Query 035089
Match_columns 73
No_of_seqs 100 out of 173
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_A P1C; coiled coil domain 31.6 43 0.0015 16.2 2.4 16 32-47 12-27 (28)
2 3lay_A Zinc resistance-associa 16.8 2.4E+02 0.0082 18.6 4.6 27 30-56 109-135 (175)
3 3dxe_B Amyloid beta A4 protein 15.9 60 0.0021 16.7 1.1 13 28-40 6-18 (35)
4 3aia_A UPF0217 protein MJ1640; 12.5 1E+02 0.0034 21.2 1.8 18 29-46 82-99 (211)
5 3bpj_A Eukaryotic translation 11.0 1.7E+02 0.006 16.8 2.3 22 36-57 56-77 (80)
6 2qmm_A UPF0217 protein AF_1056 10.6 1.3E+02 0.0046 20.3 1.9 19 26-44 74-92 (197)
7 2q97_T Toxofilin, actin, alpha 10.3 1.2E+02 0.0041 19.5 1.5 29 19-47 25-53 (129)
8 2ovc_A Potassium voltage-gated 9.9 2.1E+02 0.0073 14.2 2.2 14 33-46 16-29 (33)
9 2ke4_A CDC42-interacting prote 8.9 3.6E+02 0.012 16.1 4.0 26 31-56 12-37 (98)
10 1v54_L VIIIA, cytochrome C oxi 6.8 1.6E+02 0.0056 15.6 0.8 6 2-7 9-14 (47)
No 1
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.56 E-value=43 Score=16.23 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 035089 32 QERKVHALVQHLQLIR 47 (73)
Q Consensus 32 ~EkKv~~Lmq~L~Ti~ 47 (73)
-|+|+++|-|.+..+.
T Consensus 12 leqkiaalkqkiaslk 27 (28)
T 3ra3_A 12 LEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4788888888886653
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=16.85 E-value=2.4e+02 Score=18.64 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=21.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHH
Q 035089 30 EPQERKVHALVQHLQLIRNKKMKKQQF 56 (73)
Q Consensus 30 ep~EkKv~~Lmq~L~Ti~~~K~~Krk~ 56 (73)
+|+|.+|.+|.+.+..++.+-...|-.
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888876665543
No 3
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=15.90 E-value=60 Score=16.69 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.8
Q ss_pred ccCchhhhHHHHH
Q 035089 28 VMEPQERKVHALV 40 (73)
Q Consensus 28 V~ep~EkKv~~Lm 40 (73)
.++|+|+.+.+|-
T Consensus 6 ~~tpEErh~~~mQ 18 (35)
T 3dxe_B 6 AVAPEERHLSKMQ 18 (35)
T ss_dssp -CCHHHHHHHHHH
T ss_pred ccChhHHHHHHHH
Confidence 5789999988763
No 4
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=12.50 E-value=1e+02 Score=21.24 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=15.3
Q ss_pred cCchhhhHHHHHHHHHHH
Q 035089 29 MEPQERKVHALVQHLQLI 46 (73)
Q Consensus 29 ~ep~EkKv~~Lmq~L~Ti 46 (73)
++|+|+..+.||.++-..
T Consensus 82 v~PdeRs~~~li~kaL~~ 99 (211)
T 3aia_A 82 VSPDERNIAIFIKKALKK 99 (211)
T ss_dssp CCSSHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHh
Confidence 789999999999988443
No 5
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=11.05 E-value=1.7e+02 Score=16.81 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 035089 36 VHALVQHLQLIRNKKMKKQQFK 57 (73)
Q Consensus 36 v~~Lmq~L~Ti~~~K~~Krk~k 57 (73)
+..+--.|.+|.+||++..++.
T Consensus 56 ikkv~s~l~~l~nEK~K~EK~~ 77 (80)
T 3bpj_A 56 LKKITNSLTVLCSEKQKQEKQS 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3355567788899997665543
No 6
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=10.61 E-value=1.3e+02 Score=20.32 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.4
Q ss_pred ccccCchhhhHHHHHHHHH
Q 035089 26 AVVMEPQERKVHALVQHLQ 44 (73)
Q Consensus 26 AVV~ep~EkKv~~Lmq~L~ 44 (73)
..-++|+|+..+.||.++-
T Consensus 74 v~~v~PdeR~~~gli~kaL 92 (197)
T 2qmm_A 74 VRRMSPDERNVAGHIKKAL 92 (197)
T ss_dssp CCSCCSSHHHHHHHHHHHH
T ss_pred EEEcChhHHHHHHHHHHHH
Confidence 3447799999999999873
No 7
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=10.32 E-value=1.2e+02 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=20.9
Q ss_pred CCCccccccccCchhhhHHHHHHHHHHHH
Q 035089 19 PFPENRRAVVMEPQERKVHALVQHLQLIR 47 (73)
Q Consensus 19 ~~~~~krAVV~ep~EkKv~~Lmq~L~Ti~ 47 (73)
.+..+--||+|.|+--+++=|-.-|+|..
T Consensus 25 qtaHQ~Ga~~ltP~QarAAlLdE~lra~q 53 (129)
T 2q97_T 25 QTVHQLGAVALTPEQAKAALLDEILRATQ 53 (129)
T ss_dssp CCSSCSSCCCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHHHh
Confidence 34556679999999888876666665543
No 8
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=9.95 E-value=2.1e+02 Score=14.24 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHH
Q 035089 33 ERKVHALVQHLQLI 46 (73)
Q Consensus 33 EkKv~~Lmq~L~Ti 46 (73)
|++|..+=+.|.+|
T Consensus 16 E~qv~~md~KLd~l 29 (33)
T 2ovc_A 16 EKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777665
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=8.85 E-value=3.6e+02 Score=16.12 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 035089 31 PQERKVHALVQHLQLIRNKKMKKQQF 56 (73)
Q Consensus 31 p~EkKv~~Lmq~L~Ti~~~K~~Krk~ 56 (73)
|-|++...|.++|.-|..+=.+-...
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999888876554444
No 10
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=6.77 E-value=1.6e+02 Score=15.58 Aligned_cols=6 Identities=33% Similarity=0.938 Sum_probs=4.5
Q ss_pred CCCCCC
Q 035089 2 AALPFE 7 (73)
Q Consensus 2 ~~LPFk 7 (73)
++|||.
T Consensus 9 sNLPF~ 14 (47)
T 1v54_L 9 KNIPFS 14 (47)
T ss_dssp TSSSSC
T ss_pred CcCCcC
Confidence 578885
Done!