE-EeChhhHhhc
Q 035076 21 APLL-KAVSWMENNSEKFFCSQSDGAHC--WTL-FSTAAYGKRN 60 (74)
Q Consensus 21 gafv-~~LsWiA~NssKPg~~rr~~~e~--Wvl-hAt~~wS~~H 60 (74)
|+++ ..+.|++|..|||+ -.|--| |+| |+-+...-++
T Consensus 353 ~~~~~~~~~w~~C~gs~~~---~rg~~C~lW~l~Htltv~~~~~ 393 (519)
T 3t58_A 353 DAVLTEKVNWVGCQGSEPH---FRGFPCSLWVLFHFLTVQANRY 393 (519)
T ss_dssp HHHTCSSCCCSTTBCSSTT---SBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCcccCCCCCcc---cCCcCcHHHHHHHHHHccCccC
Confidence 4455 67899999999998 335333 876 6555544433
No 8
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=8.56 E-value=3.6e+02 Score=15.82 Aligned_cols=43 Identities=5% Similarity=-0.027 Sum_probs=23.4
Q ss_pred ccccccccc-cee--eeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhcC
Q 035076 16 AASFKAPLL-KAV--SWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNK 61 (74)
Q Consensus 16 ~~~~~gafv-~~L--sWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~Hk 61 (74)
|++|||.|+ ... +--.+-+... +....++-.++.+.+-..+..
T Consensus 14 d~~~dg~f~~~v~tt~iycrp~~~~---~~p~~~nv~~~~~~~~A~~~g 59 (133)
T 1u8b_A 14 DPNADGEFVFAVRTTGIFCRPSCRA---RHALRENVSFYANASEALAAG 59 (133)
T ss_dssp CGGGBTTBEEEETTTTEEECTTCCS---CCCCGGGEEEESSHHHHHHTT
T ss_pred CcccCCeEEEEeCcccEeecCCCCC---CCCCccceecccCHHHHHHhC
Confidence 456999988 321 1122222222 133446678888877776544
No 9
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=8.35 E-value=39 Score=19.97 Aligned_cols=20 Identities=5% Similarity=-0.099 Sum_probs=15.6
Q ss_pred cccccc--ce-eeeEee--CCCCCC
Q 035076 19 FKAPLL--KA-VSWMEN--NSEKFF 38 (74)
Q Consensus 19 ~~gafv--~~-LsWiA~--NssKPg 38 (74)
|+|..+ ++ =||||+ +-.+||
T Consensus 38 w~G~ViI~dPe~S~IAK~l~i~~pG 62 (69)
T 1ryq_A 38 WFDLVIIVDVENSEIAKKIGAKVPG 62 (69)
T ss_dssp EEEEEEESCGGGCHHHHHHTCCSCE
T ss_pred cceEEEEeCCchhHHHHHhCCCCCc
Confidence 888777 54 589988 777887
No 10
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.65 E-value=1.2e+02 Score=17.13 Aligned_cols=20 Identities=15% Similarity=-0.127 Sum_probs=15.2
Q ss_pred cccccc----ceeeeEeeCCCCCC
Q 035076 19 FKAPLL----KAVSWMENNSEKFF 38 (74)
Q Consensus 19 ~~gafv----~~LsWiA~NssKPg 38 (74)
.+++.| +.+.-+|+++.|||
T Consensus 34 C~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 34 CSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCeeEccCccCCceeeEcCCcCCC
Confidence 456666 46888899999886
Done!