Query 035089
Match_columns 73
No_of_seqs 100 out of 173
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 14:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v2za_ a.186.1.1 (A:) Circadi 12.1 54 0.0039 19.2 1.8 19 29-49 9-27 (106)
2 d2ce7a1 a.269.1.1 (A:411-603) 12.0 38 0.0028 20.2 1.1 11 28-38 1-11 (193)
3 d1otra_ a.5.2.4 (A:) Protein C 10.7 23 0.0017 17.9 -0.2 23 30-52 2-24 (49)
4 d1u02a_ c.108.1.15 (A:) Trehal 10.5 1E+02 0.0074 17.1 2.8 23 26-50 206-228 (229)
5 d1r8ja1 a.186.1.1 (A:177-282) 9.6 1E+02 0.0074 17.9 2.5 19 29-49 6-24 (106)
6 d2iida2 d.16.1.5 (A:320-432) L 9.5 1.1E+02 0.0078 15.8 2.4 18 31-48 66-83 (113)
7 d1je5a_ b.40.4.7 (A:) gp2.5 {B 9.2 1.4E+02 0.0099 18.2 3.2 31 23-53 38-68 (197)
8 d1ki1b1 a.87.1.1 (B:1229-1438) 9.1 77 0.0056 18.4 1.8 16 28-43 2-17 (210)
9 d2e9xb1 a.278.1.2 (B:62-173) D 9.0 1.6E+02 0.011 16.4 3.2 19 35-53 51-69 (112)
10 d2e1fa1 a.60.8.1 (A:1142-1235) 7.6 1.8E+02 0.013 15.5 3.2 28 27-54 3-30 (94)
No 1
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=12.14 E-value=54 Score=19.18 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=14.2
Q ss_pred cCchhhhHHHHHHHHHHHHHH
Q 035089 29 MEPQERKVHALVQHLQLIRNK 49 (73)
Q Consensus 29 ~ep~EkKv~~Lmq~L~Ti~~~ 49 (73)
|+|+|++. |+++|+.-+.+
T Consensus 9 l~p~Erqe--LL~~Lk~~YR~ 27 (106)
T d1v2za_ 9 MSPADKRK--LLDELRSIYRT 27 (106)
T ss_dssp HCCSCCHH--HHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHHHHHHHH
Confidence 57888875 89999876654
No 2
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.00 E-value=38 Score=20.17 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=7.6
Q ss_pred ccCchhhhHHH
Q 035089 28 VMEPQERKVHA 38 (73)
Q Consensus 28 V~ep~EkKv~~ 38 (73)
||+|+|++..+
T Consensus 1 ~ls~~er~~vA 11 (193)
T d2ce7a1 1 LISPAEKRIIA 11 (193)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 57777777654
No 3
>d1otra_ a.5.2.4 (A:) Protein Cue2 (hypothetical protein YKL090W) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.68 E-value=23 Score=17.85 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=18.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHH
Q 035089 30 EPQERKVHALVQHLQLIRNKKMK 52 (73)
Q Consensus 30 ep~EkKv~~Lmq~L~Ti~~~K~~ 52 (73)
+.||.|..-||.|+-+|.+.|..
T Consensus 2 ddhesklsilmdmfpaisksklq 24 (49)
T d1otra_ 2 DDHESKLSILMDMFPAISKSKLQ 24 (49)
T ss_dssp CSHHHHHHHHHHHCSSSCHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhhhe
Confidence 46899999999998777766653
No 4
>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=10.51 E-value=1e+02 Score=17.09 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=16.3
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHH
Q 035089 26 AVVMEPQERKVHALVQHLQLIRNKK 50 (73)
Q Consensus 26 AVV~ep~EkKv~~Lmq~L~Ti~~~K 50 (73)
-+|.+++| |+.+|..|+-+-..|
T Consensus 206 ~~~~~~~e--v~~~l~~l~~~~~~~ 228 (229)
T d1u02a_ 206 FHVADYIE--MRKILKFIEMLGVQK 228 (229)
T ss_dssp EEESSHHH--HHHHHHHHHHHHHHH
T ss_pred EEcCCHHH--HHHHHHHHHHHHhhc
Confidence 46788888 777777776665544
No 5
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=9.55 E-value=1e+02 Score=17.88 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=13.8
Q ss_pred cCchhhhHHHHHHHHHHHHHH
Q 035089 29 MEPQERKVHALVQHLQLIRNK 49 (73)
Q Consensus 29 ~ep~EkKv~~Lmq~L~Ti~~~ 49 (73)
|+|+|++ .|+++|+.-+.+
T Consensus 6 L~p~Erq--eLL~~Lk~~YR~ 24 (106)
T d1r8ja1 6 LPAYESQ--KLHQAMQTSYRE 24 (106)
T ss_dssp SCHHHHH--HHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHHHHH
Confidence 6788876 688888776644
No 6
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=9.46 E-value=1.1e+02 Score=15.77 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.3
Q ss_pred chhhhHHHHHHHHHHHHH
Q 035089 31 PQERKVHALVQHLQLIRN 48 (73)
Q Consensus 31 p~EkKv~~Lmq~L~Ti~~ 48 (73)
++|..+..+|+.|..|+.
T Consensus 66 ~~e~~~~~~l~~L~~~~~ 83 (113)
T d2iida2 66 DFKDCADIVFNDLSLIHQ 83 (113)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 678888999999999874
No 7
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=9.20 E-value=1.4e+02 Score=18.22 Aligned_cols=31 Identities=3% Similarity=0.168 Sum_probs=25.6
Q ss_pred cccccccCchhhhHHHHHHHHHHHHHHHHHH
Q 035089 23 NRRAVVMEPQERKVHALVQHLQLIRNKKMKK 53 (73)
Q Consensus 23 ~krAVV~ep~EkKv~~Lmq~L~Ti~~~K~~K 53 (73)
=+..+|++.++.++..||..|..+..+-.+.
T Consensus 38 Ykv~L~v~k~d~~a~~~i~~i~~~~e~a~~~ 68 (197)
T d1je5a_ 38 YKVDLTIPNKDPRCQRMVDEIVKCHEEAYAA 68 (197)
T ss_dssp EEEEEEEETTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEccchHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999888775554
No 8
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=77 Score=18.36 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.8
Q ss_pred ccCchhhhHHHHHHHH
Q 035089 28 VMEPQERKVHALVQHL 43 (73)
Q Consensus 28 V~ep~EkKv~~Lmq~L 43 (73)
+|+|.|+|....++-|
T Consensus 2 ~l~~~e~kR~~vi~El 17 (210)
T d1ki1b1 2 MLTPTERKRQGYIHEL 17 (210)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5788888887776655
No 9
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.95 E-value=1.6e+02 Score=16.44 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 035089 35 KVHALVQHLQLIRNKKMKK 53 (73)
Q Consensus 35 Kv~~Lmq~L~Ti~~~K~~K 53 (73)
+|+.|++-|..+|..|...
T Consensus 51 ~vr~Lv~DI~~vR~~Klr~ 69 (112)
T d2e9xb1 51 EIRTLVKDMWDTRIAKLRV 69 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999998865
No 10
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.65 E-value=1.8e+02 Score=15.47 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=18.1
Q ss_pred cccCchhhhHHHHHHHHHHHHHHHHHHH
Q 035089 27 VVMEPQERKVHALVQHLQLIRNKKMKKQ 54 (73)
Q Consensus 27 VV~ep~EkKv~~Lmq~L~Ti~~~K~~Kr 54 (73)
||.....---.+|++.|...+.+.....
T Consensus 3 ~~~~~~~~~~~~L~~~L~~~R~~~A~~~ 30 (94)
T d2e1fa1 3 VISAQEQETQIVLYGKLVEARQKHANKM 30 (94)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHc
Confidence 4333333344578999999988876554
Done!