Query 035076
Match_columns 74
No_of_seqs 100 out of 103
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j20a1 c.26.2.1 (A:1-165) Arg 14.9 31 0.0022 18.4 1.3 9 55-63 155-163 (165)
2 d1q1ca2 d.26.1.1 (A:141-257) F 9.8 73 0.0053 17.4 1.9 29 45-73 74-103 (117)
3 d1g0da3 b.1.5.1 (A:584-684) Tr 6.9 1.2E+02 0.0091 16.8 2.0 55 1-60 18-76 (101)
4 d2ah2a1 b.29.1.15 (A:409-633) 6.6 54 0.0039 21.7 0.2 20 46-68 72-91 (225)
5 d1pm4a_ b.135.1.1 (A:) Superan 6.6 83 0.006 18.5 1.1 19 19-37 72-93 (117)
6 d1sddb1 b.6.1.3 (B:1657-1723) 6.6 2E+02 0.014 14.8 3.1 30 27-59 11-42 (67)
7 d2a8ea1 d.296.1.1 (A:2-211) Hy 6.1 1.5E+02 0.011 19.1 2.3 11 45-55 68-78 (210)
8 d2pxrc1 a.73.1.1 (C:1-145) HIV 5.8 1.3E+02 0.0097 18.4 1.8 18 53-70 77-94 (145)
9 d1xdpa4 d.136.1.4 (A:502-688) 5.5 89 0.0064 19.8 0.8 19 42-60 98-116 (187)
10 d1n1ta1 b.29.1.15 (A:413-634) 5.2 72 0.0052 21.0 0.2 20 46-68 72-91 (222)
No 1
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.89 E-value=31 Score=18.38 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=5.4
Q ss_pred hhHhhcCCC
Q 035076 55 AYGKRNKVP 63 (74)
Q Consensus 55 ~wS~~Hk~p 63 (74)
+|.++|++|
T Consensus 155 ~ya~~~~iP 163 (165)
T d1j20a1 155 AYAEAHGIP 163 (165)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHhCCC
Confidence 556666665
No 2
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.83 E-value=73 Score=17.36 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=20.3
Q ss_pred CcEEEEEeChhhHh-hcCCCCccCCcceec
Q 035076 45 AHCWTLFSTAAYGK-RNKVPQVFLHINVCL 73 (74)
Q Consensus 45 ~e~WvlhAt~~wS~-~Hk~pqe~ip~~~~~ 73 (74)
++.|++.-.++++= ..+.|...||++-.|
T Consensus 74 Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l 103 (117)
T d1q1ca2 74 GEHSIVYLKPSYAFGSVGKEKFQIPPNAEL 103 (117)
T ss_dssp TCEEEEEECGGGTTTTTCBGGGTBCTTCCE
T ss_pred hCeEEEEECHHHhCcccCCCCCccCcCCeE
Confidence 36788887777753 456788889987544
No 3
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=6.92 E-value=1.2e+02 Score=16.75 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=29.2
Q ss_pred CeeEEeecCCcccccccc---cccccc-ceeeeEeeCCCCCCCCCCCCCcEEEEEeChhhHhhc
Q 035076 1 MGVLAASEDPCLLVSAAS---FKAPLL-KAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRN 60 (74)
Q Consensus 1 ~alm~aF~~Pl~~~~~~~---~~gafv-~~LsWiA~NssKPg~~rr~~~e~WvlhAt~~wS~~H 60 (74)
|.+.+.|..||+.+-.+- .||.-+ ......-.+.=.|| +.-.|.+.-+|..+-.+
T Consensus 18 ~~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~~v~p~-----~~~~~~~~~~P~~~G~~ 76 (101)
T d1g0da3 18 LTAYVSFTNPLPVPLKGGVFTLEGAGLLSATQIHVNGAVAPS-----GKVSVKLSFSPMRTGVR 76 (101)
T ss_dssp EEEEEEEECCSSSCEESCEEEEEETTTEEEEEEECSSEECTT-----CEEEEEEEECCSSCEEE
T ss_pred EEEEEEEECCCCCeecCEEEEEEcCCCCcccEEEecCCcCCC-----CEEEEEEEEEcCCcccE
Confidence 457789999999772111 233222 23333223445565 23457777777655443
No 4
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=6.62 E-value=54 Score=21.67 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.3
Q ss_pred cEEEEEeChhhHhhcCCCCccCC
Q 035076 46 HCWTLFSTAAYGKRNKVPQVFLH 68 (74)
Q Consensus 46 e~WvlhAt~~wS~~Hk~pqe~ip 68 (74)
.-.||=||-. .|+||++.+|
T Consensus 72 ~~FTLVATVs---I~~vP~g~tP 91 (225)
T d2ah2a1 72 HAFTLVASVT---IHEVPKGASP 91 (225)
T ss_dssp TEEEEEEEEE---ECSCCSSEEE
T ss_pred cCEEEEEEEE---EecccCCCCc
Confidence 4577777764 5899999987
No 5
>d1pm4a_ b.135.1.1 (A:) Superantigen (mitogen) Ypm {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=6.61 E-value=83 Score=18.48 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=12.6
Q ss_pred ccccccceeeeE---eeCCCCC
Q 035076 19 FKAPLLKAVSWM---ENNSEKF 37 (74)
Q Consensus 19 ~~gafv~~LsWi---A~NssKP 37 (74)
|+-.+.+-|||| .||||.-
T Consensus 72 yedyyt~glswiw~iknnsse~ 93 (117)
T d1pm4a_ 72 YEDYYTSGLSWIWKIKNNSSET 93 (117)
T ss_dssp EEEEESSCCCEEEEEEECSSSC
T ss_pred chhcccCCceEEEEEcCCCccc
Confidence 666665558885 6777654
No 6
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.55 E-value=2e+02 Score=14.85 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=20.8
Q ss_pred eeeEeeCCCCCCCCCCCCCcE--EEEEeChhhHhh
Q 035076 27 VSWMENNSEKFFCSQSDGAHC--WTLFSTAAYGKR 59 (74)
Q Consensus 27 LsWiA~NssKPg~~rr~~~e~--WvlhAt~~wS~~ 59 (74)
-.|...+.+-|+ ...+.| |--||.-...++
T Consensus 11 Y~w~v~~~~gp~---~~d~~c~t~~YHsHv~~~~q 42 (67)
T d1sddb1 11 YVWHATTRSGPE---NPGSACRAWAYYSAVNPEKD 42 (67)
T ss_dssp CCEECCTTTSCC---SSSCSEEEEEEECCSSHHHH
T ss_pred EEEEcCCcCCCc---cCCCCceeEEEEcccchHHH
Confidence 468888888787 444444 778998776553
No 7
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus subtilis [TaxId: 1423]}
Probab=6.07 E-value=1.5e+02 Score=19.11 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=9.0
Q ss_pred CcEEEEEeChh
Q 035076 45 AHCWTLFSTAA 55 (74)
Q Consensus 45 ~e~WvlhAt~~ 55 (74)
.++||.+|+..
T Consensus 68 ~dTWvAfs~nK 78 (210)
T d2a8ea1 68 ADSWVAFANSK 78 (210)
T ss_dssp SCEEEEEESCS
T ss_pred ccceeeecCCC
Confidence 47999999863
No 8
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=5.82 E-value=1.3e+02 Score=18.43 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=14.6
Q ss_pred ChhhHhhcCCCCccCCcc
Q 035076 53 TAAYGKRNKVPQVFLHIN 70 (74)
Q Consensus 53 t~~wS~~Hk~pqe~ip~~ 70 (74)
.++|.+.|-+++--+|+.
T Consensus 77 aaewDr~HP~~~gp~ppg 94 (145)
T d2pxrc1 77 AAEWDRLHPVHAGPIAPG 94 (145)
T ss_dssp HHHHHHHSCCCSSCSSTT
T ss_pred HHHHhccCCCCCCCCCCC
Confidence 368999999998888763
No 9
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=5.51 E-value=89 Score=19.81 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=13.8
Q ss_pred CCCCcEEEEEeChhhHhhc
Q 035076 42 SDGAHCWTLFSTAAYGKRN 60 (74)
Q Consensus 42 r~~~e~WvlhAt~~wS~~H 60 (74)
.+|++.+++-+|++|=.+|
T Consensus 98 ~n~g~~~~yi~SADwM~RN 116 (187)
T d1xdpa4 98 ENGGDKKVYLSSADWMTRN 116 (187)
T ss_dssp CGGGSCEEEEESCCBSHHH
T ss_pred ecCCCcceeecCcchhhHH
Confidence 3445568999999996654
No 10
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]}
Probab=5.24 E-value=72 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=14.7
Q ss_pred cEEEEEeChhhHhhcCCCCccCC
Q 035076 46 HCWTLFSTAAYGKRNKVPQVFLH 68 (74)
Q Consensus 46 e~WvlhAt~~wS~~Hk~pqe~ip 68 (74)
.-.||=||- ..||||++.+|
T Consensus 72 ~~FTLVATV---sI~~vP~g~~P 91 (222)
T d1n1ta1 72 YRFTLVATV---TIDELPKGTSP 91 (222)
T ss_dssp TEEEEEEEE---EECSCCSSEEE
T ss_pred CCeEEEEEE---EEccccCCCCc
Confidence 356777765 36899999887
Done!