Query 035086
Match_columns 73
No_of_seqs 110 out of 977
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dmp_A Uracil phosphoribosyltr 99.9 1.6E-24 5.3E-29 154.3 3.9 56 7-62 161-216 (217)
2 1xtt_A Probable uracil phospho 99.9 2.9E-23 9.8E-28 147.5 3.0 53 8-60 164-216 (216)
3 1v9s_A Uracil phosphoribosyltr 99.9 9.6E-23 3.3E-27 144.0 4.3 56 7-62 153-208 (208)
4 1o5o_A Uracil phosphoribosyltr 99.9 1.1E-22 3.7E-27 145.1 3.7 56 7-62 166-221 (221)
5 2ehj_A Uracil phosphoribosyltr 99.9 1.1E-22 3.7E-27 143.7 3.6 56 7-62 153-208 (208)
6 1bd3_D Uprtase, uracil phospho 99.9 1.7E-22 5.8E-27 145.9 4.5 57 6-62 187-243 (243)
7 1i5e_A Uracil phosphoribosyltr 99.8 3E-20 1E-24 129.9 3.7 55 8-62 155-209 (209)
8 2e55_A Uracil phosphoribosyltr 99.8 5.1E-20 1.7E-24 130.0 4.1 56 7-62 151-206 (208)
9 3m95_A Autophagy related prote 51.6 21 0.00073 23.0 4.0 34 18-51 24-62 (125)
10 2r2q_A Gamma-aminobutyric acid 49.2 24 0.0008 21.9 3.9 32 20-51 17-53 (110)
11 3h9d_A ATG8, microtubule-assoc 47.2 27 0.00093 22.2 4.0 35 18-52 19-58 (119)
12 2zjd_A Microtubule-associated 43.6 31 0.0011 22.3 3.9 32 19-50 24-61 (130)
13 3rui_B Autophagy-related prote 39.1 43 0.0015 21.2 4.0 34 18-51 18-56 (118)
14 2aee_A OPRT, oprtase, orotate 37.8 1 3.4E-05 30.2 -4.2 34 16-49 158-193 (211)
15 2f4n_A Hypothetical protein MJ 37.3 24 0.00083 25.6 2.8 23 20-43 67-89 (273)
16 3n3m_A Orotidine 5'-phosphate 36.3 30 0.001 25.8 3.3 27 16-56 264-290 (342)
17 1otr_A Protein CUE2; protein-p 32.8 22 0.00075 19.5 1.6 17 16-32 4-20 (49)
18 2fds_A Orotidine-monophosphate 32.5 34 0.0012 25.4 3.0 16 43-58 279-294 (352)
19 1eo6_A GATE-16, golgi-associat 28.8 77 0.0026 19.7 3.9 33 19-51 17-54 (117)
20 3ij6_A Uncharacterized metal-d 26.8 20 0.00069 25.0 0.9 18 21-38 191-208 (312)
21 4inf_A Metal-dependent hydrola 26.1 28 0.00095 25.3 1.6 17 21-37 248-264 (373)
22 2ql3_A Probable transcriptiona 25.5 47 0.0016 19.8 2.4 19 17-35 21-39 (209)
23 3nur_A Amidohydrolase; TIM bar 24.7 24 0.00082 25.4 1.0 17 21-37 238-254 (357)
24 3hhf_B Transcriptional regulat 23.8 54 0.0018 19.4 2.4 19 17-35 23-41 (213)
25 3kos_A HTH-type transcriptiona 23.5 54 0.0018 19.7 2.4 19 17-35 28-46 (219)
26 3irs_A Uncharacterized protein 23.1 70 0.0024 21.7 3.1 21 16-36 170-190 (291)
27 2y7p_A LYSR-type regulatory pr 23.1 59 0.002 20.0 2.5 20 17-36 24-43 (218)
28 2qsx_A Putative transcriptiona 22.8 60 0.0021 20.0 2.5 23 17-39 35-57 (218)
29 1i6a_A OXYR, hydrogen peroxide 22.3 58 0.002 19.8 2.4 18 17-34 21-38 (219)
30 2fyi_A HTH-type transcriptiona 22.1 59 0.002 19.9 2.4 19 17-35 30-48 (228)
31 3mw8_A Uroporphyrinogen-III sy 21.3 87 0.003 20.4 3.2 22 13-34 55-80 (240)
No 1
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=99.89 E-value=1.6e-24 Score=154.28 Aligned_cols=56 Identities=34% Similarity=0.651 Sum_probs=50.8
Q ss_pred hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
.+.+++++|||+|++++.++||+++||||+||++|||++||+|||||||||+|||+
T Consensus 161 ~I~~~~~vaa~egl~~l~~~~P~v~i~ta~iD~~Lne~~yIvPGlGDaGDR~fgt~ 216 (217)
T 3dmp_A 161 RLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216 (217)
T ss_dssp GEEEECSEECHHHHHHHHHHCTTCEEEESEECCEECTTSCEESSCSCHHHHHHC--
T ss_pred eEEEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCCCccCCCCCHHHhhcCCC
Confidence 34556679999999999999999999999999999999999999999999999986
No 2
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=99.87 E-value=2.9e-23 Score=147.52 Aligned_cols=53 Identities=30% Similarity=0.569 Sum_probs=50.1
Q ss_pred hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccC
Q 035086 8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60 (73)
Q Consensus 8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fg 60 (73)
+.+++++|||+|++++.++||+++||||+||++|||++||+|||||||||+||
T Consensus 164 I~~~~~vaa~~gl~~l~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fg 216 (216)
T 1xtt_A 164 IYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216 (216)
T ss_dssp EEEECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHCCCcEEEEEEecCCcCCCCCccCCCCChHhhccC
Confidence 44566699999999999999999999999999999999999999999999997
No 3
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.86 E-value=9.6e-23 Score=143.98 Aligned_cols=56 Identities=32% Similarity=0.629 Sum_probs=52.1
Q ss_pred hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
.+.+++++++|+|++++.++||+++|||++||++|||++||+||+||||||||||+
T Consensus 153 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 1v9s_A 153 GVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208 (208)
T ss_dssp SCEEEEEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEEEEEEeCHHHHHHHHHHCCCcEEEEEeecCCCCCCceecCCCCcHHHhccCCC
Confidence 34556679999999999999999999999999999999999999999999999984
No 4
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=99.86 E-value=1.1e-22 Score=145.10 Aligned_cols=56 Identities=36% Similarity=0.603 Sum_probs=52.0
Q ss_pred hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
.+.+++.+++|+|++++.++||+++|||++||++|||++||+|||||||||||||+
T Consensus 166 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~ID~~Lne~~yIvPGlGDaGDR~fGt~ 221 (221)
T 1o5o_A 166 KITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221 (221)
T ss_dssp EEEEECSEECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEEEEEEeCHHHHHHHHHHCCCcEEEEEeccCCCCCCceecCCCCcHHHhccCCC
Confidence 34456679999999999999999999999999999999999999999999999984
No 5
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=99.86 E-value=1.1e-22 Score=143.72 Aligned_cols=56 Identities=39% Similarity=0.684 Sum_probs=52.0
Q ss_pred hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
.+.+++++++|+|++++.++||+++|||++||++||+++||+||+||||||||||+
T Consensus 153 ~I~~~~lv~~p~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 2ehj_A 153 SIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208 (208)
T ss_dssp EEEEEEEEECHHHHHHHHHHCTTSEEEESCBCSEECTTSCEESCCSCHHHHHHTCC
T ss_pred EEEEEEEEeCHHHHHHHHHHCCCcEEEEEecCCCCCCCceecCCCCcHHHhhcCCC
Confidence 34456679999999999999999999999999999999999999999999999984
No 6
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=99.86 E-value=1.7e-22 Score=145.88 Aligned_cols=57 Identities=42% Similarity=0.880 Sum_probs=52.8
Q ss_pred hhhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 6 SALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 6 ~~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
+.+.+++++++|+|++++.++||+++|||++||++||+++||+|||||||||||||+
T Consensus 187 ~~I~~~~lvaap~g~~~l~~~~p~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 243 (243)
T 1bd3_D 187 ERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM 243 (243)
T ss_dssp GGEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTCCEESCCSCHHHHHHTCC
T ss_pred ceEEEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCceecCCCCcHHHhhcCCC
Confidence 345566779999999999999999999999999999999999999999999999984
No 7
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=99.79 E-value=3e-20 Score=129.88 Aligned_cols=55 Identities=35% Similarity=0.598 Sum_probs=51.4
Q ss_pred hcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 8 LCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 8 l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
+.+++++++++|++++.++||++.|||++||++||+++||+||+||+|||+|||+
T Consensus 155 I~~~~lv~~~~g~~~l~~~~p~~~I~t~~id~~l~~~~~i~Pglgdagdr~fgt~ 209 (209)
T 1i5e_A 155 IKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_dssp EEEECSEECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred EEEEEEEECHHHHHHHHHhCcCcEEEEEEeCCCCCCCceEccCCchHHHHhcCCC
Confidence 4455669999999999999999999999999999999999999999999999984
No 8
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=99.79 E-value=5.1e-20 Score=130.03 Aligned_cols=56 Identities=27% Similarity=0.570 Sum_probs=52.1
Q ss_pred hhcccccccCHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccccccCCC
Q 035086 7 ALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62 (73)
Q Consensus 7 ~l~~~svias~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GDR~fgt~ 62 (73)
.+.+++++++|+|++++.++||+++|||++||++||+++||+||+||+|||+|||+
T Consensus 151 ~I~~~~lv~~~~g~~~l~~~~p~v~I~t~~iD~~l~e~~~I~PglgdagdR~fgt~ 206 (208)
T 2e55_A 151 KVKSVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206 (208)
T ss_dssp EEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTSCEESSCSSHHHHHHSCC
T ss_pred EEEEEEEEECHHHHHHHHHHCCCcEEEEEeecCCCCCCceeccCccHHHHHhcCCC
Confidence 34456669999999999999999999999999999999999999999999999996
No 9
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.57 E-value=21 Score=23.04 Aligned_cols=34 Identities=9% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCC-cEEEEEecc----CCCCCCCeeecCC
Q 035086 18 QGVHVVCKSFPR-LKIVTSEID----IGLNEDFRVIPGM 51 (73)
Q Consensus 18 ~Gi~~v~~~fP~-v~Ivta~ID----~~Ld~~~yIvPGl 51 (73)
+-.+++.++||+ +.|++=... |.|+.+.|++|.=
T Consensus 24 ~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~ 62 (125)
T 3m95_A 24 AEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSD 62 (125)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETT
T ss_pred HHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCC
Confidence 456788999999 677665544 4788899999973
No 10
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=49.20 E-value=24 Score=21.89 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHhCCC-cEEEEEecc----CCCCCCCeeecCC
Q 035086 20 VHVVCKSFPR-LKIVTSEID----IGLNEDFRVIPGM 51 (73)
Q Consensus 20 i~~v~~~fP~-v~Ivta~ID----~~Ld~~~yIvPGl 51 (73)
.+++.++||+ +.|++=... |.|+.+.|++|.=
T Consensus 17 ~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~ 53 (110)
T 2r2q_A 17 GEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSD 53 (110)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETT
T ss_pred HHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCC
Confidence 5678899998 666666654 5788899999983
No 11
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=47.24 E-value=27 Score=22.21 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCC-cEEEEEecc----CCCCCCCeeecCCC
Q 035086 18 QGVHVVCKSFPR-LKIVTSEID----IGLNEDFRVIPGMG 52 (73)
Q Consensus 18 ~Gi~~v~~~fP~-v~Ivta~ID----~~Ld~~~yIvPGlG 52 (73)
+-.+++.++||+ +.|++=... |.|+.+.|++|.==
T Consensus 19 ~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~ 58 (119)
T 3h9d_A 19 SDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDL 58 (119)
T ss_dssp HHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTC
T ss_pred HHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCC
Confidence 456788999999 677665544 46888999999733
No 12
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=43.65 E-value=31 Score=22.32 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=24.8
Q ss_pred HHHHHHHhCCC-cEEEEEec-----cCCCCCCCeeecC
Q 035086 19 GVHVVCKSFPR-LKIVTSEI-----DIGLNEDFRVIPG 50 (73)
Q Consensus 19 Gi~~v~~~fP~-v~Ivta~I-----D~~Ld~~~yIvPG 50 (73)
=.+++.++||+ +.|++=.. =|.|+.+.|++|.
T Consensus 24 e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~ 61 (130)
T 2zjd_A 24 DVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD 61 (130)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEET
T ss_pred HHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCC
Confidence 46788999998 67776333 3688999999996
No 13
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=39.08 E-value=43 Score=21.19 Aligned_cols=34 Identities=6% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCC-cEEEEEecc----CCCCCCCeeecCC
Q 035086 18 QGVHVVCKSFPR-LKIVTSEID----IGLNEDFRVIPGM 51 (73)
Q Consensus 18 ~Gi~~v~~~fP~-v~Ivta~ID----~~Ld~~~yIvPGl 51 (73)
+-.+++.++||+ +.|++=.-. |.|+.+.|++|.=
T Consensus 18 ~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~ 56 (118)
T 3rui_B 18 AESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPAD 56 (118)
T ss_dssp HHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETT
T ss_pred HHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCC
Confidence 456788999999 666664443 3678889999973
No 14
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=37.79 E-value=1 Score=30.22 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CHHHHHHHHHh-CCCcEEEEE-eccCCCCCCCeeec
Q 035086 16 APQGVHVVCKS-FPRLKIVTS-EIDIGLNEDFRVIP 49 (73)
Q Consensus 16 s~~Gi~~v~~~-fP~v~Ivta-~ID~~Ld~~~yIvP 49 (73)
+++|.+++.+. +|.+.+++. .+++.+++++||.+
T Consensus 158 ~~~~~~~l~~~~~~~~~l~~~~~i~~~l~~~~~i~~ 193 (211)
T 2aee_A 158 LPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITN 193 (211)
T ss_dssp CHHHHHHHHHHTCCEEESCCHHHHHHHHHHHTSSCH
T ss_pred cccHHHHHHhCCCCEEEEeeHHHHHHHHHHcCCCCH
Confidence 68899999775 777777777 78888888888754
No 15
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii}
Probab=37.25 E-value=24 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHhCCCcEEEEEeccCCCCC
Q 035086 20 VHVVCKSFPRLKIVTSEIDIGLNE 43 (73)
Q Consensus 20 i~~v~~~fP~v~Ivta~ID~~Ld~ 43 (73)
|......||+ +|+.+-|||++..
T Consensus 67 L~~~~~yfP~-TVhv~VVDPGVGt 89 (273)
T 2f4n_A 67 LLTAIPYFPP-SVHVAVIDPTVGS 89 (273)
T ss_dssp HHHHGGGSCS-CEEEEECCCC---
T ss_pred HHHhhccCCC-cEEEEEECCCCCC
Confidence 4455567999 9999999998753
No 16
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*
Probab=36.30 E-value=30 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=16.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeccCCCCCCCeeecCCCcccc
Q 035086 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGD 56 (73)
Q Consensus 16 s~~Gi~~v~~~fP~v~Ivta~ID~~Ld~~~yIvPGlGD~GD 56 (73)
||+-+..+.+..|+.. .+.||+|.-|+
T Consensus 264 sp~e~~~iR~~~p~~~--------------iLtPGIGAQgg 290 (342)
T 3n3m_A 264 SYDEMNYIRTYFPNCY--------------ILSPGIGAQNG 290 (342)
T ss_dssp CHHHHHHHHHHSTTCC--------------EEECCSSTTCC
T ss_pred CHHHHHHHHHhCCCCe--------------EEeCCCCcCCC
Confidence 5666666665555433 36788876554
No 17
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=32.78 E-value=22 Score=19.52 Aligned_cols=17 Identities=12% Similarity=0.340 Sum_probs=14.1
Q ss_pred CHHHHHHHHHhCCCcEE
Q 035086 16 APQGVHVVCKSFPRLKI 32 (73)
Q Consensus 16 s~~Gi~~v~~~fP~v~I 32 (73)
..+.++.+.+.||.+..
T Consensus 4 ~e~~v~~L~EMFP~~~~ 20 (49)
T 1otr_A 4 HESKLSILMDMFPAISK 20 (49)
T ss_dssp HHHHHHHHHHHCSSSCH
T ss_pred hHHHHHHHHHHCCCCCH
Confidence 46889999999999753
No 18
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A
Probab=32.46 E-value=34 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=7.4
Q ss_pred CCCeeecCCCcccccc
Q 035086 43 EDFRVIPGMGEFGDRY 58 (73)
Q Consensus 43 ~~~yIvPGlGD~GDR~ 58 (73)
+-..+.||+|+.|+..
T Consensus 279 ~~~iLtPGIGaqgGdq 294 (352)
T 2fds_A 279 DSYILSPGIGAQNGDL 294 (352)
T ss_dssp TCCEEECCC-----CH
T ss_pred CCEEEcCccccccCcH
Confidence 3445899999886554
No 19
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.79 E-value=77 Score=19.74 Aligned_cols=33 Identities=6% Similarity=0.355 Sum_probs=24.2
Q ss_pred HHHHHHHhCCC-cEEEEEecc----CCCCCCCeeecCC
Q 035086 19 GVHVVCKSFPR-LKIVTSEID----IGLNEDFRVIPGM 51 (73)
Q Consensus 19 Gi~~v~~~fP~-v~Ivta~ID----~~Ld~~~yIvPGl 51 (73)
=.+++.++||+ +.|++=... |.|+.+.|++|.=
T Consensus 17 e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~ 54 (117)
T 1eo6_A 17 ESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSD 54 (117)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETT
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCC
Confidence 35778899998 666554442 5788899999973
No 20
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=26.76 E-value=20 Score=24.99 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.5
Q ss_pred HHHHHhCCCcEEEEEecc
Q 035086 21 HVVCKSFPRLKIVTSEID 38 (73)
Q Consensus 21 ~~v~~~fP~v~Ivta~ID 38 (73)
..+.++||++||+.+..=
T Consensus 191 ~gv~~rfP~Lkii~~H~G 208 (312)
T 3ij6_A 191 SDLFQDYPNLKILVHHAG 208 (312)
T ss_dssp TTHHHHCTTCCEEESGGG
T ss_pred cChHhhCCCCeEEecCCc
Confidence 367899999999987653
No 21
>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*
Probab=26.09 E-value=28 Score=25.31 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHHHhCCCcEEEEEec
Q 035086 21 HVVCKSFPRLKIVTSEI 37 (73)
Q Consensus 21 ~~v~~~fP~v~Ivta~I 37 (73)
..++++||++||+.+..
T Consensus 248 ~gv~~rfP~LkiilaH~ 264 (373)
T 4inf_A 248 IGIFDKYPSLQIMVGHM 264 (373)
T ss_dssp HTHHHHCTTCCEEECHH
T ss_pred cCchhhCcCCeEEEecc
Confidence 34789999999998864
No 22
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=25.48 E-value=47 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 035086 17 PQGVHVVCKSFPRLKIVTS 35 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta 35 (73)
++=+.++.++||+++|-.-
T Consensus 21 ~~~l~~f~~~~P~i~i~l~ 39 (209)
T 2ql3_A 21 PSMLYAFTAEYPRASVEFR 39 (209)
T ss_dssp HHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 6788999999999876543
No 23
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Probab=24.68 E-value=24 Score=25.38 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=14.0
Q ss_pred HHHHHhCCCcEEEEEec
Q 035086 21 HVVCKSFPRLKIVTSEI 37 (73)
Q Consensus 21 ~~v~~~fP~v~Ivta~I 37 (73)
..++++||++||+.+..
T Consensus 238 ~gv~~rfP~LkiilaH~ 254 (357)
T 3nur_A 238 SGIFDRYPKLNMIIGHW 254 (357)
T ss_dssp TTHHHHSTTCCEEECGG
T ss_pred cCchhhCCCCeEEEecc
Confidence 44789999999998764
No 24
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=23.84 E-value=54 Score=19.41 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 035086 17 PQGVHVVCKSFPRLKIVTS 35 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta 35 (73)
++=+.++.++||++++-.-
T Consensus 23 ~~~l~~f~~~~P~v~l~i~ 41 (213)
T 3hhf_B 23 APLAAKFNERYPHIRLSLV 41 (213)
T ss_dssp HHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 5678999999999876554
No 25
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=23.54 E-value=54 Score=19.71 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 035086 17 PQGVHVVCKSFPRLKIVTS 35 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta 35 (73)
++=+.++.++||+++|-..
T Consensus 28 ~~~l~~f~~~~P~i~l~i~ 46 (219)
T 3kos_A 28 FPLLSDFKRSYPHIDLHIS 46 (219)
T ss_dssp HHHHHHHHHHCTTEEEEEE
T ss_pred HhHHHHHHHHCCCceEEEE
Confidence 5778999999999866543
No 26
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=23.13 E-value=70 Score=21.73 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEe
Q 035086 16 APQGVHVVCKSFPRLKIVTSE 36 (73)
Q Consensus 16 s~~Gi~~v~~~fP~v~Ivta~ 36 (73)
.+.-+..+.++||+++++.+-
T Consensus 170 ~p~~~~~v~~~~P~l~ivl~H 190 (291)
T 3irs_A 170 NPEHIDRVLGDFPDLTVVSSH 190 (291)
T ss_dssp CHHHHHHHHHHCTTCCEEEEG
T ss_pred CHHHHHHHHHHCCCCEEEeec
Confidence 456789999999999998765
No 27
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=23.12 E-value=59 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q 035086 17 PQGVHVVCKSFPRLKIVTSE 36 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta~ 36 (73)
|+=+.++.++||++++-.-.
T Consensus 24 p~~l~~f~~~~P~v~l~l~~ 43 (218)
T 2y7p_A 24 PPLMEALAQRAPHIQISTLR 43 (218)
T ss_dssp HHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEEe
Confidence 56788999999998875543
No 28
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=22.84 E-value=60 Score=20.01 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeccC
Q 035086 17 PQGVHVVCKSFPRLKIVTSEIDI 39 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta~ID~ 39 (73)
+.=|.++.++||+++|-.-.-+.
T Consensus 35 ~~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 35 VPNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp HHHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHHCCCeEEEEEecCC
Confidence 45678999999998765544333
No 29
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=22.32 E-value=58 Score=19.75 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCcEEEE
Q 035086 17 PQGVHVVCKSFPRLKIVT 34 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivt 34 (73)
++=+.++.++||+++|-.
T Consensus 21 ~~~l~~f~~~~P~v~l~l 38 (219)
T 1i6a_A 21 PHIIPMLHQTFPKLEMYL 38 (219)
T ss_dssp HHHHHHHHHHCTTEEEEE
T ss_pred hHHHHHHHHHCCCeEEEE
Confidence 567888999999987644
No 30
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=22.06 E-value=59 Score=19.94 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 035086 17 PQGVHVVCKSFPRLKIVTS 35 (73)
Q Consensus 17 ~~Gi~~v~~~fP~v~Ivta 35 (73)
|+=+.++.++||+++|-.-
T Consensus 30 ~~~l~~f~~~~P~v~l~l~ 48 (228)
T 2fyi_A 30 PEVIKAFRELFPEVRLELI 48 (228)
T ss_dssp HHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 5678889999999876443
No 31
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=21.35 E-value=87 Score=20.43 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=16.9
Q ss_pred cccCHHHHHHHHHh----CCCcEEEE
Q 035086 13 SHQAPQGVHVVCKS----FPRLKIVT 34 (73)
Q Consensus 13 vias~~Gi~~v~~~----fP~v~Ivt 34 (73)
++.|+.|++.+.+. +|+.++++
T Consensus 55 iftS~~aV~~~~~~l~~~l~~~~~~a 80 (240)
T 3mw8_A 55 IFISTSAVSFATPWLKDQWPKATYYA 80 (240)
T ss_dssp EECSHHHHHHHHHHHTTCCCSSEEEE
T ss_pred EEECHHHHHHHHHHHHhhCcCCeEEE
Confidence 37999999999875 56766654
Done!