BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035089
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
          Length = 606

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 11  KDIPIRKLPFPENRRAVVMEPQERKVHALVQHLQ 44
           +DI  R+ P P      ++ P E+ VH+L+   +
Sbjct: 71  EDINKRREPLPSLEAVYLITPSEKSVHSLISDFK 104


>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4
          N-Peptide Complex
 pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4
          N-Peptide Complex
          Length = 594

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 11 KDIPIRKLPFPENRRAVVMEPQERKVHALVQHLQ 44
          +DI  R+ P P      ++ P E+ VH+L+   +
Sbjct: 59 EDINKRREPLPSLEAVYLITPSEKSVHSLISDFK 92


>pdb|1WJ4|A Chain A, Solution Structure Of The Ubx Domain Of Kiaa0794 Protein
          Length = 124

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 18 LPFPENRRAVVMEPQERKVHALVQHLQ 44
          L +P+ +R  +  P++ K+ ALV+H+Q
Sbjct: 48 LRYPDGKREQITLPEQAKLLALVKHVQ 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,574,747
Number of Sequences: 62578
Number of extensions: 36944
Number of successful extensions: 58
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)