Query 035087
Match_columns 73
No_of_seqs 110 out of 342
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 14:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035087.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035087hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 51.7 5.1 0.00037 18.6 2.0 18 27-44 5-22 (27)
2 d1i5pa3 f.1.3.1 (A:1-263) delt 43.8 3.1 0.00023 27.8 0.7 36 3-39 49-84 (263)
3 d2csba4 a.60.2.4 (A:465-519) T 30.1 9.2 0.00067 20.2 1.1 22 38-59 1-22 (55)
4 d1dlca3 f.1.3.1 (A:61-289) del 25.0 18 0.0013 23.0 2.1 28 19-47 23-50 (229)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 22.8 42 0.0031 18.1 3.2 18 27-44 11-28 (158)
6 d1x91a_ a.29.6.1 (A:) Pectin m 22.7 62 0.0045 18.0 4.1 25 41-65 84-110 (149)
7 d1lgha_ f.3.1.1 (A:) Light-har 22.0 19 0.0014 18.9 1.4 12 48-59 1-12 (56)
8 d1ka8a_ a.4.5.20 (A:) P4 origi 14.0 32 0.0023 20.2 1.2 12 35-46 36-47 (100)
9 d1pi1a_ a.29.7.1 (A:) Mob1a {H 10.7 94 0.0068 19.4 2.8 25 44-68 12-36 (185)
10 d2cj4a1 a.29.6.1 (A:4-150) Inv 9.1 1.6E+02 0.012 16.1 3.7 27 42-68 88-116 (147)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=51.74 E-value=5.1 Score=18.64 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 035087 27 RTACCSVVVALPVYSTFK 44 (73)
Q Consensus 27 ~ll~~~iG~~YPAYaS~k 44 (73)
-++..+.|.-|.||+-+|
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 356678899999998765
No 2
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]}
Probab=43.77 E-value=3.1 Score=27.84 Aligned_cols=36 Identities=19% Similarity=-0.019 Sum_probs=27.0
Q ss_pred hhhhhhhhhhhHhhhhcchhhhHHHHHHHHHHhhhHH
Q 035087 3 FFCHFYSQVGLRLLFCPLGSNIILRTACCSVVVALPV 39 (73)
Q Consensus 3 ~~~~~~g~vgl~lll~~~~s~i~~~ll~~~iG~~YPA 39 (73)
++.++.|.++-.++-.+. +.+++++++.++|++.|.
T Consensus 49 ~~~~ivg~i~s~l~~~l~-~~~~~~ils~l~~~lwP~ 84 (263)
T d1i5pa3 49 YVAPVVGTVSSFLLKKVG-SLIGKRILSELWGIIFPS 84 (263)
T ss_dssp SCCTHHHHHHHHHHHHHT-STTCCCCHHHHHHHHSGG
T ss_pred hHHHHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHcCC
Confidence 566777887777655543 456677999999999995
No 3
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=30.11 E-value=9.2 Score=20.18 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChhhhHHHHH
Q 035087 38 PVYSTFKAIERKDEDEQQKWLI 59 (73)
Q Consensus 38 PAYaS~kAies~~~~d~~qWLt 59 (73)
|.|+|...|..-+.+...+.|.
T Consensus 1 pgyaslisirgidreraerllk 22 (55)
T d2csba4 1 PGYASLISIRGIDRERAERLLK 22 (55)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHH
T ss_pred CCccceeeeecccHHHHHHHHH
Confidence 7899999998888877777666
No 4
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=24.99 E-value=18 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.2
Q ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHh
Q 035087 19 PLGSNIILRTACCSVVVALPVYSTFKAIE 47 (73)
Q Consensus 19 ~~~s~i~~~ll~~~iG~~YPAYaS~kAie 47 (73)
|.+ +.+..+++.++|++.|.-...+++.
T Consensus 23 P~~-g~~~~~~~~i~~~lwP~~~~w~~~~ 50 (229)
T d1dlca3 23 PFG-GALVSFYTNFLNTIWPSEDPWKAFM 50 (229)
T ss_dssp CCH-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 654 4455788999999999754444443
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=22.82 E-value=42 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 035087 27 RTACCSVVVALPVYSTFK 44 (73)
Q Consensus 27 ~ll~~~iG~~YPAYaS~k 44 (73)
-++.-+.++++|+|....
T Consensus 11 aIIgILaaia~P~~~~~~ 28 (158)
T d2pila_ 11 AIVGILAAVALPAYQDYT 28 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367778899999998653
No 6
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.70 E-value=62 Score=17.99 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHhcCChhhhHHHHH--HHHHHH
Q 035087 41 STFKAIERKDEDEQQKWLI--FSIAEV 65 (73)
Q Consensus 41 aS~kAies~~~~d~~qWLt--f~~vE~ 65 (73)
.+.+++++.+.+|-+.||. .+-.+.
T Consensus 84 ~a~~~l~~~~~~~~~~~lsaa~~~~~t 110 (149)
T d1x91a_ 84 EAFEHLASGDGMGMNMKVSAALDGADT 110 (149)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhHhH
Confidence 4577888888888899998 444443
No 7
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=22.05 E-value=19 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.3
Q ss_pred cCChhhhHHHHH
Q 035087 48 RKDEDEQQKWLI 59 (73)
Q Consensus 48 s~~~~d~~qWLt 59 (73)
|..+||++-||.
T Consensus 1 snpkddykiwlv 12 (56)
T d1lgha_ 1 SNPKDDYKIWLV 12 (56)
T ss_dssp CTTGGGGGHHHH
T ss_pred CCCccceEEEEE
Confidence 456888888887
No 8
>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4 [TaxId: 10680]}
Probab=14.05 E-value=32 Score=20.24 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHH
Q 035087 35 VALPVYSTFKAI 46 (73)
Q Consensus 35 ~~YPAYaS~kAi 46 (73)
.+||||-+|-.-
T Consensus 36 yLYhAYLaymea 47 (100)
T d1ka8a_ 36 YLYHAYLAYMEA 47 (100)
T ss_dssp BHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998544
No 9
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.74 E-value=94 Score=19.40 Aligned_cols=25 Identities=12% Similarity=0.493 Sum_probs=17.7
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHH
Q 035087 44 KAIERKDEDEQQKWLIFSIAEVFAD 68 (73)
Q Consensus 44 kAies~~~~d~~qWLtf~~vE~~~d 68 (73)
.+++-|...|...||.-+++|.+-+
T Consensus 12 ~~V~lP~g~d~neWlA~~~~dff~~ 36 (185)
T d1pi1a_ 12 QAVMLPEGEDLNEWIAVNTVDFFNQ 36 (185)
T ss_dssp HHTSCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcCCCCcchhHHHHHHHHHHH
Confidence 4677788889999999555555443
No 10
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=9.13 E-value=1.6e+02 Score=16.08 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=17.6
Q ss_pred HHHHHhcCChhhhHHHHH--HHHHHHHHH
Q 035087 42 TFKAIERKDEDEQQKWLI--FSIAEVFAD 68 (73)
Q Consensus 42 S~kAies~~~~d~~qWLt--f~~vE~~~d 68 (73)
+.+++.+.+.+|-+.|+. .+-.+.--|
T Consensus 88 a~~~l~~~~~~~~~~~lsaa~~~~~tC~d 116 (147)
T d2cj4a1 88 AIEALTKGDPKFAEDGMVGSSGDAQECEE 116 (147)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhHHHHhhH
Confidence 456677777788888988 444444333
Done!