RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 035086
         (73 letters)



>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
           transport and metabolism].
          Length = 210

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
           AP+G+  V K+ P ++I T+ ID GLNE   ++PG+G+ GDR FGT 
Sbjct: 164 APEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210


>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase.  A fairly deep
           split in phylogenetic and UPGMA trees separates this
           mostly prokaryotic set of uracil
           phosphoribosyltransferases from a mostly eukaryotic set
           that includes uracil phosphoribosyltransferase, uridine
           kinases, and other, uncharacterized proteins [Purines,
           pyrimidines, nucleosides, and nucleotides, Salvage of
           nucleosides and nucleotides].
          Length = 207

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  V K+ P + I T+ ID  LN++  ++PG+G+ GDR FGT
Sbjct: 161 APEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGT 206


>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
          Length = 209

 Score = 49.7 bits (120), Expect = 4e-09
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + ++ P ++I T+ ID  LNE   ++PG+G+ GDR FGT
Sbjct: 163 APEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGT 208


>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
          Length = 244

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP  +  + + FP L +    ID  +NE   ++PG+G+ GDR FGT
Sbjct: 198 APPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243


>gnl|CDD|236742 PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional.
          Length = 191

 Score = 28.0 bits (63), Expect = 0.27
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 4   FSSALCVSESHQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGD---RYF- 59
           F S+L VSE     QGV  +  S P  +     I   L+ D+R+  GM        R+F 
Sbjct: 35  FGSSLEVSE-----QGVGGITASTPLQE---QAIADALDGDYRLRSGMKTANGNVVRFFQ 86

Query: 60  GTDDDDQQVVIRSQ 73
               D   +VI  Q
Sbjct: 87  AMKGDQVAMVINGQ 100


>gnl|CDD|234792 PRK00558, uvrC, excinuclease ABC subunit C; Validated.
          Length = 598

 Score = 25.5 bits (57), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 10/39 (25%)

Query: 25  KSFPRLKIVTSEIDIGLNEDF-RVIP--GMGEFGDRYFG 60
           KS+P +KI T       NE+F R+    G+ +   RYFG
Sbjct: 97  KSYPYIKITT-------NEEFPRLAITRGVAKDKGRYFG 128


>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional.
          Length = 270

 Score = 25.0 bits (55), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 4   FSSALCVSESHQAPQGVHVVCKSF 27
            S  L V E      GVHVVC SF
Sbjct: 159 LSETLLV-ELADDEIGVHVVCPSF 181


>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit
          HisH; Provisional.
          Length = 200

 Score = 23.7 bits (52), Expect = 9.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 32 IVTSEIDIGLNEDFRVIPGMGEFGD 56
          ++TS+ +  L+ D  V+PG+G FG 
Sbjct: 28 VITSDPEEILDADGIVLPGVGAFGA 52


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,699,216
Number of extensions: 279238
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 8
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)