BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035092
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIII 64
GV G G+ A++L+ +F S+E LL+ + +V ++ ++ L F DQA++SK L I+
Sbjct: 194 GVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEKLEEFKDQALMSKELATIM 249
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G G+ AV+L+ +FG++EN+L + +++ E+ ++ L + D A+LSK L I
Sbjct: 192 GVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDLALLSKQLAAI 246
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G G+ AV+L+ +FG++EN+L + +++ E+ ++ L + A+LSK L I
Sbjct: 192 GVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMALLSKKLAAI 246
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
G+ G G A QL+ ++G L+ LL+ ++++ + R+ ++ D A LS++LV
Sbjct: 215 GIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIDMARLSRDLV 267
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LITKFGS+EN+ + Q+ + RK L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQNAREAALISWKLI 242
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G+ ++L+ +FGSLENL + V ++ + ++ LI + A LS+ L I
Sbjct: 200 GVTKVGEKTGLKLLQEFGSLENLYENVDSLKASKMKENLIADKEMAFLSQQLATI 254
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G+ ++L+ +FGSLENL + V ++ + + LI + A LS+ L I
Sbjct: 200 GVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKDNLIADKEMAFLSQQLATI 254
>sp|A4SQK3|XNI_AERS4 Protein Xni OS=Aeromonas salmonicida (strain A449) GN=xni PE=3 SV=1
Length = 265
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G G A QL+ ++GSL LL Q E + L + D A+L++ LV
Sbjct: 188 GVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLV 240
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LIT+FGS+EN+ + QV + R+ L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITQFGSVENIFNSLEQVSSLKQRETLQNSKEAALISWQLI 242
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV+G G+ A++L+ ++GSLENLL+ + +V+ E R+ + + LS L
Sbjct: 196 GVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLEL 247
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV+G G+ A++L+ ++GSLENLL+ + +V+ E R+ + + LS L
Sbjct: 196 GVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLRLSLEL 247
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LIT+FGS+EN+ + Q+ + RK L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRKTLQNSREAALISWRLI 242
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LIT+FGS+EN+ + QV + R+ L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLI 242
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LIT+FGS+EN+ + QV + R+ L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLI 242
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G A LIT+FG++EN+ + QV + R+ L + A++S L+
Sbjct: 190 GVPSIGPKTASSLITQFGTVENIFNSLEQVSSIKQRETLQNSKEAALISWQLI 242
>sp|A1SYB8|XNI_PSYIN Protein Xni OS=Psychromonas ingrahamii (strain 37) GN=xni PE=3 SV=1
Length = 262
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQ---AVLSKNLVII 63
GVEG G A+ L+ ++GSL N ++Q E+ K L Q A+L+K LV +
Sbjct: 189 GVEGIGSKGALSLLQQYGSLNN----IFQQAEDSNNKLLTKIKSQQSNAILAKQLVTL 242
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV+G G+ A +LI ++GSLENL Q + QV+ R+ L + LS+ L
Sbjct: 194 GVKGIGEKTAQRLIREWGSLENLFQHLDQVKPS-LREKLQAGMEALALSRKL 244
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G G+ A++L+ ++GS+ENLL+ + +V+ + R+ + + LS +L I
Sbjct: 194 GVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHLSLDLARI 248
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G+ ++L+ + GSLE + + + ++ + ++ LI +QA LSK L I
Sbjct: 197 GVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQAFLSKTLATI 251
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G+ ++L+ + GSLE + + + ++ + ++ LI +QA LSK L I
Sbjct: 197 GVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQAFLSKTLATI 251
>sp|A0KHE3|XNI_AERHH Protein Xni OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC
7966 / NCIB 9240) GN=xni PE=3 SV=2
Length = 267
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLV 61
GV G G A QL+ ++G L +LL Q + + L D+A+L++ LV
Sbjct: 192 GVPGIGPKTATQLLQQYGDLASLLAACQQEDAAKALLKLRQHQDEALLAQRLV 244
>sp|A4VDN2|FEN1_TETTS Flap endonuclease 1 OS=Tetrahymena thermophila (strain SB210)
GN=FEN1 PE=3 SV=1
Length = 384
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 10 VEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRK 45
+EG G V A +LIT+ SLE +L+ + +V ++ T+K
Sbjct: 239 IEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKK 274
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIII 64
GV+G G+ A +L+ ++ SLE + Q + +++ R+ L D A LSK L I+
Sbjct: 192 GVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDMAFLSKRLATIV 246
>sp|A3MY15|FEN_PYRCJ Flap endonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=fen PE=3 SV=1
Length = 346
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQ 37
GV G G A++LI +FGSLE LLQ V +
Sbjct: 244 GVPGVGPQKALKLIWEFGSLEKLLQTVLK 272
>sp|B7UHL4|XNI_ECO27 Protein Xni OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)
GN=xni PE=3 SV=2
Length = 251
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFKSLEGIYENLNAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|O67550|EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3
SV=1
Length = 289
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQC--VYQVEEERTRK 45
G+EG G A+ ++ K+GS+EN+L+ +Q E R +K
Sbjct: 187 GIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAKK 225
>sp|Q3YY58|XNI_SHISS Protein Xni OS=Shigella sonnei (strain Ss046) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q83JW7|XNI_SHIFL Protein Xni OS=Shigella flexneri GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q0T161|XNI_SHIF8 Protein Xni OS=Shigella flexneri serotype 5b (strain 8401) GN=xni
PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q32CC0|XNI_SHIDS Protein Xni OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q31XJ2|XNI_SHIBS Protein Xni OS=Shigella boydii serotype 4 (strain Sb227) GN=xni
PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B2TZD5|XNI_SHIB3 Protein Xni OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q1R7P3|XNI_ECOUT Protein Xni OS=Escherichia coli (strain UTI89 / UPEC) GN=xni PE=3
SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B6I6J6|XNI_ECOSE Protein Xni OS=Escherichia coli (strain SE11) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7N732|XNI_ECOLU Protein Xni OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|P38506|XNI_ECOLI Protein Xni OS=Escherichia coli (strain K12) GN=ygdG PE=1 SV=3
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q8FEF2|XNI_ECOL6 Protein Xni OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|A1AEY5|XNI_ECOK1 Protein Xni OS=Escherichia coli O1:K1 / APEC GN=xni PE=3 SV=3
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|A8A3T3|XNI_ECOHS Protein Xni OS=Escherichia coli O9:H4 (strain HS) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B1XDK7|XNI_ECODH Protein Xni OS=Escherichia coli (strain K12 / DH10B) GN=xni PE=3
SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|C4ZZV3|XNI_ECOBW Protein Xni OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7LXL4|XNI_ECO8A Protein Xni OS=Escherichia coli O8 (strain IAI1) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7MZ94|XNI_ECO81 Protein Xni OS=Escherichia coli O81 (strain ED1a) GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7NVU6|XNI_ECO7I Protein Xni OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=xni
PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q8X6R9|XNI_ECO57 Protein Xni OS=Escherichia coli O157:H7 GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7LEX6|XNI_ECO55 Protein Xni OS=Escherichia coli (strain 55989 / EAEC) GN=xni PE=3
SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|B7MLB9|XNI_ECO45 Protein Xni OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=xni
PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|A7ZQP2|XNI_ECO24 Protein Xni OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=xni PE=3 SV=2
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNL 60
GV G G A QL+ +F SLE + + + V E+ RK L T + A L +++
Sbjct: 181 GVAGIGPKSATQLLVEFQSLEGIYENLDAV-AEKWRKKLETHKEMAFLCRDI 231
>sp|Q9PQ75|EX53_UREPA 5'-3' exonuclease OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=polA PE=3 SV=1
Length = 289
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV+G G A+ L+ K+ ++EN+ + ++ + LI D A LSK L I
Sbjct: 196 GVKGIGPKTAINLLLKYDNIENIYTNLEKIAPS-VKNKLIEHKDMAFLSKKLAAI 249
>sp|C6DAH2|XNI_PECCP Protein Xni OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=xni PE=3 SV=1
Length = 260
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 9 GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63
GV G G A QL+ + GSLE L Q + V E+ RK L + A++S+ + +
Sbjct: 181 GVAGIGPKSAAQLLQQAGSLEALYQQLDGV-PEKWRKKLEQHKEMALVSRQIATL 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,041,583
Number of Sequences: 539616
Number of extensions: 647889
Number of successful extensions: 2105
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 71
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)