Query 035087
Match_columns 73
No_of_seqs 110 out of 342
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 99.8 2.1E-18 4.5E-23 122.6 6.5 60 8-72 45-111 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 99.5 8E-14 1.7E-18 87.4 6.4 50 23-72 2-58 (94)
3 KOG1726 HVA22/DP1 gene product 99.0 5.8E-10 1.2E-14 81.5 4.3 47 26-72 2-57 (225)
4 COG5052 YOP1 Protein involved 98.5 2.5E-07 5.5E-12 66.2 6.3 65 8-72 41-112 (186)
5 PF10067 DUF2306: Predicted me 73.5 20 0.00043 22.6 5.9 34 26-59 43-76 (103)
6 PF03741 TerC: Integral membra 71.3 12 0.00027 26.1 4.9 47 4-50 35-82 (183)
7 TIGR03716 R_switched_YkoY inte 63.6 17 0.00037 26.3 4.5 47 4-50 32-78 (215)
8 TIGR02848 spore_III_AC stage I 60.5 16 0.00034 22.3 3.3 27 44-70 21-55 (64)
9 PF09966 DUF2200: Uncharacteri 55.0 20 0.00044 24.0 3.4 30 31-62 5-40 (111)
10 PF07958 DUF1688: Protein of u 52.8 10 0.00022 30.5 1.9 14 55-68 282-295 (420)
11 TIGR03717 R_switched_YjbE inte 48.9 88 0.0019 21.7 6.4 48 5-52 38-85 (176)
12 TIGR03718 R_switched_Alx integ 43.5 56 0.0012 25.0 4.6 48 4-51 102-150 (302)
13 PF02723 NS3_envE: Non-structu 40.7 15 0.00032 23.4 0.9 32 23-54 45-80 (82)
14 COG4968 PilE Tfp pilus assembl 39.5 34 0.00073 23.7 2.6 19 26-44 17-35 (139)
15 PF14147 Spore_YhaL: Sporulati 36.2 38 0.00081 20.0 2.1 29 30-59 7-35 (52)
16 COG4898 Uncharacterized protei 34.8 48 0.001 22.2 2.7 27 31-59 8-39 (115)
17 PTZ00193 60S ribosomal protein 31.9 24 0.00052 25.6 1.0 19 41-59 22-40 (188)
18 PF11992 DUF3488: Domain of un 29.8 2.4E+02 0.0051 21.0 6.4 19 41-59 89-107 (325)
19 PRK11877 psaI photosystem I re 26.4 53 0.0012 18.1 1.6 16 26-41 11-26 (38)
20 CHL00186 psaI photosystem I su 25.2 67 0.0015 17.5 1.8 15 27-41 8-22 (36)
21 PRK08808 general secretion pat 23.3 2.5E+02 0.0054 20.2 5.0 17 28-44 20-36 (211)
22 PF01490 Aa_trans: Transmembra 23.3 60 0.0013 23.6 1.8 31 24-54 350-380 (409)
23 TIGR02842 CyoC cytochrome o ub 23.1 2.3E+02 0.0051 19.3 4.6 27 33-59 53-79 (180)
24 TIGR03097 PEP_O_lig_1 probable 23.0 2.4E+02 0.0051 21.4 5.0 35 25-59 330-364 (402)
25 TIGR03052 PS_I_psaI photosyste 21.7 61 0.0013 17.1 1.2 14 28-41 6-19 (31)
26 KOG4620 Uncharacterized conser 21.5 1.6E+02 0.0034 18.7 3.2 19 41-59 17-35 (80)
27 PF08579 RPM2: Mitochondrial r 20.6 62 0.0013 22.0 1.3 12 34-45 42-53 (120)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.1e-18 Score=122.62 Aligned_cols=60 Identities=28% Similarity=0.485 Sum_probs=52.0
Q ss_pred hhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087 8 YSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT 72 (73)
Q Consensus 8 ~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils 72 (73)
.|..++|++++- +++++||++|++||+|+|+|||||++++||+|||+ ++++|.+.+.+++
T Consensus 45 ~~l~~v~l~~g~-----~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~ 111 (186)
T KOG1725|consen 45 ILLLAVYLLFGS-----GGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILS 111 (186)
T ss_pred HHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555 45999999999999999999999999999999999 8999999998876
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.49 E-value=8e-14 Score=87.38 Aligned_cols=50 Identities=34% Similarity=0.705 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087 23 NIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT 72 (73)
Q Consensus 23 ~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils 72 (73)
|++++++|+++|++||||+|+||+|+++++|+++||+ ++++|.+.|.+++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~ 58 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILS 58 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788999999999999999999999999999999999 8889999888764
No 3
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=98.97 E-value=5.8e-10 Score=81.50 Aligned_cols=47 Identities=30% Similarity=0.578 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhc--CChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087 26 LRTACCSVVVALPVYSTFKAIER--KDEDEQQKWLI-------FSIAEVFADKFLT 72 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYaS~kAies--~~~~d~~qWLt-------f~~vE~~~d~ils 72 (73)
.|++.+++|.+||||+|+||+++ ++.+|..+|++ |++.|.++|.+++
T Consensus 2 ~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~ls 57 (225)
T KOG1726|consen 2 IRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLS 57 (225)
T ss_pred eehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999 77889999998 9999999999886
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=98.54 E-value=2.5e-07 Score=66.22 Aligned_cols=65 Identities=15% Similarity=-0.011 Sum_probs=50.1
Q ss_pred hhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH-------HHHHHHHHHhhhc
Q 035087 8 YSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI-------FSIAEVFADKFLT 72 (73)
Q Consensus 8 ~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt-------f~~vE~~~d~ils 72 (73)
.|..+++++..+..+...+-++.|..|+..|++-|.+|++++++.||+|||+ .+.+|.+...+++
T Consensus 41 ~~asf~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~ 112 (186)
T COG5052 41 AGASFLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILS 112 (186)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566655554333333499999999999999999999999999999999 6677777766654
No 5
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=73.52 E-value=20 Score=22.57 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH
Q 035087 26 LRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt 59 (73)
..+....+-.++-....+.+++.++.+++.+|+.
T Consensus 43 ~~~~~la~~~l~~~~~a~~~ar~~~i~~Hr~wM~ 76 (103)
T PF10067_consen 43 SGFHLLAVLWLITTFLAVRAARRGRIAAHRRWMI 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455556677888899999999999999999999
No 6
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=71.34 E-value=12 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=41.3
Q ss_pred hhhhhhhhhhHhhhhcchhhhHHH-HHHHHHHhhhHHHHHHHHHhcCC
Q 035087 4 FCHFYSQVGLRLLFCPLGSNIILR-TACCSVVVALPVYSTFKAIERKD 50 (73)
Q Consensus 4 ~~~~~g~vgl~lll~~~~s~i~~~-ll~~~iG~~YPAYaS~kAies~~ 50 (73)
.-++.|.+.+|.++...+++.... -...++|=+|=.|.++|-+..+.
T Consensus 35 ~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~~~~~ 82 (183)
T PF03741_consen 35 FWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLLHEER 82 (183)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788899999999999888888 88889999999999999998865
No 7
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=63.62 E-value=17 Score=26.32 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=40.2
Q ss_pred hhhhhhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCC
Q 035087 4 FCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKD 50 (73)
Q Consensus 4 ~~~~~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~ 50 (73)
.-++.|.+.+|.++...+++++...-...+|=+|=-|.++|-+..++
T Consensus 32 ~~Gi~gAivlR~i~i~~~~~Ll~~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 32 FYGLIGAYVFRFIALFLASFLIKFWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999888888889998999999999887643
No 8
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=60.46 E-value=16 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=20.4
Q ss_pred HHHhcCChhhhHHHHH--------HHHHHHHHHhh
Q 035087 44 KAIERKDEDEQQKWLI--------FSIAEVFADKF 70 (73)
Q Consensus 44 kAies~~~~d~~qWLt--------f~~vE~~~d~i 70 (73)
+-+|..+++|..+|.+ +.+++...|.+
T Consensus 21 ~vLk~sGkee~A~~~tLaG~iiVL~~Vi~~i~~LF 55 (64)
T TIGR02848 21 TILKQSGKEEQAQMVTLAGIVVVLFMVITLINDLF 55 (64)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999 66666665543
No 9
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=55.01 E-value=20 Score=24.03 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHHHHHHhcCChh-----hhHHHHH-HHH
Q 035087 31 CSVVVALPVYSTFKAIERKDED-----EQQKWLI-FSI 62 (73)
Q Consensus 31 ~~iG~~YPAYaS~kAies~~~~-----d~~qWLt-f~~ 62 (73)
-.++-+||.|-. -+|+++.. +-..||| |+-
T Consensus 5 m~FasVYp~yv~--K~ErKgRt~~Evd~vi~WLTGy~~ 40 (111)
T PF09966_consen 5 MSFASVYPLYVA--KAERKGRTKEEVDQVIRWLTGYDQ 40 (111)
T ss_dssp SBHHHHHHHHHH--HHHHTT--HHHHHHHHHHHH---H
T ss_pred chHHHHHHHHHH--HHHHcCCCHHHHHHHHHHHhcCCH
Confidence 346678999964 45555542 2267999 543
No 10
>PF07958 DUF1688: Protein of unknown function (DUF1688); InterPro: IPR012469 A family of uncharacterised fungal proteins.
Probab=52.76 E-value=10 Score=30.51 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH
Q 035087 55 QKWLIFSIAEVFAD 68 (73)
Q Consensus 55 ~qWLtf~~vE~~~d 68 (73)
+||||||++|.+..
T Consensus 282 sQWLtYSL~ePl~~ 295 (420)
T PF07958_consen 282 SQWLTYSLIEPLEW 295 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999999876
No 11
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=48.90 E-value=88 Score=21.70 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred hhhhhhhhhHhhhhcchhhhHHHHHHHHHHhhhHHHHHHHHHhcCChh
Q 035087 5 CHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPVYSTFKAIERKDED 52 (73)
Q Consensus 5 ~~~~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPAYaS~kAies~~~~ 52 (73)
-++.+...+++++...++++..--...+.|=++=.|.++|.+..+..+
T Consensus 38 ~G~~~A~vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~~~~~~ 85 (176)
T TIGR03717 38 WGTAGAIVLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLLEEEEE 85 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 356677788888888887777766667888889999999998765443
No 12
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=43.46 E-value=56 Score=25.03 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=37.6
Q ss_pred hhhhhhhhhhHhhhhcchhhhHHH-HHHHHHHhhhHHHHHHHHHhcCCh
Q 035087 4 FCHFYSQVGLRLLFCPLGSNIILR-TACCSVVVALPVYSTFKAIERKDE 51 (73)
Q Consensus 4 ~~~~~g~vgl~lll~~~~s~i~~~-ll~~~iG~~YPAYaS~kAies~~~ 51 (73)
.-++.|.+.+|.++...++..+.+ --...+|=+|=-|.++|-..++++
T Consensus 102 ~~Gi~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~ 150 (302)
T TIGR03718 102 FWGILGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDE 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456788999999999999888864 445667778888999998866543
No 13
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=40.73 E-value=15 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhhhH----HHHHHHHHhcCChhhh
Q 035087 23 NIILRTACCSVVVALP----VYSTFKAIERKDEDEQ 54 (73)
Q Consensus 23 ~i~~~ll~~~iG~~YP----AYaS~kAies~~~~d~ 54 (73)
+...++++.-...+|- +|+|+.-++.+..++|
T Consensus 45 ~~~n~~v~~P~~~vY~~~~~~Yk~ym~i~p~~~~~~ 80 (82)
T PF02723_consen 45 RLCNTTVYKPVIYVYNRGRNAYKSYMQIDPPPPDVD 80 (82)
T ss_pred hhhcceEecccHHHHHhhHHHHHHHHhCCCCCCccc
Confidence 4455666777788999 9999998888877755
No 14
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.49 E-value=34 Score=23.74 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 035087 26 LRTACCSVVVALPVYSTFK 44 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYaS~k 44 (73)
.-++.-+....||+|..+-
T Consensus 17 VaIv~ILa~IAyPSY~~yv 35 (139)
T COG4968 17 VAIVGILALIAYPSYQNYV 35 (139)
T ss_pred HHHHHHHHHHHhHhHHHHH
Confidence 3466677788999999873
No 15
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=36.18 E-value=38 Score=19.97 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHhhhHHHHHHHHHhcCChhhhHHHHH
Q 035087 30 CCSVVVALPVYSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 30 ~~~iG~~YPAYaS~kAies~~~~d~~qWLt 59 (73)
..++|.+.-+|..+|+.+...+ -|++|+-
T Consensus 7 ~vi~gI~~S~ym~v~t~~eE~~-~dq~~IE 35 (52)
T PF14147_consen 7 FVIAGIIFSGYMAVKTAKEERE-IDQEFIE 35 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 3568999999999999877644 4455543
No 16
>COG4898 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.81 E-value=48 Score=22.19 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=17.7
Q ss_pred HHHHhhhHHHHHHHHHhcCCh-----hhhHHHHH
Q 035087 31 CSVVVALPVYSTFKAIERKDE-----DEQQKWLI 59 (73)
Q Consensus 31 ~~iG~~YPAYaS~kAies~~~-----~d~~qWLt 59 (73)
-.+.-+||+|- .-+|.++. ++-.-|||
T Consensus 8 msfAsVYp~yi--aKvEkKgrtkeeVdevi~WLT 39 (115)
T COG4898 8 MSFASVYPAYI--AKVEKKGRTKEEVDEVISWLT 39 (115)
T ss_pred eeHHHHHHHHH--HHHHHcCCcHHHHHHHHHHHh
Confidence 34567899995 44566654 23467999
No 17
>PTZ00193 60S ribosomal protein L31; Provisional
Probab=31.92 E-value=24 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.1
Q ss_pred HHHHHHhcCChhhhHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt 59 (73)
+-=||+||...+||.+|-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (188)
T PTZ00193 22 ARKKAVESRKSRDDRRWKR 40 (188)
T ss_pred HHHHHHHhhcccchHHHHH
Confidence 3468999999999999964
No 18
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=29.80 E-value=2.4e+02 Score=21.02 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHhcCChhhhHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt 59 (73)
..+|.+|.++++|+.+.+.
T Consensus 89 ~~lKlle~k~~RD~~~l~~ 107 (325)
T PF11992_consen 89 LALKLLELKTRRDYYQLLL 107 (325)
T ss_pred HHHHHHhccccccHHHHHH
Confidence 4789999999999999776
No 19
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=26.45 E-value=53 Score=18.13 Aligned_cols=16 Identities=13% Similarity=-0.176 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhHHHH
Q 035087 26 LRTACCSVVVALPVYS 41 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYa 41 (73)
-.++..++|.+.||-.
T Consensus 11 PsI~VPlVGlvfPai~ 26 (38)
T PRK11877 11 PWIFVPLVGWVFPAVF 26 (38)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3578899999999964
No 20
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=25.23 E-value=67 Score=17.54 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhHHHH
Q 035087 27 RTACCSVVVALPVYS 41 (73)
Q Consensus 27 ~ll~~~iG~~YPAYa 41 (73)
.++..++|.+.||-+
T Consensus 8 sI~VPlVGlvfPai~ 22 (36)
T CHL00186 8 SILVPLVGLVFPAIA 22 (36)
T ss_pred hhHHhHHHHHHHHHH
Confidence 477889999999964
No 21
>PRK08808 general secretion pathway protein J; Validated
Probab=23.27 E-value=2.5e+02 Score=20.18 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=13.1
Q ss_pred HHHHHHHhhhHHHHHHH
Q 035087 28 TACCSVVVALPVYSTFK 44 (73)
Q Consensus 28 ll~~~iG~~YPAYaS~k 44 (73)
++..+.+.+||+|.+.-
T Consensus 20 i~~il~~~a~~s~~~~~ 36 (211)
T PRK08808 20 LLVGGLALAFATLRSAS 36 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566778999999876
No 22
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=23.25 E-value=60 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHhcCChhhh
Q 035087 24 IILRTACCSVVVALPVYSTFKAIERKDEDEQ 54 (73)
Q Consensus 24 i~~~ll~~~iG~~YPAYaS~kAies~~~~d~ 54 (73)
+.+.+.+..++++.|++.-+|.-+.+.++..
T Consensus 350 l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~ 380 (409)
T PF01490_consen 350 LVGALFGSFISFILPALLYLKLFKRKRNSFG 380 (409)
T ss_pred ccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence 3556788899999999999999877754433
No 23
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=23.09 E-value=2.3e+02 Score=19.25 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHhhhHHHHHHHHHhcCChhhhHHHHH
Q 035087 33 VVVALPVYSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 33 iG~~YPAYaS~kAies~~~~d~~qWLt 59 (73)
+.--.+.+.+.+|+|+++++.-.+||.
T Consensus 53 l~Ss~~~~~A~~a~~~~~~~~~~~~L~ 79 (180)
T TIGR02842 53 LLSSITFGFAMLAMNKKNKKMVILWLA 79 (180)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334456677888899888888888887
No 24
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=22.96 E-value=2.4e+02 Score=21.40 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCChhhhHHHHH
Q 035087 25 ILRTACCSVVVALPVYSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 25 ~~~ll~~~iG~~YPAYaS~kAies~~~~d~~qWLt 59 (73)
+-.++.-+.-+++|.+.+.+..+...++++.+|.-
T Consensus 330 ivGl~l~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (402)
T TIGR03097 330 FVGLALFLGLLALTLLRAGWLKRHARGIPELKWAV 364 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence 34555666677788888888877766666677864
No 25
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=21.68 E-value=61 Score=17.13 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=11.2
Q ss_pred HHHHHHHhhhHHHH
Q 035087 28 TACCSVVVALPVYS 41 (73)
Q Consensus 28 ll~~~iG~~YPAYa 41 (73)
++..++|.+.||-+
T Consensus 6 I~VPlVglvfPai~ 19 (31)
T TIGR03052 6 IFVPLVGLVFPAVF 19 (31)
T ss_pred eehhHHHHHHHHHH
Confidence 56788999999864
No 26
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=1.6e+02 Score=18.69 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=17.3
Q ss_pred HHHHHHhcCChhhhHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt 59 (73)
.++.|-+.|.+.+..+|+.
T Consensus 17 ~~lraa~~Kp~~~~~~~m~ 35 (80)
T KOG4620|consen 17 DLLRAARGKPGAEARRWMA 35 (80)
T ss_pred HHHHHhcCCCchHHHHHHH
Confidence 5788999999999999998
No 27
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=20.65 E-value=62 Score=21.95 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.8
Q ss_pred HhhhHHHHHHHH
Q 035087 34 VVALPVYSTFKA 45 (73)
Q Consensus 34 G~~YPAYaS~kA 45 (73)
-.+||.|+|+|-
T Consensus 42 N~I~~lYqslkR 53 (120)
T PF08579_consen 42 NIINPLYQSLKR 53 (120)
T ss_pred HHHHHHHHHHHh
Confidence 468999999885
Done!