BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035089
MAALPFESKPKDIPIRKLPFPENRRAVVMEPQERKVHALVQHLQLIRNKKMKKQQFKKVP
KKKMKKRHGGRES

High Scoring Gene Products

Symbol, full name Information P value
AT1G06720 protein from Arabidopsis thaliana 2.4e-08
BMS1
Uncharacterized protein 		protein from Gallus gallus 0.00051

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035089
        (73 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2033050 - symbol:AT1G06720 species:3702 "Arabi...   141  2.4e-08   1
UNIPROTKB|F1NH69 - symbol:BMS1 "Uncharacterized protein" ...   101  0.00051   1


>TAIR|locus:2033050 [details] [associations]
            symbol:AT1G06720 species:3702 "Arabidopsis thaliana"
            [GO:0003924 "GTPase activity" evidence=IEA] [GO:0005525 "GTP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006406 "mRNA
            export from nucleus" evidence=RCA] [GO:0006606 "protein import into
            nucleus" evidence=RCA] InterPro:IPR000795 InterPro:IPR012948
            Pfam:PF00009 Pfam:PF08142 SMART:SM00785 GO:GO:0005525 EMBL:CP002684
            GO:GO:0005634 GO:GO:0003924 GO:GO:0006184 GO:GO:0042254 KO:K14569
            OMA:ASYGFEM InterPro:IPR007034 Pfam:PF04950 IPI:IPI00521552
            RefSeq:NP_172157.1 UniGene:At.12092 ProteinModelPortal:F4IDR3
            SMR:F4IDR3 PRIDE:F4IDR3 EnsemblPlants:AT1G06720.1 GeneID:837182
            KEGG:ath:AT1G06720 Uniprot:F4IDR3
        Length = 1147

 Score = 141 (54.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query:     4 LPFESKPKDIPIRKLPFPENRRAVVMEPQERKVHALVQHLQLIRN 48
             LPF SKPK+IP RK P  E++RAV+MEP+ERK H ++Q  QL+++
Sbjct:  1048 LPFMSKPKNIPKRKRPSLEDKRAVIMEPKERKEHTIIQQFQLLQH 1092


>UNIPROTKB|F1NH69 [details] [associations]
            symbol:BMS1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR012948 Pfam:PF08142
            SMART:SM00785 GO:GO:0005634 GO:GO:0042254 OMA:ASYGFEM
            InterPro:IPR007034 Pfam:PF04950 GeneTree:ENSGT00550000074774
            EMBL:AADN02035303 EMBL:AADN02035304 IPI:IPI00604102
            Ensembl:ENSGALT00000004133 Uniprot:F1NH69
        Length = 1304

 Score = 101 (40.6 bits), Expect = 0.00051, P = 0.00051
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query:     3 ALPFESKPKDIPIR-KLPFPENRRAVVMEPQERKVHALVQHLQLIRN 48
             ALPF++KPK++  + K P  + R AV+MEP E+K+ AL+  L  + N
Sbjct:  1193 ALPFKNKPKNLEKKGKTPKDQWRPAVIMEPHEKKISALLNALSTVNN 1239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        55   0.00091  102 3  11 22  0.44    27
                                                     29  0.40    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  375 (40 KB)
  Total size of DFA:  66 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.48u 0.17s 7.65t   Elapsed:  00:00:01
  Total cpu time:  7.48u 0.17s 7.65t   Elapsed:  00:00:01
  Start:  Fri May 10 05:28:15 2013   End:  Fri May 10 05:28:16 2013

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