Query 035087
Match_columns 73
No_of_seqs 110 out of 342
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c9p_A Uncharacterized protein 31.9 41 0.0014 22.0 3.0 31 27-59 7-42 (123)
2 2b3g_B Cellular tumor antigen 24.9 32 0.0011 17.0 1.2 10 50-59 14-23 (28)
3 1jb0_I Photosystem 1 reaction 24.7 37 0.0013 18.0 1.5 17 25-41 10-26 (38)
4 1x91_A Invertase/pectin methyl 22.8 1.3E+02 0.0045 18.1 4.1 20 40-59 87-106 (153)
5 1xg2_B Pectinesterase inhibito 18.8 1.5E+02 0.005 17.8 3.7 27 41-67 88-116 (153)
6 1wgn_A UBAP1, ubiquitin associ 18.7 90 0.0031 18.1 2.5 33 26-58 20-54 (63)
7 1oqw_A Fimbrial protein; type 16.1 1.5E+02 0.005 18.2 3.2 19 27-45 11-29 (144)
8 4ae4_A Ubiquitin-associated pr 16.0 89 0.003 19.5 2.2 34 26-59 9-44 (118)
9 2cj4_A Invertase inhibitor; pr 15.6 1.9E+02 0.0065 17.3 3.7 28 41-68 90-119 (150)
10 3tef_A VCTP, iron(III) ABC tra 14.0 1E+02 0.0034 20.0 2.1 31 38-68 239-275 (292)
No 1
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=31.87 E-value=41 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhcCChh-----hhHHHHH
Q 035087 27 RTACCSVVVALPVYSTFKAIERKDED-----EQQKWLI 59 (73)
Q Consensus 27 ~ll~~~iG~~YPAYaS~kAies~~~~-----d~~qWLt 59 (73)
|+..-.++-+||.|-. -+|+++.. +-..|||
T Consensus 7 ri~~msFasVYp~yv~--KaEkKGRTk~Evd~vI~WLT 42 (123)
T 3c9p_A 7 KLYNMKFAAVYLALIA--KVERKGGKAESVHQVTSWLT 42 (123)
T ss_dssp GGGGSBHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHH
T ss_pred hHHhchHHHHHHHHHH--HHHHcCCcHHHHHHHHHHHh
Confidence 4555667889999964 34555442 2367999
No 2
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=24.87 E-value=32 Score=17.03 Aligned_cols=10 Identities=20% Similarity=0.810 Sum_probs=6.9
Q ss_pred ChhhhHHHHH
Q 035087 50 DEDEQQKWLI 59 (73)
Q Consensus 50 ~~~d~~qWLt 59 (73)
+++|-.||++
T Consensus 14 spddi~qw~s 23 (28)
T 2b3g_B 14 SPDDIEQWFT 23 (28)
T ss_dssp CHHHHHHHHH
T ss_pred ChHHHHHHhh
Confidence 3456679986
No 3
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=24.71 E-value=37 Score=17.96 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhHHHH
Q 035087 25 ILRTACCSVVVALPVYS 41 (73)
Q Consensus 25 ~~~ll~~~iG~~YPAYa 41 (73)
.-.++..++|.+.||-.
T Consensus 10 LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 10 LPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp HHHHHHHHHHTHHHHHH
T ss_pred CChhhHhHHHHHHHHHH
Confidence 44678899999999864
No 4
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=22.76 E-value=1.3e+02 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=15.6
Q ss_pred HHHHHHHhcCChhhhHHHHH
Q 035087 40 YSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 40 YaS~kAies~~~~d~~qWLt 59 (73)
-.|.+++++++.+|-+.||.
T Consensus 87 ~~a~~~l~~~~~~d~~t~lS 106 (153)
T 1x91_A 87 EEAFEHLASGDGMGMNMKVS 106 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 35667788887788888998
No 5
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=18.85 E-value=1.5e+02 Score=17.77 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhhhHHHHH--HHHHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI--FSIAEVFA 67 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt--f~~vE~~~ 67 (73)
.+.+++++.+.+|-+.||. .+-.+.-.
T Consensus 88 ~a~~~l~~~~~~d~~t~lSaAlt~~~tC~ 116 (153)
T 1xg2_B 88 QAKQFLTSGDYNSLNIYASAAFDGAGTCE 116 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccchHH
Confidence 4566777777777788998 44444433
No 6
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=18.73 E-value=90 Score=18.15 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCh--hhhHHHH
Q 035087 26 LRTACCSVVVALPVYSTFKAIERKDE--DEQQKWL 58 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYaS~kAies~~~--~d~~qWL 58 (73)
...+.+++++.|.-....||++..+. +....||
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35688899999999999999998766 3556787
No 7
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=16.05 E-value=1.5e+02 Score=18.18 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 035087 27 RTACCSVVVALPVYSTFKA 45 (73)
Q Consensus 27 ~ll~~~iG~~YPAYaS~kA 45 (73)
-++.-+.++.+|+|.++..
T Consensus 11 ~Ii~il~~ia~p~~~~~~~ 29 (144)
T 1oqw_A 11 AIIGILAAIAIPQYQNYVA 29 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667788899999988754
No 8
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=15.98 E-value=89 Score=19.55 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcCChh--hhHHHHH
Q 035087 26 LRTACCSVVVALPVYSTFKAIERKDED--EQQKWLI 59 (73)
Q Consensus 26 ~~ll~~~iG~~YPAYaS~kAies~~~~--d~~qWLt 59 (73)
..++..++...||--+..||++..+.+ .-..||.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 367888999999999999999888762 2245886
No 9
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=15.61 E-value=1.9e+02 Score=17.30 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhhhHHHHH--HHHHHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI--FSIAEVFAD 68 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt--f~~vE~~~d 68 (73)
.+.+++++.+.+|.+.||. .+-.|.-.|
T Consensus 90 ~a~~~l~~~~~~~~~t~lsaAlt~~~tC~d 119 (150)
T 2cj4_A 90 EAIEALTKGDPKFAEDGMVGSSGDAQECEE 119 (150)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566677677777788988 444444333
No 10
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=13.97 E-value=1e+02 Score=20.04 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChh--hhHHHHH----HHHHHHHHH
Q 035087 38 PVYSTFKAIERKDED--EQQKWLI----FSIAEVFAD 68 (73)
Q Consensus 38 PAYaS~kAies~~~~--d~~qWLt----f~~vE~~~d 68 (73)
|.|++++|+++...- |...|-. ....|..+|
T Consensus 239 p~w~~l~AVkngrVy~vd~~~w~~~~~g~~a~~~~l~ 275 (292)
T 3tef_A 239 DLVKATTAYKNGHIAYLDVNAWYIAISGVKATEQMVA 275 (292)
T ss_dssp HHHHTSHHHHTTCEEECCHHHHTTSTTCHHHHHHHHH
T ss_pred cchhcCCHhHCCCEEEECHHHHhccCchHHHHHHHHH
Confidence 999999999998752 5566753 344444444
Done!