BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035092
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV+G G+ A +L+ ++GSLE LL+ + +++ R+ ++ D LS +L
Sbjct: 195 GVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLKLSWDL 245
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV+G G+ A +L+ ++GSLE LL+ + +++ R+ ++ D LS +L
Sbjct: 195 GVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLKLSWDL 245
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L++C +V++E T K++++
Sbjct: 158 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L++C +V++E T K++++
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L++C +V++E T K++++
Sbjct: 158 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 25/36 (69%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L++C +V++E T K++++
Sbjct: 160 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 195
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 12 GTGDV--CAVQLITKFGS---LENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAF 66
G G++ C ++ FG L + +QC+ +E R KA+I Q ++SK+ +I ++
Sbjct: 376 GQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435
Query: 67 SS--TC 70
S TC
Sbjct: 436 LSENTC 441
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 12 GTGDV--CAVQLITKFGS---LENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAF 66
G G++ C ++ FG L + +QC+ +E R KA+I Q ++SK+ +I ++
Sbjct: 376 GQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435
Query: 67 SS--TC 70
S TC
Sbjct: 436 LSENTC 441
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQ 33
G+ G G+V A L +FG+++ LL+
Sbjct: 511 GLPGVGEVLARNLARRFGTMDRLLE 535
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L +C +V++E T K++++
Sbjct: 158 ADVNSKKTLREVGSVKALXECALEVKKESTLKSVLS 193
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 14 GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALIT 49
DV + + + + GS++ L +C +V++E T K++++
Sbjct: 167 ADVNSKKTLREVGSVKALXECALEVKKESTLKSVLS 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,810,122
Number of Sequences: 62578
Number of extensions: 50529
Number of successful extensions: 177
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)