RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 035086
(73 letters)
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 79.9 bits (197), Expect = 1e-20
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDD 63
AP+GV V + P +K+ + +D L++ ++PG+G+ GDR FGT +
Sbjct: 170 APEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 79.6 bits (196), Expect = 1e-20
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTD 62
AP+G+ + + F ++I +D LN+ +IPG+G+ GDR +
Sbjct: 160 APEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 78.0 bits (192), Expect = 5e-20
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+G+ + K P ++V + ID LN+ ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 78.5 bits (193), Expect = 6e-20
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
APQG+ V K +P++++VT+ +DI LN + ++PG+G+FGDRYFGT
Sbjct: 197 APQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 77.7 bits (191), Expect = 8e-20
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60
+ GV+ + +P + + T ID LN ++PG+G+ GDR FG
Sbjct: 172 SEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 76.5 bits (188), Expect = 2e-19
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+G+ + K+ P +++ T+ ID GLNE +IPG+G+ GD+ FGT
Sbjct: 162 APEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGT 207
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 75.3 bits (185), Expect = 8e-19
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+GV V K + +KI + +D LN+ +IPG+G+ GDR F T
Sbjct: 175 APEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 74.9 bits (184), Expect = 9e-19
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 16 APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
AP+GV V + P + I + +D LN+ ++PG+G+ GDR FGT
Sbjct: 163 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 208
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 0.78
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 8/37 (21%)
Query: 27 FPRLKIVTSEIDIGLN--------EDFRVIPGMGEFG 55
FP LK I E V+ G E G
Sbjct: 793 FPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVG 829
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 1.1
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 25/89 (28%)
Query: 6 SAL-CVSESHQAPQGVHVVCK-------SFPRLKIVTSEIDI-GLNEDFRVIPGMGEFGD 56
+AL +++ V VV + PR ++ S + +N RV +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEAL 1826
Query: 57 RYF------GTDD---------DDQQVVI 70
+Y T ++QQ V
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 25.9 bits (57), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 13 SHQAPQGVHVVCKSFPRLKIV 33
++ P+ + V FP L +V
Sbjct: 167 TYTNPEHIDRVLGDFPDLTVV 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.2
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 19 GVHVVCKSF-PRLKIVTSEIDIGL----NEDFRVIPGMGEFG 55
V K RL+ ++ L +I G+ G
Sbjct: 122 DNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSG 162
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 24.8 bits (55), Expect = 3.2
Identities = 4/23 (17%), Positives = 4/23 (17%), Gaps = 4/23 (17%)
Query: 50 GMGEFG----DRYFGTDDDDQQV 68
G G RY
Sbjct: 407 GEGSSRARNWQRYDLGGKQKLSF 429
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 23.6 bits (52), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 50 GMGEFG-------DRYFGTDDDDQQVV 69
GMG G DRYF TD+ ++V
Sbjct: 389 GMGSLGAMSKGSSDRYFQTDNAADKLV 415
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 23.3 bits (51), Expect = 8.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 32 IVTSEIDIGLNEDFRVIPGMGEFGDR 57
+ +EID+ L + R+ F DR
Sbjct: 230 VGVAEIDLSLVRNKRINDLNDIFKDR 255
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 23.4 bits (51), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 50 GMGEFG-------DRYFGTDDDDQQVV 69
GMG G DRYF TD+ ++V
Sbjct: 266 GMGSLGAMSKGSSDRYFQTDNAADKLV 292
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 23.2 bits (50), Expect = 9.3
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 14 HQAPQGVHVVCKSFPRLKIV 33
Q + + +CK+FP++ ++
Sbjct: 157 LQDIKEIAELCKAFPKVPVI 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.415
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,138,733
Number of extensions: 56740
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 19
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)