Query 035089
Match_columns 73
No_of_seqs 100 out of 173
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1951 GTP-binding protein AA 99.4 2.3E-13 5.1E-18 90.2 6.2 67 2-68 8-76 (115)
2 COG5192 BMS1 GTP-binding prote 94.8 0.046 1E-06 45.9 4.5 59 2-68 987-1045(1077)
3 KOG2635 Medium subunit of clat 58.3 24 0.00052 28.8 4.8 38 27-64 134-171 (512)
4 COG5051 RPL36A Ribosomal prote 35.9 47 0.001 21.5 2.7 27 29-55 50-76 (97)
5 PF04889 Cwf_Cwc_15: Cwf15/Cwc 31.9 1.1E+02 0.0025 22.3 4.5 32 32-63 144-175 (244)
6 KOG2315 Predicted translation 28.8 72 0.0016 26.5 3.3 26 30-55 514-539 (566)
7 PF05388 Carbpep_Y_N: Carboxyp 23.2 50 0.0011 21.6 1.2 13 1-13 78-90 (113)
8 PF15178 TOM_sub5: Mitochondri 21.6 1.3E+02 0.0028 17.3 2.6 22 27-48 9-30 (51)
9 KOG3166 60S ribosomal protein 17.6 60 0.0013 23.7 0.8 26 26-51 165-190 (209)
10 COG4619 ABC-type uncharacteriz 16.4 95 0.0021 22.8 1.5 28 19-46 124-151 (223)
No 1
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.3e-13 Score=90.22 Aligned_cols=67 Identities=39% Similarity=0.554 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccc--cccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 035089 2 AALPFESKPKDIPIRKLPFPENRRA--VVMEPQERKVHALVQHLQLIRNKKMKKQQFKKVPKKKMKKRH 68 (73)
Q Consensus 2 ~~LPFksKpK~~~k~k~~~~~~krA--VV~ep~EkKv~~Lmq~L~Ti~~~K~~Krk~k~~~k~~~~~k~ 68 (73)
++|||+|+|+...+++++.+...|| ||++|+|+|+.++|+++.|++.++..+.++.+..++++|++.
T Consensus 8 k~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~ 76 (115)
T KOG1951|consen 8 KALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREK 76 (115)
T ss_pred HhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999998 999999999999999999999999999999999998888764
No 2
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.046 Score=45.95 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 035089 2 AALPFESKPKDIPIRKLPFPENRRAVVMEPQERKVHALVQHLQLIRNKKMKKQQFKKVPKKKMKKRH 68 (73)
Q Consensus 2 ~~LPFksKpK~~~k~k~~~~~~krAVV~ep~EkKv~~Lmq~L~Ti~~~K~~Krk~k~~~k~~~~~k~ 68 (73)
+.|||+ ++..+++.+|+||..|.|.+....++..-|+..-|..++++..+-.+.+..++
T Consensus 987 ~~lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~ 1045 (1077)
T COG5192 987 SKLPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEE 1045 (1077)
T ss_pred hhCCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 357776 55668999999999999999999999999998888888888776665555544
No 3
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.28 E-value=24 Score=28.78 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=27.0
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 035089 27 VVMEPQERKVHALVQHLQLIRNKKMKKQQFKKVPKKKM 64 (73)
Q Consensus 27 VV~ep~EkKv~~Lmq~L~Ti~~~K~~Krk~k~~~k~~~ 64 (73)
.=|+.||-|++.+|-+=+-+...-..+|+++.-++...
T Consensus 134 ~eMdSHEEKi~e~v~~nke~ea~q~mkrKaKElqr~r~ 171 (512)
T KOG2635|consen 134 LEMDSHEEKIHELVMRNKEREAKQEMKRKAKELQRARK 171 (512)
T ss_pred hccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999887666655555666666544433
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=35.90 E-value=47 Score=21.53 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=20.2
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHH
Q 035089 29 MEPQERKVHALVQHLQLIRNKKMKKQQ 55 (73)
Q Consensus 29 ~ep~EkKv~~Lmq~L~Ti~~~K~~Krk 55 (73)
++|.|+++.+|+..=+..+..|..+.+
T Consensus 50 lsPyErr~i~Lirns~~krArKlakKR 76 (97)
T COG5051 50 LSPYERRVIELIRNSQDKRARKLAKKR 76 (97)
T ss_pred CCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 579999999999877666666655543
No 5
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=31.87 E-value=1.1e+02 Score=22.30 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 035089 32 QERKVHALVQHLQLIRNKKMKKQQFKKVPKKK 63 (73)
Q Consensus 32 ~EkKv~~Lmq~L~Ti~~~K~~Krk~k~~~k~~ 63 (73)
.|=--+.||+-|.-|++++......+..++..
T Consensus 144 deDd~~~Ll~ELekIKkER~ee~~~~e~~~~~ 175 (244)
T PF04889_consen 144 DEDDTAALLRELEKIKKERAEEKARKEEEKAE 175 (244)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999888777766443
No 6
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=28.78 E-value=72 Score=26.53 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHH
Q 035089 30 EPQERKVHALVQHLQLIRNKKMKKQQ 55 (73)
Q Consensus 30 ep~EkKv~~Lmq~L~Ti~~~K~~Krk 55 (73)
+++|+|+.+|+..|+.|..=|.+...
T Consensus 514 ~~~ekKir~L~kkLraIe~LK~r~a~ 539 (566)
T KOG2315|consen 514 SEEEKKIRSLLKKLRAIEALKERMAN 539 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999887776544
No 7
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=23.18 E-value=50 Score=21.57 Aligned_cols=13 Identities=46% Similarity=0.605 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 035089 1 MAALPFESKPKDI 13 (73)
Q Consensus 1 ~~~LPFksKpK~~ 13 (73)
|.+|+|.|+||..
T Consensus 78 ~~~l~~~s~PK~k 90 (113)
T PF05388_consen 78 VSQLKFFSKPKKK 90 (113)
T ss_pred HHhCcccCCCCCC
Confidence 4579999999933
No 8
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=21.63 E-value=1.3e+02 Score=17.35 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.0
Q ss_pred cccCchhhhHHHHHHHHHHHHH
Q 035089 27 VVMEPQERKVHALVQHLQLIRN 48 (73)
Q Consensus 27 VV~ep~EkKv~~Lmq~L~Ti~~ 48 (73)
--|+|+|-|...==+-|.+|+|
T Consensus 9 pk~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 9 PKMDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3578999887766667777765
No 9
>KOG3166 consensus 60S ribosomal protein L7A [Translation, ribosomal structure and biogenesis]
Probab=17.60 E-value=60 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.4
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHHH
Q 035089 26 AVVMEPQERKVHALVQHLQLIRNKKM 51 (73)
Q Consensus 26 AVV~ep~EkKv~~Lmq~L~Ti~~~K~ 51 (73)
|+|.+.++.-.+.|+..++|+++|+=
T Consensus 165 a~v~~edk~~l~kl~e~i~tn~ndry 190 (209)
T KOG3166|consen 165 AFVNSEDKGALAKLVEAIRTNYNDRY 190 (209)
T ss_pred eeechhhHHHHHHHHHHHhcccccch
Confidence 55666778888999999999999953
No 10
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=16.35 E-value=95 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCCccccccccCchhhhHHHHHHHHHHH
Q 035089 19 PFPENRRAVVMEPQERKVHALVQHLQLI 46 (73)
Q Consensus 19 ~~~~~krAVV~ep~EkKv~~Lmq~L~Ti 46 (73)
.+.+++++--||+.|+...+|+..|++.
T Consensus 124 ~~~L~k~it~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 124 DSILTKNITELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred hhhhcchhhhccchHHHHHHHHHHhhcC
Confidence 4557788889999999999999999763
Done!