RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 035086
         (73 letters)



>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 68.8 bits (168), Expect = 7e-17
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+GV  V  + P + I  + +D  LN+   ++PG+G+ GDR FGT
Sbjct: 162 APEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGT 207


>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
           5811]}
          Length = 224

 Score = 68.8 bits (168), Expect = 9e-17
 Identities = 24/47 (51%), Positives = 37/47 (78%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
            APQG+  V K +P++++VT+ +DI LN  + ++PG+G+FGDRYFGT
Sbjct: 177 AAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 68.4 bits (167), Expect = 9e-17
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 16  APQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
           AP+G+  + K  P  ++V + ID  LN+   ++PG+G+ GDR +GT
Sbjct: 162 APEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGT 207


>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima
           [TaxId: 2336]}
          Length = 210

 Score = 68.1 bits (166), Expect = 1e-16
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGT 61
            AP+GV  V K +  +KI  + +D  LN+   +IPG+G+ GDR F T
Sbjct: 163 AAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 209


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 215

 Score = 67.7 bits (165), Expect = 2e-16
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 15  QAPQGVHVVCKSFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFG 60
            +  GV+ +   +P + + T  ID  LN    ++PG+G+ GDR FG
Sbjct: 170 SSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 215


>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 125

 Score = 24.6 bits (53), Expect = 1.1
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 14  HQAPQGVHVVCKSFPRLKIVTSEIDIGLNEDF-RVIPGMGEFGDRYFGTDDDDQQVVIR 71
           +    G+ V+ +     + ++ E    +N D   V      +  RY     + ++VVI 
Sbjct: 54  NADRSGLAVLSQVDGA-RWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIE 111


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 285

 Score = 24.7 bits (53), Expect = 1.2
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 36 EIDIGLNEDFRVIP--GMGEFGDRYFGTDDDDQQVVI 70
          EI     E  R+    G G FG+ + GT +   +V I
Sbjct: 13 EIPR---ESLRLEVKLGQGCFGEVWMGTWNGTTRVAI 46


>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 377

 Score = 24.1 bits (52), Expect = 1.8
 Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 38  DIGLNEDFRVIPGMGEFGDRYFGTDDD 64
           D+G++E + V P +     ++ G  D 
Sbjct: 78  DLGISESYVVAPNV---YQKFKGKPDH 101


>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 272

 Score = 24.2 bits (52), Expect = 1.8
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 5/37 (13%)

Query: 36 EIDIGLNEDFRVIP--GMGEFGDRYFGTDDDDQQVVI 70
          E+     E  +++   G G+FG+ + G  +   +V +
Sbjct: 9  EVP---RETLKLVERLGAGQFGEVWMGYYNGHTKVAV 42


>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase
          C-terminal domain {Archaeoglobus fulgidus [TaxId:
          2234]}
          Length = 191

 Score = 23.6 bits (50), Expect = 2.3
 Identities = 3/21 (14%), Positives = 8/21 (38%)

Query: 50 GMGEFGDRYFGTDDDDQQVVI 70
          G G+    +    +   + V+
Sbjct: 9  GEGKESAVFNCYSEKFGECVV 29


>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
          kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 322

 Score = 23.5 bits (50), Expect = 3.2
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 42 NEDFRVIP--GMGEFGDRYFGTDDDDQQVV 69
          ++DF  I   G G  G  +  +      V+
Sbjct: 5  DDDFEKISELGAGNGGVVFKVSHKPSGLVM 34


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
          falciparum) [TaxId: 5833]}
          Length = 286

 Score = 23.3 bits (49), Expect = 3.9
 Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 43 EDFRVIP--GMGEFGDRYFGTDDDDQQVVI 70
          E +  +   G G +G  Y   ++  +   +
Sbjct: 2  EKYHGLEKIGEGTYGVVYKAQNNYGETFAL 31


>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 287

 Score = 22.8 bits (48), Expect = 5.2
 Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 26 SFPRLKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDQQVV 69
          ++ + ++  ++I +        + G G++G+ Y G        V
Sbjct: 8  NYDKWEMERTDITMK-----HKL-GGGQYGEVYEGVWKKYSLTV 45


>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 263

 Score = 22.6 bits (48), Expect = 5.3
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 43 EDFRVIP--GMGEFGDRYFGTDDDDQQVV 69
          EDF +    G G+FG+ Y   +   + ++
Sbjct: 6  EDFEIGRPLGKGKFGNVYLAREKQSKFIL 34


>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 269

 Score = 22.6 bits (48), Expect = 5.7
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 43 EDFRVIP--GMGEFGDRYFGTDDDDQQVV 69
          ED+ V+   G G +G         D +++
Sbjct: 4  EDYEVLYTIGTGSYGRCQKIRRKSDGKIL 32


>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 258

 Score = 22.7 bits (48), Expect = 6.3
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 43 EDFRVIP--GMGEFGDRYFGTDDDDQQVVI 70
          +D   +   G G+FG   +G       V I
Sbjct: 4  KDLTFLKELGTGQFGVVKYGKWRGQYDVAI 33


>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 22.3 bits (47), Expect = 7.7
 Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 43 EDFRVIP--GMGEFGDRYFGTDDDDQQVV 69
          ED+ ++   G G +G+     +   ++ V
Sbjct: 5  EDWDLVQTLGEGAYGEVQLAVNRVTEEAV 33


>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
          kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 22.2 bits (47), Expect = 8.0
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 38 DIGLNEDFRVIP--GMGEFGDRYFGTDDDDQQVV 69
          D+   + + +I   G G FG  Y   + +   + 
Sbjct: 7  DLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLA 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 276,344
Number of extensions: 10384
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 22
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)