BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035086
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
APQG+ V K +P++++VT+ +DI LN + ++PG+G+FGDRYFGT
Sbjct: 178 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
APQG+ V K +P++++VT+ +DI LN + ++PG+G+FGDRYFGT
Sbjct: 197 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 1 MDIFSSALCVSESH----QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGD 56
+D+ A C S AP+G+ + K+ P +++ T+ ID GLNE +IPG+G+ GD
Sbjct: 143 IDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGD 202
Query: 57 RYFGT 61
+ FGT
Sbjct: 203 KIFGT 207
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+G+ + K P ++V + ID LN+ ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+GV V K + +KI + +D LN+ +IPG+G+ GDR F T
Sbjct: 175 APEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
AP+GV V + P +K+ + +D L++ ++PG+G+ GDR FGT +
Sbjct: 170 APEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+GV V + P + I + +D LN+ ++PG+G+ GDR FGT
Sbjct: 163 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 208
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 6 SALCVSESHQ--APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
S L V H AP+G+ + + F ++I +D LN+ +IPG+G+ GDR +
Sbjct: 148 SPLKVKSVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAV 205
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 19 GVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60
GV+ + +P + + T ID LN ++PG+G+ GDR FG
Sbjct: 175 GVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 15 QAPQGVHVVCKSFPRL--KIVTSEIDIGLNEDFRVI--PGMGEFGD 56
+APQGVH++C S L + + S +D + F + P MG++GD
Sbjct: 100 KAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGD 145
>pdb|1WKY|A Chain A, Crystal Structure Of Alkaline Mannanase From Bacillus Sp.
Strain Jamb- 602: Catalytic Domain And Its Carbohydrate
Binding Module
Length = 464
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 33 VTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVVIRSQ 73
V + ID LN+D ++ +GEFG R+ D D+ ++ S+
Sbjct: 209 VRTNIDRVLNQDLALV--IGEFGHRHTNGDVDESTIMSYSE 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,319,791
Number of Sequences: 62578
Number of extensions: 83814
Number of successful extensions: 150
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)