Query 035092
Match_columns 73
No_of_seqs 120 out of 1100
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exn_A 5'-exonuclease, 5'-nucl 99.8 7.4E-20 2.5E-24 132.6 5.4 64 5-69 203-267 (290)
2 1bgx_T TAQ DNA polymerase; DNA 99.4 3.1E-16 1.1E-20 125.5 -10.4 64 5-69 191-254 (832)
3 1rxw_A Flap structure-specific 99.1 6.4E-11 2.2E-15 85.7 4.1 32 5-36 235-266 (336)
4 3q8k_A Flap endonuclease 1; he 99.1 2.6E-11 9E-16 88.7 1.2 57 6-69 233-289 (341)
5 2izo_A FEN1, flap structure-sp 99.0 5.9E-11 2E-15 86.4 2.6 54 5-69 233-287 (346)
6 2a1j_A DNA repair endonuclease 99.0 6.1E-10 2.1E-14 64.4 4.0 49 4-52 3-56 (63)
7 1a76_A Flap endonuclease-1 pro 98.9 8.8E-10 3E-14 79.4 3.7 47 5-62 224-272 (326)
8 3qe9_Y Exonuclease 1; exonucle 98.8 1.5E-09 5E-14 79.9 3.0 33 5-37 225-259 (352)
9 1z00_B DNA repair endonuclease 98.8 2.6E-09 9.1E-14 65.2 3.6 48 5-52 18-70 (84)
10 1b43_A Protein (FEN-1); nuclea 98.8 1.2E-09 4.1E-14 79.1 2.2 36 5-40 236-272 (340)
11 1ul1_X Flap endonuclease-1; pr 98.7 1.6E-09 5.3E-14 79.9 -0.1 56 7-69 234-289 (379)
12 3ory_A Flap endonuclease 1; hy 98.7 1.8E-09 6.2E-14 79.7 0.3 33 5-37 250-283 (363)
13 1kft_A UVRC, excinuclease ABC 98.5 7.3E-08 2.5E-12 56.7 3.5 46 5-50 24-75 (78)
14 1z00_A DNA excision repair pro 98.5 2.1E-07 7.2E-12 55.8 5.0 47 6-52 20-72 (89)
15 1x2i_A HEF helicase/nuclease; 98.5 3.9E-07 1.3E-11 52.2 5.9 47 6-52 15-67 (75)
16 2a1j_B DNA excision repair pro 98.4 2.4E-07 8.3E-12 55.9 4.3 46 6-51 33-84 (91)
17 2nrt_A Uvrabc system protein C 98.4 1.6E-07 5.5E-12 66.0 3.8 46 5-50 168-218 (220)
18 3c65_A Uvrabc system protein C 98.1 4E-07 1.4E-11 64.1 0.0 47 5-51 173-224 (226)
19 2bgw_A XPF endonuclease; hydro 98.1 5.9E-06 2E-10 56.1 5.4 45 7-51 164-214 (219)
20 1ixr_A Holliday junction DNA h 98.0 7.1E-06 2.4E-10 56.1 5.1 45 7-51 74-127 (191)
21 1cuk_A RUVA protein; DNA repai 98.0 1.1E-05 3.7E-10 55.6 5.4 45 7-51 75-128 (203)
22 2owo_A DNA ligase; protein-DNA 97.8 3.6E-05 1.2E-09 61.0 6.3 45 9-53 516-566 (671)
23 1dgs_A DNA ligase; AMP complex 97.6 7.4E-05 2.5E-09 59.2 5.9 45 9-53 511-561 (667)
24 3sgi_A DNA ligase; HET: DNA AM 97.6 8.5E-06 2.9E-10 64.1 0.0 49 8-56 532-586 (615)
25 3c1y_A DNA integrity scanning 97.6 6.8E-05 2.3E-09 56.2 4.4 52 4-55 314-371 (377)
26 4glx_A DNA ligase; inhibitor, 97.5 0.00024 8.3E-09 55.5 7.0 56 8-63 515-576 (586)
27 1vq8_Y 50S ribosomal protein L 97.5 1.8E-05 6.1E-10 55.9 0.0 51 5-55 15-72 (241)
28 4gfj_A Topoisomerase V; helix- 97.4 0.00017 6E-09 56.2 5.1 31 8-38 471-502 (685)
29 2ztd_A Holliday junction ATP-d 97.2 0.00047 1.6E-08 47.9 5.1 43 7-49 90-141 (212)
30 2w9m_A Polymerase X; SAXS, DNA 97.1 0.00093 3.2E-08 51.3 5.9 46 7-52 99-152 (578)
31 1s5l_U Photosystem II 12 kDa e 97.0 0.00031 1E-08 46.2 2.4 44 8-53 66-111 (134)
32 2duy_A Competence protein come 96.8 0.00053 1.8E-08 39.5 1.7 19 7-25 29-47 (75)
33 3b0x_A DNA polymerase beta fam 96.6 0.004 1.4E-07 47.7 6.1 44 8-51 96-148 (575)
34 2edu_A Kinesin-like protein KI 96.3 0.0034 1.2E-07 38.0 3.3 18 8-25 43-60 (98)
35 2i5h_A Hypothetical protein AF 96.2 0.0061 2.1E-07 42.5 4.4 31 7-37 134-169 (205)
36 3arc_U Photosystem II 12 kDa e 96.0 0.0023 8E-08 39.6 1.4 43 7-51 28-72 (97)
37 2ziu_A MUS81 protein; helix-ha 95.8 0.0041 1.4E-07 44.0 2.4 34 6-39 238-271 (311)
38 3h7i_A Ribonuclease H, RNAse H 95.5 0.0028 9.7E-08 46.3 0.5 12 5-16 200-211 (305)
39 3maj_A DNA processing chain A; 95.0 0.021 7.1E-07 42.7 3.9 31 8-38 29-59 (382)
40 2fmp_A DNA polymerase beta; nu 94.6 0.04 1.4E-06 39.9 4.3 28 7-34 100-128 (335)
41 2ztd_A Holliday junction ATP-d 94.2 0.027 9.2E-07 38.9 2.6 20 8-27 126-145 (212)
42 1ixr_A Holliday junction DNA h 93.9 0.031 1E-06 37.9 2.4 20 7-26 109-128 (191)
43 2ihm_A POL MU, DNA polymerase 93.5 0.07 2.4E-06 39.0 3.8 25 8-32 105-130 (360)
44 2bcq_A DNA polymerase lambda; 93.3 0.065 2.2E-06 38.9 3.4 26 9-34 100-126 (335)
45 2owo_A DNA ligase; protein-DNA 93.2 0.062 2.1E-06 42.6 3.3 54 2-55 442-504 (671)
46 1x2i_A HEF helicase/nuclease; 92.6 0.054 1.8E-06 30.2 1.7 20 7-26 48-67 (75)
47 1dgs_A DNA ligase; AMP complex 92.4 0.038 1.3E-06 43.8 1.1 53 2-54 437-498 (667)
48 1jms_A Terminal deoxynucleotid 92.4 0.098 3.4E-06 38.6 3.3 26 8-33 124-150 (381)
49 1vdd_A Recombination protein R 92.4 0.031 1.1E-06 39.4 0.6 50 7-63 14-63 (228)
50 1cuk_A RUVA protein; DNA repai 92.4 0.07 2.4E-06 36.4 2.3 20 7-26 110-129 (203)
51 2csb_A Topoisomerase V, TOP61; 91.8 0.21 7.3E-06 37.3 4.5 25 9-33 415-439 (519)
52 3fhg_A Mjogg, N-glycosylase/DN 91.7 0.098 3.4E-06 35.2 2.5 20 8-27 120-139 (207)
53 3n0u_A Probable N-glycosylase/ 91.4 0.09 3.1E-06 36.2 2.0 19 9-27 134-152 (219)
54 3vdp_A Recombination protein R 91.1 0.087 3E-06 36.8 1.7 50 7-63 28-77 (212)
55 1kft_A UVRC, excinuclease ABC 91.0 0.11 3.6E-06 29.8 1.8 20 7-26 58-77 (78)
56 1z00_A DNA excision repair pro 90.8 0.12 3.9E-06 30.3 1.8 20 7-26 53-72 (89)
57 3fhf_A Mjogg, N-glycosylase/DN 90.7 0.13 4.5E-06 35.3 2.3 19 9-27 129-147 (214)
58 3b0x_A DNA polymerase beta fam 90.0 0.14 4.7E-06 39.2 2.1 26 7-32 130-155 (575)
59 1pu6_A 3-methyladenine DNA gly 89.9 0.14 4.9E-06 34.7 2.0 18 8-25 124-141 (218)
60 1kea_A Possible G-T mismatches 89.3 0.17 5.9E-06 34.3 2.0 16 9-24 119-134 (221)
61 4glx_A DNA ligase; inhibitor, 89.1 0.29 9.8E-06 38.3 3.3 53 2-54 442-503 (586)
62 2h56_A DNA-3-methyladenine gly 88.9 0.19 6.5E-06 34.4 2.0 20 9-28 142-162 (233)
63 1kg2_A A/G-specific adenine gl 88.8 0.19 6.6E-06 34.0 2.0 16 9-24 113-128 (225)
64 2a1j_B DNA excision repair pro 88.5 0.2 6.9E-06 29.4 1.7 20 7-26 66-85 (91)
65 2abk_A Endonuclease III; DNA-r 88.5 0.2 6.9E-06 33.6 1.8 16 9-24 113-128 (211)
66 1orn_A Endonuclease III; DNA r 87.9 0.24 8.2E-06 33.8 2.0 20 7-26 115-135 (226)
67 2zix_A Crossover junction endo 87.7 0.041 1.4E-06 39.0 -2.1 31 7-37 235-265 (307)
68 4b21_A Probable DNA-3-methylad 86.7 0.31 1.1E-05 33.5 2.0 22 7-28 152-174 (232)
69 3i0w_A 8-oxoguanine-DNA-glycos 86.7 0.3 1E-05 34.5 2.0 22 7-28 213-235 (290)
70 3s6i_A DNA-3-methyladenine gly 86.6 0.31 1.1E-05 33.3 2.0 22 7-28 141-163 (228)
71 4e9f_A Methyl-CPG-binding doma 86.6 0.3 1E-05 32.1 1.8 18 7-24 106-123 (161)
72 2yg9_A DNA-3-methyladenine gly 86.4 0.33 1.1E-05 33.1 2.0 20 8-27 149-169 (225)
73 1mpg_A ALKA, 3-methyladenine D 86.2 0.34 1.2E-05 33.8 2.0 22 7-28 209-231 (282)
74 2jhn_A ALKA, 3-methyladenine D 85.6 0.37 1.3E-05 33.9 2.0 19 8-26 213-232 (295)
75 2bgw_A XPF endonuclease; hydro 84.2 0.44 1.5E-05 31.8 1.7 20 8-27 197-216 (219)
76 3n5n_X A/G-specific adenine DN 84.1 0.45 1.5E-05 34.0 1.8 15 10-24 134-148 (287)
77 2w9m_A Polymerase X; SAXS, DNA 83.8 0.37 1.3E-05 36.9 1.4 19 7-25 133-151 (578)
78 3fsp_A A/G-specific adenine gl 83.4 0.52 1.8E-05 33.9 2.0 17 8-24 121-137 (369)
79 1ci4_A Protein (barrier-TO-aut 83.1 0.55 1.9E-05 28.8 1.7 17 7-23 20-36 (89)
80 2xhi_A N-glycosylase/DNA lyase 82.6 0.58 2E-05 34.2 2.0 21 8-28 256-277 (360)
81 2kp7_A Crossover junction endo 80.3 0.78 2.7E-05 27.4 1.6 15 9-23 62-76 (87)
82 2dla_A 397AA long hypothetical 79.9 0.89 3E-05 31.7 2.0 21 16-36 10-30 (222)
83 2ihm_A POL MU, DNA polymerase 79.5 3.2 0.00011 30.2 5.0 25 7-31 63-89 (360)
84 1vq8_Y 50S ribosomal protein L 78.1 0.44 1.5E-05 33.3 0.0 24 7-30 50-73 (241)
85 3r8n_M 30S ribosomal protein S 77.2 1.1 3.7E-05 28.3 1.7 22 5-26 16-37 (114)
86 3sgi_A DNA ligase; HET: DNA AM 75.8 0.55 1.9E-05 37.0 0.0 53 2-54 453-520 (615)
87 2bcq_A DNA polymerase lambda; 75.8 1.4 4.8E-05 31.8 2.1 18 7-24 59-76 (335)
88 1jms_A Terminal deoxynucleotid 75.8 4.7 0.00016 29.6 5.0 25 7-31 82-108 (381)
89 3u5c_S 40S ribosomal protein S 75.7 1.9 6.4E-05 28.3 2.6 22 5-26 30-51 (146)
90 2va8_A SSO2462, SKI2-type heli 74.9 6 0.0002 30.0 5.5 41 9-49 661-705 (715)
91 2p6r_A Afuhel308 helicase; pro 74.5 4.8 0.00016 30.6 4.9 45 8-52 635-683 (702)
92 2zj8_A DNA helicase, putative 73.8 1.6 5.5E-05 33.3 2.1 27 7-33 648-675 (720)
93 1u9l_A Transcription elongatio 72.9 11 0.00036 21.5 6.0 51 9-59 10-67 (70)
94 2fmp_A DNA polymerase beta; nu 72.1 1.9 6.7E-05 31.0 2.1 18 7-24 59-76 (335)
95 2xzm_M RPS18E; ribosome, trans 71.6 1.8 6.2E-05 28.6 1.7 21 6-26 31-51 (155)
96 2aq4_A DNA repair protein REV1 70.8 3.7 0.00013 30.1 3.4 28 7-34 243-273 (434)
97 3bqs_A Uncharacterized protein 69.7 2.7 9.4E-05 25.3 2.1 28 5-32 4-32 (93)
98 4ecq_A DNA polymerase ETA; tra 68.5 2 6.8E-05 31.7 1.5 20 7-26 255-274 (435)
99 3iz6_M 40S ribosomal protein S 68.4 2.3 8E-05 28.0 1.7 21 6-26 29-49 (152)
100 2ziu_B Crossover junction endo 67.1 6 0.00021 28.5 3.8 33 7-39 257-289 (341)
101 2di0_A Activating signal coint 66.4 8.8 0.0003 22.3 3.8 26 10-35 24-50 (71)
102 3mab_A Uncharacterized protein 65.5 3.6 0.00012 24.8 2.0 28 5-32 4-32 (93)
103 3j20_O 30S ribosomal protein S 62.7 4.7 0.00016 26.4 2.3 19 8-26 26-44 (148)
104 3c1y_A DNA integrity scanning 61.9 3.3 0.00011 30.9 1.6 18 7-24 349-366 (377)
105 2vqe_M 30S ribosomal protein S 60.8 1.5 5.3E-05 28.0 -0.3 21 6-26 18-38 (126)
106 1t94_A Polymerase (DNA directe 58.6 4.8 0.00017 29.7 2.0 26 7-33 284-311 (459)
107 1wcn_A Transcription elongatio 58.2 20 0.00069 20.1 4.3 32 7-38 9-42 (70)
108 3bzc_A TEX; helix-turn-helix, 57.1 3.8 0.00013 33.0 1.3 25 8-32 511-541 (785)
109 3osn_A DNA polymerase IOTA; ho 56.3 5.7 0.00019 29.2 2.1 26 7-33 236-263 (420)
110 4dez_A POL IV 1, DNA polymeras 55.2 5 0.00017 28.4 1.6 25 7-32 180-206 (356)
111 3lw7_A Adenylate kinase relate 54.6 7.2 0.00025 23.0 2.0 20 7-26 6-25 (179)
112 3bq0_A POL IV, DBH, DNA polyme 53.9 6.5 0.00022 27.8 2.0 19 7-26 181-199 (354)
113 1jx4_A DNA polymerase IV (fami 52.0 6 0.00021 27.9 1.6 19 7-26 180-198 (352)
114 1im4_A DBH; DNA polymerase PAL 52.0 6.2 0.00021 26.5 1.6 19 7-26 186-204 (221)
115 3j20_S 30S ribosomal protein S 51.9 32 0.0011 19.7 5.0 40 15-54 10-57 (67)
116 3f2b_A DNA-directed DNA polyme 49.9 20 0.00068 29.9 4.5 40 8-49 970-1014(1041)
117 1tev_A UMP-CMP kinase; ploop, 49.6 18 0.00062 21.9 3.4 28 6-33 7-39 (196)
118 1b0a_A Protein (fold bifunctio 46.3 11 0.00038 26.9 2.2 20 5-24 254-274 (288)
119 1ly1_A Polynucleotide kinase; 46.2 11 0.00039 22.6 2.0 24 1-24 1-24 (181)
120 3psf_A Transcription elongatio 46.1 10 0.00034 31.6 2.2 18 7-24 719-736 (1030)
121 3im1_A Protein SNU246, PRE-mRN 46.1 44 0.0015 23.2 5.3 27 7-33 159-186 (328)
122 1gm5_A RECG; helicase, replica 45.4 10 0.00035 30.1 2.1 26 5-31 115-142 (780)
123 4gfj_A Topoisomerase V; helix- 44.8 15 0.00052 28.9 2.9 16 9-24 451-466 (685)
124 1pzn_A RAD51, DNA repair and r 44.2 51 0.0018 23.1 5.4 29 5-33 35-64 (349)
125 3mfi_A DNA polymerase ETA; DNA 43.6 9.3 0.00032 29.0 1.5 26 7-32 309-339 (520)
126 1b22_A DNA repair protein RAD5 43.5 8.4 0.00029 23.9 1.1 17 8-24 61-77 (114)
127 2csb_A Topoisomerase V, TOP61; 43.2 24 0.00082 26.3 3.6 28 11-38 360-388 (519)
128 3hjn_A DTMP kinase, thymidylat 43.1 12 0.00042 24.1 1.9 19 7-25 5-23 (197)
129 2c2x_A Methylenetetrahydrofola 42.8 12 0.0004 26.7 1.9 18 7-24 255-273 (281)
130 3bbn_M Ribosomal protein S13; 42.2 1.7 5.8E-05 28.6 -2.4 24 4-27 61-84 (145)
131 3pzp_A DNA polymerase kappa; D 42.1 10 0.00035 28.7 1.6 27 7-34 340-368 (517)
132 1a4i_A Methylenetetrahydrofola 40.8 14 0.00046 26.6 2.0 20 5-24 266-286 (301)
133 3psi_A Transcription elongatio 40.6 14 0.00046 31.4 2.2 18 7-24 716-733 (1219)
134 1nks_A Adenylate kinase; therm 40.3 12 0.00042 22.6 1.5 19 6-24 5-23 (194)
135 3ngx_A Bifunctional protein fo 40.1 16 0.00053 26.0 2.2 19 6-24 245-264 (276)
136 2xzm_V RPS17E; ribosome, trans 39.9 72 0.0025 20.5 5.1 41 15-55 10-58 (130)
137 1zuh_A Shikimate kinase; alpha 39.3 17 0.00059 21.9 2.1 18 7-24 12-29 (168)
138 3gqu_A NOP5P protein; RNA bind 38.5 21 0.00072 23.9 2.5 20 13-32 41-60 (169)
139 3dl0_A Adenylate kinase; phosp 38.4 17 0.00058 22.9 2.0 20 7-26 5-25 (216)
140 2ozb_B U4/U6 small nuclear rib 38.3 19 0.00064 25.3 2.3 20 13-32 150-169 (260)
141 3fb4_A Adenylate kinase; psych 38.2 18 0.00061 22.7 2.1 20 7-26 5-25 (216)
142 1kht_A Adenylate kinase; phosp 38.1 17 0.00057 22.0 1.9 19 6-24 7-25 (192)
143 3kb2_A SPBC2 prophage-derived 37.9 18 0.00061 21.5 1.9 19 6-24 5-23 (173)
144 2pt5_A Shikimate kinase, SK; a 37.9 19 0.00064 21.5 2.1 18 7-24 5-22 (168)
145 2jaq_A Deoxyguanosine kinase; 37.6 17 0.00059 22.2 1.9 19 6-24 4-22 (205)
146 1z3e_B DNA-directed RNA polyme 36.8 24 0.00082 20.2 2.3 18 7-24 43-60 (73)
147 1rq6_A 30S ribosomal protein S 36.6 30 0.001 19.5 2.6 40 15-54 10-57 (62)
148 1e6c_A Shikimate kinase; phosp 36.4 23 0.00077 21.2 2.3 29 5-33 5-38 (173)
149 4f4y_A POL IV, DNA polymerase 35.6 8.8 0.0003 27.5 0.3 17 7-23 181-197 (362)
150 2i1q_A DNA repair and recombin 35.1 85 0.0029 21.1 5.3 28 6-33 4-32 (322)
151 3gqc_A DNA repair protein REV1 35.1 15 0.00053 27.8 1.6 25 7-32 317-343 (504)
152 3u5c_R RP51A, 40S ribosomal pr 34.6 91 0.0031 20.2 5.0 40 15-54 10-57 (136)
153 3icx_A PRE mRNA splicing prote 34.5 25 0.00085 24.8 2.5 20 13-32 136-155 (255)
154 2plr_A DTMP kinase, probable t 33.8 21 0.00073 21.9 1.9 20 5-24 7-26 (213)
155 4a26_A Putative C-1-tetrahydro 33.5 21 0.00071 25.6 2.0 18 7-24 270-288 (300)
156 4ffk_A Superoxide dismutase; o 32.8 38 0.0013 23.3 3.1 22 14-35 110-131 (223)
157 2nnw_A NOP5/NOP56 related prot 31.8 28 0.00097 25.8 2.5 20 13-32 270-289 (376)
158 2hnh_A DNA polymerase III alph 31.5 34 0.0012 27.9 3.1 31 5-35 833-869 (910)
159 1nt2_B Conserved hypothetical 31.4 31 0.001 24.4 2.5 20 13-32 146-165 (258)
160 3twe_A Alpha4H; unknown functi 31.3 47 0.0016 15.7 2.5 12 28-39 3-14 (27)
161 3l07_A Bifunctional protein fo 30.6 28 0.00096 24.7 2.2 19 6-24 256-275 (285)
162 2pbr_A DTMP kinase, thymidylat 29.9 28 0.00095 21.0 1.9 18 7-24 5-22 (195)
163 2c95_A Adenylate kinase 1; tra 29.8 23 0.00078 21.6 1.5 28 6-33 13-45 (196)
164 1qhx_A CPT, protein (chloramph 29.7 31 0.0011 20.7 2.1 20 5-24 6-25 (178)
165 3dc5_A Superoxide dismutase [M 29.1 50 0.0017 22.1 3.2 22 14-35 90-111 (195)
166 2z0h_A DTMP kinase, thymidylat 29.1 29 0.001 21.1 1.9 20 6-25 4-23 (197)
167 1buu_A Protein (mannose-bindin 28.9 47 0.0016 20.5 2.9 11 7-17 2-13 (168)
168 4a5o_A Bifunctional protein fo 28.7 28 0.00096 24.8 2.0 19 6-24 257-276 (286)
169 3rn4_A Superoxide dismutase [M 28.5 46 0.0016 22.6 3.0 22 14-35 108-129 (215)
170 2rhm_A Putative kinase; P-loop 28.2 27 0.00094 21.1 1.7 19 6-24 9-27 (193)
171 1qf9_A UMP/CMP kinase, protein 27.9 28 0.00096 20.9 1.7 27 6-32 10-41 (194)
172 3gmt_A Adenylate kinase; ssgci 27.9 1.1E+02 0.0038 20.6 4.9 32 2-33 8-44 (230)
173 2cdn_A Adenylate kinase; phosp 27.8 31 0.0011 21.4 1.9 19 6-24 24-42 (201)
174 1y6u_A XIS, excisionase from t 27.6 35 0.0012 19.1 1.9 15 11-25 26-40 (70)
175 2bwj_A Adenylate kinase 5; pho 27.2 28 0.00094 21.3 1.5 20 6-25 16-35 (199)
176 2v54_A DTMP kinase, thymidylat 27.1 33 0.0011 21.1 1.9 20 6-25 8-27 (204)
177 2xb4_A Adenylate kinase; ATP-b 26.9 32 0.0011 22.1 1.9 19 6-24 4-22 (223)
178 2e1f_A Werner syndrome ATP-dep 26.8 30 0.001 20.7 1.6 15 7-21 59-73 (103)
179 2vli_A Antibiotic resistance p 26.7 19 0.00066 21.7 0.7 20 6-25 9-28 (183)
180 3p2o_A Bifunctional protein fo 26.7 31 0.001 24.5 1.9 19 6-24 256-275 (285)
181 3iij_A Coilin-interacting nucl 26.7 34 0.0012 20.8 1.9 18 7-24 16-33 (180)
182 1pl4_A Superoxide dismutase [M 26.5 58 0.002 21.8 3.1 22 14-35 90-111 (198)
183 2xmx_A Colicin-M; phosphatase, 26.5 38 0.0013 24.2 2.3 34 6-39 26-59 (271)
184 4hlc_A DTMP kinase, thymidylat 26.3 34 0.0011 22.2 1.9 20 6-25 6-25 (205)
185 3cm0_A Adenylate kinase; ATP-b 25.9 43 0.0015 20.2 2.3 19 6-24 8-26 (186)
186 3gfk_B DNA-directed RNA polyme 25.8 40 0.0014 19.6 2.0 18 7-24 50-67 (79)
187 1vht_A Dephospho-COA kinase; s 25.2 40 0.0014 21.2 2.0 22 5-26 7-28 (218)
188 4h10_A ARYL hydrocarbon recept 25.1 79 0.0027 17.9 3.2 31 41-71 9-39 (73)
189 2wwf_A Thymidilate kinase, put 25.0 31 0.0011 21.3 1.5 19 6-24 14-32 (212)
190 3u5e_R 60S ribosomal protein L 24.6 1.4E+02 0.0049 20.2 4.8 36 24-59 131-166 (189)
191 3k4g_A DNA-directed RNA polyme 24.6 47 0.0016 19.6 2.2 18 7-24 46-63 (86)
192 4fhr_B Flagellar motor switch 24.5 1.1E+02 0.0036 20.6 4.2 35 14-49 86-122 (216)
193 3be4_A Adenylate kinase; malar 24.4 32 0.0011 21.8 1.5 18 7-24 10-27 (217)
194 2cw3_A Pmsod2, iron superoxide 24.4 63 0.0022 23.0 3.1 22 14-35 171-192 (280)
195 1aky_A Adenylate kinase; ATP:A 24.3 46 0.0016 21.0 2.2 19 6-24 8-26 (220)
196 2hpi_A DNA polymerase III alph 24.2 98 0.0033 26.3 4.6 32 4-35 888-925 (1220)
197 1nn5_A Similar to deoxythymidy 24.1 34 0.0012 21.1 1.5 20 5-24 12-31 (215)
198 1y63_A LMAJ004144AAA protein; 24.0 49 0.0017 20.4 2.3 29 6-34 14-48 (184)
199 4edh_A DTMP kinase, thymidylat 23.9 40 0.0014 22.0 1.9 20 6-25 10-29 (213)
200 1zak_A Adenylate kinase; ATP:A 23.8 34 0.0012 21.6 1.5 27 6-32 9-40 (222)
201 1m7g_A Adenylylsulfate kinase; 23.3 43 0.0015 21.1 1.9 19 7-25 30-48 (211)
202 2gpc_A Iron superoxide dismuta 23.1 73 0.0025 21.2 3.1 22 14-35 91-112 (194)
203 1zd8_A GTP:AMP phosphotransfer 23.0 35 0.0012 21.7 1.5 19 6-24 11-29 (227)
204 3a4m_A L-seryl-tRNA(SEC) kinas 23.0 41 0.0014 22.2 1.9 20 6-25 8-27 (260)
205 4h3e_A Fesod, superoxide dismu 23.0 1.1E+02 0.0036 21.2 4.0 24 12-35 131-154 (241)
206 1jr2_A Uroporphyrinogen-III sy 22.9 40 0.0014 22.6 1.8 14 12-26 119-132 (286)
207 2f6r_A COA synthase, bifunctio 22.9 38 0.0013 22.9 1.7 21 6-26 79-99 (281)
208 4eaq_A DTMP kinase, thymidylat 22.8 43 0.0015 21.9 1.9 20 6-25 30-49 (229)
209 1ltq_A Polynucleotide kinase; 22.8 45 0.0015 22.0 2.0 21 4-24 4-24 (301)
210 3hjl_A Flagellar motor switch 22.8 59 0.002 23.4 2.8 35 14-49 199-235 (329)
211 4f92_B U5 small nuclear ribonu 22.7 1.2E+02 0.0041 26.3 5.0 27 7-33 1559-1586(1724)
212 3lio_A Iron superoxide dismuta 22.7 76 0.0026 21.1 3.1 22 14-35 89-110 (192)
213 1e4v_A Adenylate kinase; trans 22.6 37 0.0013 21.4 1.5 21 6-26 4-25 (214)
214 3h1s_A Superoxide dismutase; S 22.5 79 0.0027 21.1 3.2 22 14-35 92-113 (195)
215 2iyv_A Shikimate kinase, SK; t 22.5 50 0.0017 20.0 2.1 19 6-24 6-24 (184)
216 1wlq_C CDT1 protein; coiled-co 22.4 38 0.0013 23.1 1.6 55 18-72 36-94 (201)
217 2ocp_A DGK, deoxyguanosine kin 22.3 38 0.0013 21.8 1.5 20 6-25 6-25 (241)
218 3m5u_A Phosphoserine aminotran 22.2 85 0.0029 22.1 3.5 40 8-48 238-278 (361)
219 3pla_A NOP5, PRE mRNA splicing 22.2 50 0.0017 24.7 2.3 20 13-32 269-288 (388)
220 1my6_A Iron (III) superoxide d 22.1 79 0.0027 21.1 3.1 22 14-35 95-116 (199)
221 3trf_A Shikimate kinase, SK; a 22.0 57 0.002 19.7 2.3 18 7-24 10-27 (185)
222 1ak2_A Adenylate kinase isoenz 22.0 54 0.0018 21.0 2.2 18 7-24 21-38 (233)
223 1dt0_A Superoxide dismutase; p 21.9 82 0.0028 21.1 3.2 22 14-35 89-110 (197)
224 1uer_A SOD, superoxide dismuta 21.8 81 0.0028 21.0 3.1 22 14-35 90-111 (191)
225 2nyb_A Superoxide dismutase [F 21.6 82 0.0028 20.9 3.1 22 14-35 89-110 (192)
226 3t61_A Gluconokinase; PSI-biol 21.6 48 0.0017 20.5 1.9 20 6-25 22-41 (202)
227 2if2_A Dephospho-COA kinase; a 21.4 44 0.0015 20.6 1.7 20 6-25 5-24 (204)
228 1xre_A SODA-2, superoxide dism 21.3 82 0.0028 21.4 3.1 22 14-35 108-129 (217)
229 1ukz_A Uridylate kinase; trans 20.9 51 0.0017 20.3 1.9 27 7-33 20-51 (203)
230 1jjv_A Dephospho-COA kinase; P 20.9 51 0.0017 20.4 1.9 22 5-26 5-26 (206)
231 2nsz_A Programmed cell death p 20.8 1.4E+02 0.0049 18.0 4.0 25 15-39 7-34 (129)
232 3tqj_A Superoxide dismutase [F 20.7 87 0.003 21.3 3.1 22 14-35 90-111 (210)
233 3js4_A Superoxide dismutase; n 20.2 90 0.0031 21.4 3.1 22 14-35 117-138 (227)
No 1
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.79 E-value=7.4e-20 Score=132.61 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=61.1
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHHhhhh-hhHHHHHHHHHhHHHHHHHHHhhhHhhcCcc
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQCVYQV-EEERTRKALITFADQAVLSKNLVIIIAFSST 69 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l-~~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~ 69 (73)
-|||||||||||||.+||++|||+|+|+++++++ ++ +++++|.++.+++++|++|++|++++|-
T Consensus 203 DniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~-~~~~~L~~~~~~~~ls~~L~~i~~d~~~ 267 (290)
T 1exn_A 203 DNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQ-KYIQNLNASEELLFRNLILVDLPTYCVD 267 (290)
T ss_dssp GTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCC-HHHHHHHTCHHHHHHHHHHHCHHHHHHH
T ss_pred CCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccH-HHHHHHHHhHHHHHHHHHhceeeeCCCC
Confidence 5899999999999999999999999999999999 77 8999999999999999999999999873
No 2
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.40 E-value=3.1e-16 Score=125.45 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=61.0
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhHhhcCcc
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAFSST 69 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~ 69 (73)
.|||||||||||||.+||++|||+|+++++++++++ +++++|.++.|++++|++|++|++++|-
T Consensus 191 DnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~-~~~~~l~~~~~~a~ls~~L~~i~~d~~~ 254 (832)
T 1bgx_T 191 DNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKP-AIREKILAHMDDLKLSWDLAKVRTDLPL 254 (832)
T ss_dssp SCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCT-TTSHHHHSSCSSTTSGGGSSCCCSCCCC
T ss_pred ccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhCh-HHHHHHHHhHHHHHHHHHHHhhccCCCC
Confidence 589999999999999999999999999999999987 7899999999999999999999999884
No 3
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.08 E-value=6.4e-11 Score=85.70 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=30.4
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHHhh
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQCVY 36 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~ 36 (73)
-|+|||||||||||.+||++|||+|+++++++
T Consensus 235 D~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~ 266 (336)
T 1rxw_A 235 DYNEGVKGVGVKKALNYIKTYGDIFRALKALK 266 (336)
T ss_dssp TTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC
Confidence 48999999999999999999999999999976
No 4
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.06 E-value=2.6e-11 Score=88.72 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=44.2
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhHhhcCcc
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAFSST 69 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~ 69 (73)
+.|||||||||||.+||++|||+|++++++++++. ++.+.+. +. .+++|. ++++++.
T Consensus 233 ~~~gipGiG~KtA~kll~~~gsle~i~~~~~~~k~-~~~~~~~-~~----~~r~l~-l~~~V~~ 289 (341)
T 3q8k_A 233 YCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKY-PVPENWL-HK----EAHQLF-LEPEVLD 289 (341)
T ss_dssp SSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCTTTS-CCCTTCC-HH----HHHHHH-HSCCCCC
T ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcCC-CCCcccc-hH----HHHHHh-CCCCCCC
Confidence 57999999999999999999999999999887754 3333333 22 277777 7777653
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.05 E-value=5.9e-11 Score=86.40 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=33.4
Q ss_pred cccC-CCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhHhhcCcc
Q 035092 5 FINA-GVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAFSST 69 (73)
Q Consensus 5 ~~I~-gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~ 69 (73)
-|+| ||||||||||.+||++|||+++++++++++ ++.+.+ + ++++.++.++.|.
T Consensus 233 D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~---k~~~~~----~----~~~l~~i~~~~~v 287 (346)
T 2izo_A 233 DYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEIS---KKDINF----N----IDEIRGLFLNPQV 287 (346)
T ss_dssp SSSTTCSTTCCHHHHHHHHHHSSCC----------------------------CTTHHHHHHSCCC
T ss_pred CCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhc---cCCCCc----c----HHHHHHHhhCCCC
Confidence 4899 999999999999999999999999998776 223322 2 5888998887763
No 6
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=98.96 E-value=6.1e-10 Score=64.38 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=37.7
Q ss_pred ccccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhhh---hHHH-HHHHHHhHH
Q 035092 4 YFINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQVE---EERT-RKALITFAD 52 (73)
Q Consensus 4 ~~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l~---~~k~-~~~L~~~~e 52 (73)
.+.+.+|||||||++..||++|||+++|.++ .+++. +.+. +++|.++..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 3556789999999999999999999999854 56653 3345 777766553
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=98.89 E-value=8.8e-10 Score=79.45 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=40.3
Q ss_pred cccC-CCCcccHHHHHHHHHHhCCHHHHH-HHhhhhhhHHHHHHHHHhHHHHHHHHHhhh
Q 035092 5 FINA-GVEGTGDVCAVQLITKFGSLENLL-QCVYQVEEERTRKALITFADQAVLSKNLVI 62 (73)
Q Consensus 5 ~~I~-gVpGIG~KtA~~LL~~fgsle~i~-~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~ 62 (73)
.|+| ||||||||||.+|+++ ||+++++ +++++++ +.+ ++++|++|++
T Consensus 224 D~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~~~--~~~--------~~~l~~~l~~ 272 (326)
T 1a76_A 224 DYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEYYD--EIK--------RIFKEPKVTD 272 (326)
T ss_dssp TTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTTHH--HHH--------HHHHSCCCCC
T ss_pred CCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhHHH--HHH--------HHHhCCCCCC
Confidence 4899 9999999999999999 9999999 9988763 222 7888888886
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.82 E-value=1.5e-09 Score=79.85 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=30.3
Q ss_pred cccCCCCcccHHHHHHHHHHh--CCHHHHHHHhhh
Q 035092 5 FINAGVEGTGDVCAVQLITKF--GSLENLLQCVYQ 37 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~f--gsle~i~~~~~~ 37 (73)
.|+|||||||+|||.+|+++| +|++++++++++
T Consensus 225 D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~ 259 (352)
T 3qe9_Y 225 DYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259 (352)
T ss_dssp SSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHH
T ss_pred CCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 489999999999999999999 799999988764
No 9
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=98.82 E-value=2.6e-09 Score=65.18 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=37.6
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhhh---hHHH-HHHHHHhHH
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQVE---EERT-RKALITFAD 52 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l~---~~k~-~~~L~~~~e 52 (73)
+.+..|||||||++..||++|||+++|.++ .++|. +.+. +++|.+++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 345689999999999999999999999864 56664 2345 777777653
No 10
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=98.81 E-value=1.2e-09 Score=79.13 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=33.5
Q ss_pred cccC-CCCcccHHHHHHHHHHhCCHHHHHHHhhhhhh
Q 035092 5 FINA-GVEGTGDVCAVQLITKFGSLENLLQCVYQVEE 40 (73)
Q Consensus 5 ~~I~-gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~ 40 (73)
-|+| ||||||||||.+|+++|||+++++++.++++.
T Consensus 236 Dy~p~gv~GiG~ktA~kli~~~gsle~il~~~~~~~~ 272 (340)
T 1b43_A 236 DYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQSDVDL 272 (340)
T ss_dssp TTSTTCSTTCCHHHHHHHHHTCSSGGGGTGGGCSSCH
T ss_pred CCCCCCCCCccHHHHHHHHHHcCCHHHHHcCCCCccH
Confidence 4899 99999999999999999999999999888864
No 11
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=98.70 E-value=1.6e-09 Score=79.92 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhHhhcCcc
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVIIIAFSST 69 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~ 69 (73)
.+||||||||||.+||++|||+++|++++++++. ++.+.+... .+++|. ++++++.
T Consensus 234 ~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~k~-~~~~~~~~~-----~ar~l~-l~~~v~~ 289 (379)
T 1ul1_X 234 CESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKY-PVPENWLHK-----EAHQLF-LEPEVLD 289 (379)
T ss_dssp SCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCTTS-CCCSSCCHH-----HHHHHH-HSCCCCC
T ss_pred CCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhhcc-cCCCcCCHH-----HHHHHh-cCCeeCC
Confidence 4789999999999999999999999999887644 233333211 388888 8888774
No 12
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=98.70 E-value=1.8e-09 Score=79.69 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=30.1
Q ss_pred cccC-CCCcccHHHHHHHHHHhCCHHHHHHHhhh
Q 035092 5 FINA-GVEGTGDVCAVQLITKFGSLENLLQCVYQ 37 (73)
Q Consensus 5 ~~I~-gVpGIG~KtA~~LL~~fgsle~i~~~~~~ 37 (73)
.|+| ||||||||||.+||++|||+|+++++++.
T Consensus 250 Dy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~ 283 (363)
T 3ory_A 250 DYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK 283 (363)
T ss_dssp TTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC
T ss_pred CCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc
Confidence 3679 99999999999999999999999988763
No 13
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=98.52 E-value=7.3e-08 Score=56.67 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=35.1
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---hh--HHHHHHHHHh
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQV---EE--ERTRKALITF 50 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~~--~k~~~~L~~~ 50 (73)
+.+.+||||||++|.+|++.|++++++.++ .+++ ++ ++.++.|.++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 446799999999999999999999999864 4444 32 4566666654
No 14
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=98.48 E-value=2.1e-07 Score=55.77 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=36.1
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhh---hhh--HHHHHHHHHhHH
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQC-VYQ---VEE--ERTRKALITFAD 52 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~---l~~--~k~~~~L~~~~e 52 (73)
-+.+|||||+++|..|++.|+|++++.++ .++ +++ ++.++.|.+..+
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999999854 344 333 566777766554
No 15
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=98.48 E-value=3.9e-07 Score=52.16 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=35.9
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---hh--HHHHHHHHHhHH
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQC-VYQV---EE--ERTRKALITFAD 52 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~~--~k~~~~L~~~~e 52 (73)
-+.+|||||+++|..|++.|+|++++..+ .+++ ++ ++.++.|.+..+
T Consensus 15 ~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999999864 3443 33 566777766543
No 16
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=98.42 E-value=2.4e-07 Score=55.89 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=34.9
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhh---hhh--HHHHHHHHHhH
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQC-VYQ---VEE--ERTRKALITFA 51 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~---l~~--~k~~~~L~~~~ 51 (73)
-+.+|||||+++|..|++.|++++++.++ .++ +++ ++.++.|.+..
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999853 343 332 45666776654
No 17
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=98.42 E-value=1.6e-07 Score=65.97 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=35.7
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhhhh---H-HHHHHHHHh
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQVEE---E-RTRKALITF 50 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l~~---~-k~~~~L~~~ 50 (73)
|-+.|||||||++|+.|+++|||++++.++ .+++.. + ++++.|.++
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 456899999999999999999999999854 555543 4 566666553
No 18
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=98.10 E-value=4e-07 Score=64.09 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred cccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhhh----hHHHHHHHHHhH
Q 035092 5 FINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQVE----EERTRKALITFA 51 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l~----~~k~~~~L~~~~ 51 (73)
+-+.+||||||++|..|+++|||++++.++ .+++. ++++++.|.++.
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 556899999999999999999999999854 44442 246666666544
No 19
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=98.07 E-value=5.9e-06 Score=56.09 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=35.1
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHH-hhh---hh--hHHHHHHHHHhH
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQC-VYQ---VE--EERTRKALITFA 51 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~---l~--~~k~~~~L~~~~ 51 (73)
+.+|||||+++|..|+++|||++++.++ .++ ++ +++.+++|.++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999743 343 43 367777777654
No 20
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=98.02 E-value=7.1e-06 Score=56.11 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.2
Q ss_pred cCCCCcccHHHHHHHHHHhCC---HHHHHHH-hh---hhhh--HHHHHHHHHhH
Q 035092 7 NAGVEGTGDVCAVQLITKFGS---LENLLQC-VY---QVEE--ERTRKALITFA 51 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgs---le~i~~~-~~---~l~~--~k~~~~L~~~~ 51 (73)
+..|||||||+|..||+.|++ .+.|.++ .+ ++++ +|.+++|....
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 457999999999999999999 7777742 34 4444 67777776544
No 21
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=97.98 E-value=1.1e-05 Score=55.55 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=34.6
Q ss_pred cCCCCcccHHHHHHHHHHhCC---HHHHHHH-hh---hhhh--HHHHHHHHHhH
Q 035092 7 NAGVEGTGDVCAVQLITKFGS---LENLLQC-VY---QVEE--ERTRKALITFA 51 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgs---le~i~~~-~~---~l~~--~k~~~~L~~~~ 51 (73)
+..|||||||+|..||+.|++ ++.|.++ .+ ++++ +|.+++|....
T Consensus 75 L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 456999999999999999999 8888743 44 4444 67788776644
No 22
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.81 E-value=3.6e-05 Score=60.98 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---hh--HHHHHHHHHhHHH
Q 035092 9 GVEGTGDVCAVQLITKFGSLENLLQC-VYQV---EE--ERTRKALITFADQ 53 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~~--~k~~~~L~~~~e~ 53 (73)
||||||+++|+.|+++|+|++++.++ .+++ ++ +++++.|.+++..
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~ 566 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE 566 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999853 4444 33 7889999887643
No 23
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.65 E-value=7.4e-05 Score=59.18 Aligned_cols=45 Identities=33% Similarity=0.632 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---hh--HHHHHHHHHhHHH
Q 035092 9 GVEGTGDVCAVQLITKFGSLENLLQC-VYQV---EE--ERTRKALITFADQ 53 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~~--~k~~~~L~~~~e~ 53 (73)
||||||+++|+.|+++|+|++++.++ .+++ ++ +++++.|.+++..
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~A~sI~~ff~~ 561 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKD 561 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHHC
T ss_pred ccCCccHHHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHHHHHHHHHHhh
Confidence 99999999999999999999999743 3444 33 7888899887754
No 24
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=97.61 E-value=8.5e-06 Score=64.11 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---h--hHHHHHHHHHhHHHHHH
Q 035092 8 AGVEGTGDVCAVQLITKFGSLENLLQC-VYQV---E--EERTRKALITFADQAVL 56 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~--~~k~~~~L~~~~e~a~l 56 (73)
-||||||+++|+.|+++|+|++++.++ .+++ + ++++++.|.+++.....
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n 586 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWH 586 (615)
T ss_dssp -------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHH
Confidence 489999999999999999999999854 4544 3 26788888887765433
No 25
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=97.57 E-value=6.8e-05 Score=56.18 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=41.1
Q ss_pred ccccCCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---h--hHHHHHHHHHhHHHHH
Q 035092 4 YFINAGVEGTGDVCAVQLITKFGSLENLLQC-VYQV---E--EERTRKALITFADQAV 55 (73)
Q Consensus 4 ~~~I~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~--~~k~~~~L~~~~e~a~ 55 (73)
|..+..||+||++.|..|+++|||+++++++ .+++ . +++.+++|.+....+.
T Consensus 314 yRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~~ 371 (377)
T 3c1y_A 314 YRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLK 371 (377)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHHh
Confidence 4455679999999999999999999999954 5555 3 3778888888766543
No 26
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.51 E-value=0.00024 Score=55.50 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=42.3
Q ss_pred CCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh---hh--HHHHHHHHHhHHHHHHHHHhhhH
Q 035092 8 AGVEGTGDVCAVQLITKFGSLENLLQC-VYQV---EE--ERTRKALITFADQAVLSKNLVII 63 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l---~~--~k~~~~L~~~~e~a~ls~~L~~L 63 (73)
-|||+||+++|+.|.++|+|++++.++ .+++ ++ +++++.|.+++..-..-.-+..|
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~n~~~i~~L 576 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISEL 576 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHHHHHHHHHH
Confidence 489999999999999999999999853 4444 43 78999999987654433333333
No 27
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=97.45 E-value=1.8e-05 Score=55.88 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred cccCCCCcccHHHHHHHHHH-hCCHHHHHHH-hhhh---hh--HHHHHHHHHhHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK-FGSLENLLQC-VYQV---EE--ERTRKALITFADQAV 55 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~-fgsle~i~~~-~~~l---~~--~k~~~~L~~~~e~a~ 55 (73)
+-+..|||||||+|..|++. |+|+++|.++ .++| ++ ++.+++|.+..+...
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~ 72 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLE 72 (241)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34678999999999999998 9999999743 3444 33 566677766554433
No 28
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=97.42 E-value=0.00017 Score=56.17 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCCcccHHHHHHHHHHhCCHHHHHHH-hhhh
Q 035092 8 AGVEGTGDVCAVQLITKFGSLENLLQC-VYQV 38 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgsle~i~~~-~~~l 38 (73)
-.||||||.+|..||++|||++.++.+ .+++
T Consensus 471 tAIaGIGp~tAeRLLEkFGSVe~Vm~AteDEL 502 (685)
T 4gfj_A 471 ISIRGIDRERAERLLKKYGGYSKVREAGVEEL 502 (685)
T ss_dssp HTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHH
T ss_pred eccCCCCHHHHHHHHHHhcCHHHHHhCCHHHH
Confidence 358999999999999999999999965 5666
No 29
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=97.23 E-value=0.00047 Score=47.88 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=29.5
Q ss_pred cCCCCcccHHHHHHHHHHhCC---HHHHHH----Hhhhhhh--HHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFGS---LENLLQ----CVYQVEE--ERTRKALIT 49 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgs---le~i~~----~~~~l~~--~k~~~~L~~ 49 (73)
+-.|+|||||+|..+|+.|+. ...|.+ .+.++++ +|.+++|..
T Consensus 90 L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 90 LLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred hcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 346999999999999999987 333442 2344554 566666654
No 30
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00093 Score=51.32 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=34.3
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHHHh-----hhhhh--HHHHHHHHHhHH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQCV-----YQVEE--ERTRKALITFAD 52 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~~~-----~~l~~--~k~~~~L~~~~e 52 (73)
+-.|||||||+|.+|++. |.|++++..++ ..+++ +|.+++|....+
T Consensus 99 L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~ 152 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVV 152 (578)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHH
Confidence 358999999999999997 79999998753 22443 677777754433
No 31
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=97.03 E-value=0.00031 Score=46.25 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCCcccHHHHHHHHHH--hCCHHHHHHHhhhhhhHHHHHHHHHhHHH
Q 035092 8 AGVEGTGDVCAVQLITK--FGSLENLLQCVYQVEEERTRKALITFADQ 53 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~--fgsle~i~~~~~~l~~~k~~~~L~~~~e~ 53 (73)
..+|||||++|.+++++ |.|+|++++ +..+. ++..+.+..+++.
T Consensus 66 ~~LpGiGp~~A~~II~~GpF~svedL~~-V~GIg-~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 66 IQYRGLYPTLAKLIVKNAPYESVEDVLN-IPGLT-ERQKQILRENLEH 111 (134)
T ss_dssp GGSTTCTHHHHHHHHHTCCCSSGGGGGG-CTTCC-HHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHcCCCCCHHHHHh-CCCCC-HHHHHHHHHhhcc
Confidence 46899999999999986 888877742 23332 3555666666654
No 32
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.76 E-value=0.00053 Score=39.55 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=17.0
Q ss_pred cCCCCcccHHHHHHHHHHh
Q 035092 7 NAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f 25 (73)
+..+||||+++|.+|++.+
T Consensus 29 L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTC
T ss_pred HHhCCCCCHHHHHHHHHHc
Confidence 4578999999999999986
No 33
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.62 E-value=0.004 Score=47.66 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCCCcccHHHHHHHHHH--hCCHHHHHHHh-----hhhhh--HHHHHHHHHhH
Q 035092 8 AGVEGTGDVCAVQLITK--FGSLENLLQCV-----YQVEE--ERTRKALITFA 51 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~--fgsle~i~~~~-----~~l~~--~k~~~~L~~~~ 51 (73)
-.|+|||||+|.++++. +.|++++..++ ..+++ +|.+++|....
T Consensus 96 ~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l 148 (575)
T 3b0x_A 96 MEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGL 148 (575)
T ss_dssp HTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHH
Confidence 47999999999999997 69999998653 23343 56777765433
No 34
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=96.31 E-value=0.0034 Score=37.96 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=16.3
Q ss_pred CCCCcccHHHHHHHHHHh
Q 035092 8 AGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~f 25 (73)
..|||||+++|.+|++.+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 468999999999999987
No 35
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.17 E-value=0.0061 Score=42.49 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=26.1
Q ss_pred cCCCCcccHHHHHHHHHH-----hCCHHHHHHHhhh
Q 035092 7 NAGVEGTGDVCAVQLITK-----FGSLENLLQCVYQ 37 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-----fgsle~i~~~~~~ 37 (73)
+..+|||||++|.++++. |.|++++.+.+.-
T Consensus 134 L~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKG 169 (205)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTT
T ss_pred HhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCC
Confidence 457999999999999986 9999999775554
No 36
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.98 E-value=0.0023 Score=39.58 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=26.9
Q ss_pred cCCCCcccHHHHHHHHHH--hCCHHHHHHHhhhhhhHHHHHHHHHhH
Q 035092 7 NAGVEGTGDVCAVQLITK--FGSLENLLQCVYQVEEERTRKALITFA 51 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~--fgsle~i~~~~~~l~~~k~~~~L~~~~ 51 (73)
+..+|||||++|.++++. |.|++++. .+..+. ++..+++..+.
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~-~V~Gig-~~~~e~l~~~l 72 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVL-NIPGLT-ERQKQILRENL 72 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGG-GCTTCC-HHHHHHHHHTG
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHH-hccCCC-HHHHHHHHHHh
Confidence 346899999999999985 66666553 112222 34445555443
No 37
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=95.84 E-value=0.0041 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=29.5
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhh
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQCVYQVE 39 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~ 39 (73)
-+-.||||+++.|..|+++|+|+..++++.++..
T Consensus 238 mL~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~ 271 (311)
T 2ziu_A 238 QLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCS 271 (311)
T ss_dssp HHTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCS
T ss_pred HHHhccCCCHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 3567999999999999999999999998876643
No 38
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=95.50 E-value=0.0028 Score=46.29 Aligned_cols=12 Identities=25% Similarity=-0.009 Sum_probs=11.1
Q ss_pred cccCCCCcccHH
Q 035092 5 FINAGVEGTGDV 16 (73)
Q Consensus 5 ~~I~gVpGIG~K 16 (73)
-||||||||||+
T Consensus 200 DNIPGVpGIG~~ 211 (305)
T 3h7i_A 200 DNVASVKVRSDF 211 (305)
T ss_dssp GTBCCTTSCTTH
T ss_pred cCCCCCCcCCcc
Confidence 599999999997
No 39
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=95.02 E-value=0.021 Score=42.66 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCCCcccHHHHHHHHHHhCCHHHHHHHhhhh
Q 035092 8 AGVEGTGDVCAVQLITKFGSLENLLQCVYQV 38 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l 38 (73)
--+||||+++..+|+++|||.+++++...++
T Consensus 29 ~~~~gvG~~~~~~Ll~~fgs~~~~~~a~~~~ 59 (382)
T 3maj_A 29 IRAENVGPRTFRSLINHFGSARAALERLPEL 59 (382)
T ss_dssp HTSTTCCHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHcCHHH
Confidence 3589999999999999999999999765443
No 40
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.59 E-value=0.04 Score=39.93 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.8
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQC 34 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~~ 34 (73)
.-.|||||||+|.+|.++ +.|++++.++
T Consensus 100 l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 358999999999999876 3688888763
No 41
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=94.18 E-value=0.027 Score=38.93 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.3
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q 035092 8 AGVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgs 27 (73)
-.|||||+|+|.+++.++.+
T Consensus 126 ~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 126 TRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HTSTTCCHHHHHHHHHHHTT
T ss_pred hhCCCCCHHHHHHHHHHHHH
Confidence 47999999999999988743
No 42
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=93.93 E-value=0.031 Score=37.92 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.7
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..|||||+|+|.+++.++.
T Consensus 109 L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 109 LTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HTTSTTCCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHH
Confidence 46899999999999998883
No 43
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=93.48 E-value=0.07 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.9
Q ss_pred CCCCcccHHHHHHHHHH-hCCHHHHH
Q 035092 8 AGVEGTGDVCAVQLITK-FGSLENLL 32 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fgsle~i~ 32 (73)
-+|||||||+|.+|.++ +.|++++.
T Consensus 105 ~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred hCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 47999999999999876 36788876
No 44
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.35 E-value=0.065 Score=38.85 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCCcccHHHHHHHHHH-hCCHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK-FGSLENLLQC 34 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~-fgsle~i~~~ 34 (73)
.|||||||+|.+|.++ +.|++++.++
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 8999999999999875 4788888754
No 45
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=93.16 E-value=0.062 Score=42.62 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=38.1
Q ss_pred cccc-ccCCCCcccHHHHHHHHHHh--CCHHHHHH----Hhhhhhh--HHHHHHHHHhHHHHH
Q 035092 2 HFYF-INAGVEGTGDVCAVQLITKF--GSLENLLQ----CVYQVEE--ERTRKALITFADQAV 55 (73)
Q Consensus 2 ~~~~-~I~gVpGIG~KtA~~LL~~f--gsle~i~~----~~~~l~~--~k~~~~L~~~~e~a~ 55 (73)
||.| ..-+|+|+|||++..|.++- .++.+++. .+..+++ +|-+++|.+..+.++
T Consensus 442 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk 504 (671)
T 2owo_A 442 HFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAK 504 (671)
T ss_dssp HHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHHHHHh
Confidence 6665 45689999999999999985 57777763 2334443 567778877766543
No 46
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.60 E-value=0.054 Score=30.16 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.1
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..|||||+++|..|...|.
T Consensus 48 L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 48 LMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHh
Confidence 45799999999999988774
No 47
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=92.40 E-value=0.038 Score=43.82 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=35.8
Q ss_pred ccccc-cCCCCcccHHHHHHHHHHhC--CHHHHHHH----hhhhhh--HHHHHHHHHhHHHH
Q 035092 2 HFYFI-NAGVEGTGDVCAVQLITKFG--SLENLLQC----VYQVEE--ERTRKALITFADQA 54 (73)
Q Consensus 2 ~~~~~-I~gVpGIG~KtA~~LL~~fg--sle~i~~~----~~~l~~--~k~~~~L~~~~e~a 54 (73)
||.|- .-+|+|+|||++..|.++++ ++.+++.. +.++++ +|-+++|.+..+..
T Consensus 437 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~s 498 (667)
T 1dgs_A 437 HYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEES 498 (667)
T ss_dssp HHHSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHG
T ss_pred HHhcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHHHH
Confidence 55543 35899999999999999974 88888742 333332 34566666655543
No 48
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=92.39 E-value=0.098 Score=38.61 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 8 AGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
-+|||||||+|.+|.++ +.|++++.+
T Consensus 124 ~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 124 TSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 37999999999999876 367877774
No 49
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=92.37 E-value=0.031 Score=39.44 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=29.4
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhH
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L 63 (73)
+..+||||||+|.++-=+. +...++.. ..+++.|.+-.+.+..++..-.+
T Consensus 14 l~~LPGIG~KSA~RlA~hL------L~~~~~~~-~~La~al~~~~~~i~~C~~C~nl 63 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLAFHL------FEQPREDI-ERLASALLEAKRDLHVCPICFNI 63 (228)
T ss_dssp HHTSTTCCHHHHHHHHHHH------SSSCHHHH-HHHHHHHHHHHHHCEECSSSCCE
T ss_pred HhHCCCCCHHHHHHHHHHH------HcCCHHHH-HHHHHHHHHHHhcCeEcCCCCCC
Confidence 3568999999999885432 22211111 24666666666666555554444
No 50
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.36 E-value=0.07 Score=36.39 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.1
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+-.|||||+|+|.+++.++.
T Consensus 110 L~~vpGIG~K~A~rI~~elk 129 (203)
T 1cuk_A 110 LVKLPGIGKKTAERLIVEMK 129 (203)
T ss_dssp HHTSTTCCHHHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHHH
Confidence 35799999999999998773
No 51
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=91.76 E-value=0.21 Score=37.29 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCCcccHHHHHHHHHHhCCHHHHHH
Q 035092 9 GVEGTGDVCAVQLITKFGSLENLLQ 33 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~fgsle~i~~ 33 (73)
.-.|+|.|||..||..||+.+.+..
T Consensus 415 kkegvgrktaerllrafgnpervkq 439 (519)
T 2csb_A 415 KKEGVGRKTAERLLRAFGNPERVKQ 439 (519)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHH
T ss_pred hhcccchhHHHHHHHHhCCHHHHHH
Confidence 3479999999999999999999874
No 52
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=91.74 E-value=0.098 Score=35.23 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.5
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q 035092 8 AGVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgs 27 (73)
-.+||||||||.-+|..++-
T Consensus 120 ~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 120 LNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp TTSTTCCHHHHHHHHHHTTC
T ss_pred HcCCCcCHHHHHHHHHHhCC
Confidence 47999999999999986443
No 53
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=91.41 E-value=0.09 Score=36.19 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCCcccHHHHHHHHHHhCC
Q 035092 9 GVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~fgs 27 (73)
.+||||+|||.-+|..|+-
T Consensus 134 ~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HSTTCCHHHHHHHHHTTTC
T ss_pred hCCCCCHHHHHHHHHHcCC
Confidence 6899999999999977776
No 54
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.06 E-value=0.087 Score=36.77 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=28.4
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHhhhH
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQCVYQVEEERTRKALITFADQAVLSKNLVII 63 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~L~~L 63 (73)
+..+||||||+|.++--.. +...++-. ..+++.|.+-.+.+..+...-.+
T Consensus 28 l~~LPGIG~KsA~RlA~hL------L~~~~~~~-~~La~al~~~~~~i~~C~~C~nl 77 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLAFFI------INMPLDEV-RSLSQAIIEAKEKLRYCKICFNI 77 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHH------TTSCHHHH-HHHHHHHHHHHHHCEECTTTCCE
T ss_pred HHHCCCCCHHHHHHHHHHH------HcCCHHHH-HHHHHHHHHHHHhCCcCCCCCCC
Confidence 4568999999999885432 22211111 24666666666665555444333
No 55
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=90.99 E-value=0.11 Score=29.75 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=17.2
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..|||||+++|..|...|.
T Consensus 58 L~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 58 IAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp HTTSSSTTSHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHh
Confidence 45799999999999998774
No 56
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=90.81 E-value=0.12 Score=30.25 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.9
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..|||||+++|..|...|.
T Consensus 53 L~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 53 LALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHH
Confidence 34689999999999988774
No 57
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=90.74 E-value=0.13 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCCcccHHHHHHHHHHhCC
Q 035092 9 GVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~fgs 27 (73)
.+||||+|||.-+|...+-
T Consensus 129 ~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp HSTTCCHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHcCC
Confidence 6899999999998876543
No 58
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=89.98 E-value=0.14 Score=39.16 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=20.5
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~ 32 (73)
+..+||||+|+|.+++......++..
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~~ 155 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAAG 155 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCccHHHHHHHHHHHHHHhc
Confidence 45799999999999987766655553
No 59
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=89.91 E-value=0.14 Score=34.71 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.2
Q ss_pred CCCCcccHHHHHHHHHHh
Q 035092 8 AGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~f 25 (73)
-.+||||+|||.-+|..-
T Consensus 124 ~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 124 LDQKGIGKESADAILCYA 141 (218)
T ss_dssp HTSTTCCHHHHHHHHHHT
T ss_pred HcCCCcCHHHHHHHHHHH
Confidence 468999999999988743
No 60
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=89.27 E-value=0.17 Score=34.27 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=14.1
Q ss_pred CCCcccHHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK 24 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~ 24 (73)
.+||||+|||.-+|..
T Consensus 119 ~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 119 DLPGVGKYTCAAVMCL 134 (221)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 5899999999988864
No 61
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=89.06 E-value=0.29 Score=38.27 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=33.8
Q ss_pred cccc-ccCCCCcccHHHHHHHHHHh--CCHHHHHH----Hhhhhhh--HHHHHHHHHhHHHH
Q 035092 2 HFYF-INAGVEGTGDVCAVQLITKF--GSLENLLQ----CVYQVEE--ERTRKALITFADQA 54 (73)
Q Consensus 2 ~~~~-~I~gVpGIG~KtA~~LL~~f--gsle~i~~----~~~~l~~--~k~~~~L~~~~e~a 54 (73)
||.| +--+|.|+|+++..+|++.- .++.+++. .+..+.+ +|-+++|.+..+.+
T Consensus 442 hf~sr~amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~s 503 (586)
T 4glx_A 442 HFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKA 503 (586)
T ss_dssp HHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred hhhccccccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHH
Confidence 5555 33578888999888888774 56666652 3344433 56667776666554
No 62
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=88.91 E-value=0.19 Score=34.45 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.3
Q ss_pred CCCcccHHHHHHHHHH-hCCH
Q 035092 9 GVEGTGDVCAVQLITK-FGSL 28 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~-fgsl 28 (73)
.+||||+|||.-+|.. |+-.
T Consensus 142 ~lpGIG~kTA~~ill~alg~p 162 (233)
T 2h56_A 142 AIKGIGQWTAEMFMMFSLGRL 162 (233)
T ss_dssp TSTTCCHHHHHHHHHHTTCCS
T ss_pred hCCCcCHHHHHHHHHHhCCCC
Confidence 7899999999998764 5544
No 63
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=88.83 E-value=0.19 Score=34.05 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK 24 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~ 24 (73)
.+||||+|||..+|..
T Consensus 113 ~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 113 ALPGVGRSTAGAILSL 128 (225)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 5899999999988764
No 64
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=88.53 E-value=0.2 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.9
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..|||||+++|..|+..|.
T Consensus 66 L~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 66 LALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHTSSSCCSHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHh
Confidence 34689999999999998773
No 65
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=88.47 E-value=0.2 Score=33.59 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.0
Q ss_pred CCCcccHHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK 24 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~ 24 (73)
.+||||+|||.-+|..
T Consensus 113 ~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 113 ALPGVGRKTANVVLNT 128 (211)
T ss_dssp HSTTCCHHHHHHHHHH
T ss_pred hCCCCChHHHHHHHHH
Confidence 5899999999988875
No 66
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=87.93 E-value=0.24 Score=33.77 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=15.8
Q ss_pred cCCCCcccHHHHHHHHHH-hC
Q 035092 7 NAGVEGTGDVCAVQLITK-FG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fg 26 (73)
+-.+||||+|||..+|.. |+
T Consensus 115 L~~lpGIG~~TA~~il~~a~g 135 (226)
T 1orn_A 115 LMKLPGVGRKTANVVVSVAFG 135 (226)
T ss_dssp HTTSTTCCHHHHHHHHHHHHC
T ss_pred HHHCCCccHHHHHHHHHHHCC
Confidence 346899999999988874 44
No 67
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=87.68 E-value=0.041 Score=38.96 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.9
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHHhhh
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQCVYQ 37 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~ 37 (73)
+-.|||||++.|..++++|+|+..++++.++
T Consensus 235 L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 235 LMQVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp TTCSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred HHhccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5689999999999999999999999987654
No 68
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=86.69 E-value=0.31 Score=33.54 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=16.7
Q ss_pred cCCCCcccHHHHHHHHHH-hCCH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSL 28 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsl 28 (73)
+-.+||||++||.-+|.- |+-.
T Consensus 152 L~~l~GIG~~TA~~ill~alg~p 174 (232)
T 4b21_A 152 LSKIKGVKRWTIEMYSIFTLGRL 174 (232)
T ss_dssp HTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHhCCCcCHHHHHHHHHHhCCCC
Confidence 457999999999987664 5543
No 69
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=86.67 E-value=0.3 Score=34.47 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=17.3
Q ss_pred cCCCCcccHHHHHHHHHH-hCCH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSL 28 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsl 28 (73)
+-.+||||||||.-++.. |+-.
T Consensus 213 L~~lpGIG~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 213 LKKFMGVGPQVADCIMLFSMQKY 235 (290)
T ss_dssp HTTSTTCCHHHHHHHHHHHHCCT
T ss_pred HHhCCCcCHHHHHHHHHHhCCCC
Confidence 457999999999987754 6654
No 70
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=86.65 E-value=0.31 Score=33.33 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=17.1
Q ss_pred cCCCCcccHHHHHHHHH-HhCCH
Q 035092 7 NAGVEGTGDVCAVQLIT-KFGSL 28 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~-~fgsl 28 (73)
+-.+||||++||.-+|. .|+-.
T Consensus 141 L~~l~GIG~~TA~~ill~~lg~p 163 (228)
T 3s6i_A 141 LTQIKGIGRWTVEMLLIFSLNRD 163 (228)
T ss_dssp HTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHhCCCcCHHHHHHHHHHhCCCC
Confidence 45799999999998775 45554
No 71
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=86.57 E-value=0.3 Score=32.09 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.7
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
.-.+||||++||-.++.-
T Consensus 106 L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 106 PIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp GGGSTTCCHHHHHHHHHH
T ss_pred hhcCCCchHHHHHHHHHH
Confidence 457999999999887654
No 72
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=86.39 E-value=0.33 Score=33.10 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=15.5
Q ss_pred CCCCcccHHHHHHHHHH-hCC
Q 035092 8 AGVEGTGDVCAVQLITK-FGS 27 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fgs 27 (73)
-.+||||+|||.-+|.. |+-
T Consensus 149 ~~l~GIG~~TA~~ill~~lg~ 169 (225)
T 2yg9_A 149 VQLPGIGRWTAEMFLLFALAR 169 (225)
T ss_dssp HTSTTCCHHHHHHHHHHTSCC
T ss_pred HcCCCCCHHHHHHHHHHhCCC
Confidence 36899999999987764 443
No 73
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=86.17 E-value=0.34 Score=33.83 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=16.9
Q ss_pred cCCCCcccHHHHHHHHH-HhCCH
Q 035092 7 NAGVEGTGDVCAVQLIT-KFGSL 28 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~-~fgsl 28 (73)
+-.+||||+|||.-++. .|+..
T Consensus 209 L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 209 LQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HhcCCCcCHHHHHHHHHHhCCCC
Confidence 34799999999998766 45554
No 74
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=85.61 E-value=0.37 Score=33.94 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.7
Q ss_pred CCCCcccHHHHHHHHHH-hC
Q 035092 8 AGVEGTGDVCAVQLITK-FG 26 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fg 26 (73)
-.+||||||||.-++.. |+
T Consensus 213 ~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 213 TSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HTSTTCCHHHHHHHHHHTTC
T ss_pred hcCCCcCHHHHHHHHHHccC
Confidence 46899999999998775 55
No 75
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=84.17 E-value=0.44 Score=31.77 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.0
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q 035092 8 AGVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fgs 27 (73)
..|||||+++|.+|...|.+
T Consensus 197 ~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 197 SKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHSTTCCHHHHHHHHHHHHS
T ss_pred hhCCCCCHHHHHHHHHHHhc
Confidence 46899999999999887743
No 76
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=84.12 E-value=0.45 Score=34.00 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=13.5
Q ss_pred CCcccHHHHHHHHHH
Q 035092 10 VEGTGDVCAVQLITK 24 (73)
Q Consensus 10 VpGIG~KtA~~LL~~ 24 (73)
+||||+|||..+|..
T Consensus 134 LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 134 LPGVGRYTAGAIASI 148 (287)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 899999999998764
No 77
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=83.83 E-value=0.37 Score=36.87 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=15.5
Q ss_pred cCCCCcccHHHHHHHHHHh
Q 035092 7 NAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f 25 (73)
+-.+||||+||+.+++.-.
T Consensus 133 L~~~~GiG~Ktaq~I~~~l 151 (578)
T 2w9m_A 133 LAGLKGFGAKSAATILENV 151 (578)
T ss_dssp TTTSTTCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH
Confidence 4568999999999996543
No 78
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=83.43 E-value=0.52 Score=33.89 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=14.5
Q ss_pred CCCCcccHHHHHHHHHH
Q 035092 8 AGVEGTGDVCAVQLITK 24 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~ 24 (73)
-.+||||+|||..+|..
T Consensus 121 ~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 121 SRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp HTSTTCCHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHH
Confidence 36899999999988765
No 79
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=83.08 E-value=0.55 Score=28.77 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.2
Q ss_pred cCCCCcccHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLIT 23 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~ 23 (73)
+-.||||||..+.+|-.
T Consensus 20 V~evpGIG~~~~~~L~~ 36 (89)
T 1ci4_A 20 VGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp GGGSTTCCHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHH
Confidence 45699999999988866
No 80
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=82.63 E-value=0.58 Score=34.15 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=16.6
Q ss_pred CCCCcccHHHHHHHHHH-hCCH
Q 035092 8 AGVEGTGDVCAVQLITK-FGSL 28 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fgsl 28 (73)
-.+||||||||.-++.. |+-.
T Consensus 256 ~~LpGIGp~TA~~ill~alg~p 277 (360)
T 2xhi_A 256 CILPGVGTCVADKICLMALDKP 277 (360)
T ss_dssp TTSTTCCHHHHHHHHHHHSCCT
T ss_pred HhCCCCCHHHHHHHHHHhCCCC
Confidence 47999999999988765 5544
No 81
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=80.30 E-value=0.78 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.4
Q ss_pred CCCcccHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLIT 23 (73)
Q Consensus 9 gVpGIG~KtA~~LL~ 23 (73)
-++|||+|++..|=+
T Consensus 62 ~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 62 ILQHFGDRLCRMLDE 76 (87)
T ss_dssp TCTTTCHHHHHHHHH
T ss_pred HhhcccHHHHHHHHH
Confidence 589999999987744
No 82
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=79.94 E-value=0.89 Score=31.75 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCHHHHHHHhh
Q 035092 16 VCAVQLITKFGSLENLLQCVY 36 (73)
Q Consensus 16 KtA~~LL~~fgsle~i~~~~~ 36 (73)
++|++||++|||+.++++.+.
T Consensus 10 ~~Ak~LlkeFG~in~fLe~IP 30 (222)
T 2dla_A 10 EKAKELLKGFGSINDFMDAIP 30 (222)
T ss_dssp HHHHHHTTTTSSHHHHHHHGG
T ss_pred HHHHHHHHHhccHHHHHHHcc
Confidence 579999999999999997753
No 83
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=79.46 E-value=3.2 Score=30.15 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.8
Q ss_pred cCCCCcccHHHHHHHHHH--hCCHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK--FGSLENL 31 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~--fgsle~i 31 (73)
+.++||||+++|.++-+- -|+++.+
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~l 89 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEV 89 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHH
Confidence 578999999999876543 2555444
No 84
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=78.08 E-value=0.44 Score=33.31 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=0.0
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLEN 30 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~ 30 (73)
+-.|||||+|+|.+|+..+.....
T Consensus 50 L~~v~GIG~ktAe~I~~~l~~~~~ 73 (241)
T 1vq8_Y 50 LADVSGIGNALAARIKADVGGLEV 73 (241)
T ss_dssp ------------------------
T ss_pred HHhccCCCHHHHHHHHHHHHHHHh
Confidence 347899999999999887755443
No 85
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=77.23 E-value=1.1 Score=28.25 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=18.8
Q ss_pred cccCCCCcccHHHHHHHHHHhC
Q 035092 5 FINAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fg 26 (73)
+-+..|.|||+.+|..++++.+
T Consensus 16 ~aLt~I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 16 IALTSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp HHGGGSTTCCHHHHHHHHHHTT
T ss_pred hhHhhhcCcCHHHHHHHHHHcC
Confidence 3456789999999999999985
No 86
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=75.81 E-value=0.55 Score=36.97 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccc-ccCCCCcccHHHHHHHHHHh--CCHHHHHH----Hhhhhh--------hHHHHHHHHHhHHHH
Q 035092 2 HFYF-INAGVEGTGDVCAVQLITKF--GSLENLLQ----CVYQVE--------EERTRKALITFADQA 54 (73)
Q Consensus 2 ~~~~-~I~gVpGIG~KtA~~LL~~f--gsle~i~~----~~~~l~--------~~k~~~~L~~~~e~a 54 (73)
||-| +--+|.|+|+|+..+|++.- .++.+++. .+..+. ++|-+++|.+..+.+
T Consensus 453 hf~Sr~amdI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~s 520 (615)
T 3sgi_A 453 HVASRNGLDIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKA 520 (615)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHhccCccCccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHh
Confidence 7777 44689999999999998762 44455542 223333 235556666655543
No 87
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=75.80 E-value=1.4 Score=31.78 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.5
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+..+||||+++|.++.+-
T Consensus 59 l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHH
Confidence 457999999999987553
No 88
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=75.79 E-value=4.7 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.132 Sum_probs=17.8
Q ss_pred cCCCCcccHHHHHHHHHH--hCCHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK--FGSLENL 31 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~--fgsle~i 31 (73)
+.++||||+++|.++-+- -|.++.+
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~l 108 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEA 108 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHH
Confidence 578999999999876542 2555443
No 89
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=75.74 E-value=1.9 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=18.7
Q ss_pred cccCCCCcccHHHHHHHHHHhC
Q 035092 5 FINAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fg 26 (73)
+-+-.|.|||..+|..++++.+
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHT
T ss_pred hhHhhhcCCCHHHHHHHHHHcC
Confidence 4455689999999999999985
No 90
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=74.90 E-value=6 Score=30.01 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHHh-CCHHHHHHHhhhhhh---HHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITKF-GSLENLLQCVYQVEE---ERTRKALIT 49 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~f-gsle~i~~~~~~l~~---~k~~~~L~~ 49 (73)
.+||||+.+|++|-+.- .|++++..+.+++.. +++++++.+
T Consensus 661 qlp~i~~~rar~L~~~g~~s~~~l~~~~~~l~~~l~~~~~~~i~~ 705 (715)
T 2va8_A 661 QISGVGRKRARLLYNNGIKELGDVVMNPDKVKNLLGQKLGEKVVQ 705 (715)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHCHHHHHHHHCHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHcCCCCHHHHhCCHHHHHHHhChhHHHHHHH
Confidence 68999999999998774 899998722333322 455666655
No 91
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=74.51 E-value=4.8 Score=30.58 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCCcccHHHHHHHHHH-hCCHHHHHHHhhhhhh---HHHHHHHHHhHH
Q 035092 8 AGVEGTGDVCAVQLITK-FGSLENLLQCVYQVEE---ERTRKALITFAD 52 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~-fgsle~i~~~~~~l~~---~k~~~~L~~~~e 52 (73)
-.+||||+.+|++|-+. +.|++++.+..+++.. ++.++++.+...
T Consensus 635 ~qlp~v~~~~ar~l~~~g~~s~~~l~~~~~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 635 VRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HTSTTCCHHHHHHHHTTTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhhhHHHHHHhChhHHHHHHHhcC
Confidence 36899999999999876 7999999853344322 455666665433
No 92
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=73.79 E-value=1.6 Score=33.32 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.9
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
.-.+||||+.+|++|.+. |.|++++.+
T Consensus 648 L~qlp~v~~~rar~L~~~G~~s~~dl~~ 675 (720)
T 2zj8_A 648 LMQLPLVGRRRARALYNSGFRSIEDISQ 675 (720)
T ss_dssp GTTSTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred hhhCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 457999999999999987 899999974
No 93
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=72.89 E-value=11 Score=21.46 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHH-hCCHHHHHH----Hhhhhhh--HHHHHHHHHhHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK-FGSLENLLQ----CVYQVEE--ERTRKALITFADQAVLSKN 59 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~-fgsle~i~~----~~~~l~~--~k~~~~L~~~~e~a~ls~~ 59 (73)
...||++..+.+|... |.|++.+.- .+.+++| +...++|.+....+...+.
T Consensus 10 ~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~~~~ 67 (70)
T 1u9l_A 10 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 67 (70)
T ss_dssp HHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999975 899999963 2333343 4566677665555544443
No 94
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.14 E-value=1.9 Score=30.97 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.4
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+..+||||+++|.++-+-
T Consensus 59 l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHH
Confidence 457999999999876554
No 95
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=71.59 E-value=1.8 Score=28.61 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.2
Q ss_pred ccCCCCcccHHHHHHHHHHhC
Q 035092 6 INAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fg 26 (73)
-+-.|.|||..+|..++++.+
T Consensus 31 aLt~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 31 ALTGIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp HHTTSTTCCHHHHHHHHHHTT
T ss_pred eeecccccCHHHHHHHHHHcC
Confidence 445799999999999999985
No 96
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=70.84 E-value=3.7 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=22.2
Q ss_pred cCCCCcccHHHHHHHHHHh---CCHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKF---GSLENLLQC 34 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f---gsle~i~~~ 34 (73)
|..+||||++++.+|-+.| .++.++.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 4589999999999999865 677777543
No 97
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=69.70 E-value=2.7 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.9
Q ss_pred cccCCCCcccHHHHHHHHHH-hCCHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK-FGSLENLL 32 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~-fgsle~i~ 32 (73)
..+.++|+||+++++.|-+- ..|++++.
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~ 32 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELK 32 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 45678999999999998664 36777775
No 98
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=68.49 E-value=2 Score=31.71 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.4
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
|..++|||++++.++|+.+|
T Consensus 255 v~~l~GiG~~~~~~lL~~lG 274 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILG 274 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHcC
Confidence 34889999999999999886
No 99
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.41 E-value=2.3 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.0
Q ss_pred ccCCCCcccHHHHHHHHHHhC
Q 035092 6 INAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fg 26 (73)
-+-.|.|||..+|..++++.+
T Consensus 29 ALt~I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 29 ALTSIKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred hhhhccCcCHHHHHHHHHHcC
Confidence 345689999999999999985
No 100
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=67.10 E-value=6 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=28.8
Q ss_pred cCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhh
Q 035092 7 NAGVEGTGDVCAVQLITKFGSLENLLQCVYQVE 39 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~ 39 (73)
+--||||.+-.|..+.++|.|+..++++.++..
T Consensus 257 L~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~~~ 289 (341)
T 2ziu_B 257 IQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCF 289 (341)
T ss_dssp HTTSTTCCHHHHHHHHHHSCSHHHHHHHHHTCS
T ss_pred HHHccCCCHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 446899999999999999999999998876653
No 101
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.44 E-value=8.8 Score=22.31 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHHHh-CCHHHHHHHh
Q 035092 10 VEGTGDVCAVQLITKF-GSLENLLQCV 35 (73)
Q Consensus 10 VpGIG~KtA~~LL~~f-gsle~i~~~~ 35 (73)
.|..|.--..++|.+| .++|.+.+++
T Consensus 24 fPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 24 LPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp CCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5889999999999999 5999998874
No 102
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=65.54 E-value=3.6 Score=24.84 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=21.2
Q ss_pred cccCCCCcccHHHHHHHHHHh-CCHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITKF-GSLENLL 32 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~f-gsle~i~ 32 (73)
+.+..+|+||+++++.|-+-- .|++++.
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr 32 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELK 32 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 567889999999999886642 5666654
No 103
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.69 E-value=4.7 Score=26.40 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.7
Q ss_pred CCCCcccHHHHHHHHHHhC
Q 035092 8 AGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~fg 26 (73)
-.|.|||..+|..++++.+
T Consensus 26 t~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 26 TAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp HHSTTCCHHHHHHHHHHHT
T ss_pred hhccCcCHHHHHHHHHHhC
Confidence 3588999999999999875
No 104
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=61.95 E-value=3.3 Score=30.89 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.5
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
...|+|||+++|+.+-+-
T Consensus 349 L~~VeGIGe~rAr~Ireg 366 (377)
T 3c1y_A 349 LKKVEGIGEKRARAISES 366 (377)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HHhccCccHHHHHHHHHH
Confidence 468999999999976443
No 105
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=60.84 E-value=1.5 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.2
Q ss_pred ccCCCCcccHHHHHHHHHHhC
Q 035092 6 INAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fg 26 (73)
-+..|.|||+.+|..+++..+
T Consensus 18 aLt~I~GIG~~~A~~I~~~~g 38 (126)
T 2vqe_M 18 ALTYIYGIGKARAKEALEKTG 38 (126)
T ss_dssp HHTTSSSCCSHHHHHHTTTTT
T ss_pred ehhccccccHHHHHHHHHHcC
Confidence 345799999999999999985
No 106
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=58.60 E-value=4.8 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=18.5
Q ss_pred cCCCCcccHHHHHHHHHHhC--CHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFG--SLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg--sle~i~~ 33 (73)
|..+||||++++..| +.+| ++.++.+
T Consensus 284 v~~l~GiG~~~~~~L-~~lGI~T~gdL~~ 311 (459)
T 1t94_A 284 IRKVSGIGKVTEKML-KALGIITCTELYQ 311 (459)
T ss_dssp GGGCTTSCHHHHHHH-HHTTCCBHHHHHH
T ss_pred HHhcCCcCHHHHHHH-HHcCCCcHHHHHh
Confidence 458999999998766 7774 4555543
No 107
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=58.22 E-value=20 Score=20.10 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=24.7
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHHH-hhhh
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQC-VYQV 38 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~~-~~~l 38 (73)
+..+||||+..+.+|-.. |.|++++... .++|
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL 42 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 42 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHH
Confidence 457889999999999864 7999999742 3444
No 108
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=57.14 E-value=3.8 Score=33.03 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=19.6
Q ss_pred CCCCcccHHHHHHHHHH------hCCHHHHH
Q 035092 8 AGVEGTGDVCAVQLITK------FGSLENLL 32 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~------fgsle~i~ 32 (73)
.-||||||+.|..+++. |.|.+++.
T Consensus 511 ~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~ 541 (785)
T 3bzc_A 511 ARISGLNSTLAQNIVAHRDANGAFRTRDELK 541 (785)
T ss_dssp HTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG
T ss_pred hhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 35899999999999975 56666553
No 109
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=56.30 E-value=5.7 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=19.1
Q ss_pred cCCCCcccHHHHHHHHHHhC--CHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFG--SLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg--sle~i~~ 33 (73)
+..++|||++++.+| +.+| |+.++..
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~ 263 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQT 263 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhh
Confidence 458899999999887 5564 5666543
No 110
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=55.22 E-value=5 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=17.6
Q ss_pred cCCCCcccHHHHHHHHHHh--CCHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKF--GSLENLL 32 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f--gsle~i~ 32 (73)
+..++|||++++.+| +.+ .|+.++.
T Consensus 180 v~~l~GiG~~~~~~L-~~~GI~Ti~dL~ 206 (356)
T 4dez_A 180 PDALWGVGPKTTKKL-AAMGITTVADLA 206 (356)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHH
T ss_pred HHHHcCCchhHHHHH-HHcCCCeecccc
Confidence 347999999999876 444 4555554
No 111
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=54.62 E-value=7.2 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.4
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+-|.||.|+-|..+.|+++|
T Consensus 6 l~G~~GsGKsT~a~~L~~~g 25 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLLKERG 25 (179)
T ss_dssp EECCTTSCHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHCC
Confidence 57999999999999997665
No 112
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=53.89 E-value=6.5 Score=27.75 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.0
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..+||||++++.+| +.+|
T Consensus 181 v~~l~GiG~~~~~~L-~~~G 199 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELG 199 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTT
T ss_pred cccccCcCHHHHHHH-HHcC
Confidence 458999999998886 5554
No 113
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=51.98 E-value=6 Score=27.92 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=15.0
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..+||||++++.+| +.+|
T Consensus 180 v~~l~GiG~~~~~~L-~~~G 198 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLG 198 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTT
T ss_pred CCcccccCHHHHHHH-HHcC
Confidence 458999999999886 5554
No 114
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=51.98 E-value=6.2 Score=26.49 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=14.7
Q ss_pred cCCCCcccHHHHHHHHHHhC
Q 035092 7 NAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg 26 (73)
+..+||||++++.+| +.+|
T Consensus 186 v~~l~giG~~~~~~L-~~~G 204 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELG 204 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTT
T ss_pred cccccCCCHHHHHHH-HHcC
Confidence 458899999998886 5553
No 115
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.89 E-value=32 Score=19.68 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCH--------HHHHHHhhhhhhHHHHHHHHHhHHHH
Q 035092 15 DVCAVQLITKFGSL--------ENLLQCVYQVEEERTRKALITFADQA 54 (73)
Q Consensus 15 ~KtA~~LL~~fgsl--------e~i~~~~~~l~~~k~~~~L~~~~e~a 54 (73)
.+.|..|+++|.+. ..+.+.+..++.++++.++..+.-..
T Consensus 10 Kr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l 57 (67)
T 3j20_S 10 KRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKL 57 (67)
T ss_dssp HHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHH
Confidence 46788899998653 23344445556678898888776554
No 116
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.92 E-value=20 Score=29.93 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCCCcccHHHHHHHHH-----HhCCHHHHHHHhhhhhhHHHHHHHHH
Q 035092 8 AGVEGTGDVCAVQLIT-----KFGSLENLLQCVYQVEEERTRKALIT 49 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~-----~fgsle~i~~~~~~l~~~k~~~~L~~ 49 (73)
-.|+|+|+..|..+++ .|.|++++.... .+.. +.-+.|..
T Consensus 970 ~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~-~v~k-~~lE~Li~ 1014 (1041)
T 3f2b_A 970 NAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRG-KLSK-TLLEYLES 1014 (1041)
T ss_dssp GGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHH-TCCH-HHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHH-CcCH-HHHHHHHH
Confidence 4699999999999998 499999998764 3443 34444433
No 117
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.65 E-value=18 Score=21.87 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=21.4
Q ss_pred ccCCCCcccHHHHHHHHH-HhC----CHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLIT-KFG----SLENLLQ 33 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~-~fg----sle~i~~ 33 (73)
.+-|.||-|+-|..+.|. .++ +.+++..
T Consensus 7 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~ 39 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLR 39 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHH
Confidence 467999999999988775 467 6666653
No 118
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=46.29 E-value=11 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.8
Q ss_pred cccCCCC-cccHHHHHHHHHH
Q 035092 5 FINAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 5 ~~I~gVp-GIG~KtA~~LL~~ 24 (73)
+.|.-|| ||||.|..-||+.
T Consensus 254 ~~iTPVPGGVGpmT~a~Ll~N 274 (288)
T 1b0a_A 254 SYITPVPGGVGPMTVATLIEN 274 (288)
T ss_dssp SEECCSSSSSHHHHHHHHHHH
T ss_pred cEecCCCCCccHHHHHHHHHH
Confidence 3456677 7999999999875
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.15 E-value=11 Score=22.57 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.2
Q ss_pred CccccccCCCCcccHHHHHHHHHH
Q 035092 1 MHFYFINAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 1 ~~~~~~I~gVpGIG~KtA~~LL~~ 24 (73)
|...-.+-|.||-|+-|..+.|.+
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 444445789999999999988887
No 120
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=46.11 E-value=10 Score=31.58 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.5
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+.-|+||||++|..|++.
T Consensus 719 L~~v~GlGp~kA~~Iv~~ 736 (1030)
T 3psf_A 719 LKYISGFGKRKAIDFLQS 736 (1030)
T ss_dssp GGGSTTCCHHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHH
Confidence 457999999999999864
No 121
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=46.10 E-value=44 Score=23.22 Aligned_cols=27 Identities=0% Similarity=-0.068 Sum_probs=21.1
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
+-.+||||+..+++|-++ +.|++++.+
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 457899999999987653 468888875
No 122
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=45.40 E-value=10 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=17.3
Q ss_pred cccCCCCcccHHHHHHHHHHhC--CHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITKFG--SLENL 31 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fg--sle~i 31 (73)
.-+..++|||||+|.. |++.| ++.++
T Consensus 115 ~~~~~l~gvg~~~~~~-l~~lgi~~~~dl 142 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKK-LKKLGIETLRDL 142 (780)
T ss_dssp CCSSSSSSCCHHHHHH-HHTTTCCSSGGG
T ss_pred CCchhcCCCCHHHHHH-HHHCCCCcHHHH
Confidence 3567899999999865 45553 44444
No 123
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=44.81 E-value=15 Score=28.86 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=8.3
Q ss_pred CCCcccHHHHHHHHHH
Q 035092 9 GVEGTGDVCAVQLITK 24 (73)
Q Consensus 9 gVpGIG~KtA~~LL~~ 24 (73)
.|||||+|.++.|-.+
T Consensus 451 SVpGikek~sktL~eq 466 (685)
T 4gfj_A 451 SVEGVGERVLRSLVPG 466 (685)
T ss_dssp TSTTCCHHHHHHHSTT
T ss_pred ccccchhhhhcccccc
Confidence 4555555555555444
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=44.19 E-value=51 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.3
Q ss_pred cccCCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
..|..+||||+..+.+|-+. |.|++++..
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~ 64 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAV 64 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 45788999999999999864 789999873
No 125
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=43.59 E-value=9.3 Score=29.03 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=20.2
Q ss_pred cCCCCcccHHHHHHHHHHh-----CCHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKF-----GSLENLL 32 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f-----gsle~i~ 32 (73)
|..++|||++++.+|-+.| .++.+|.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~ 339 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIR 339 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhh
Confidence 5589999999999999876 3555443
No 126
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=43.53 E-value=8.4 Score=23.86 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=13.6
Q ss_pred CCCCcccHHHHHHHHHH
Q 035092 8 AGVEGTGDVCAVQLITK 24 (73)
Q Consensus 8 ~gVpGIG~KtA~~LL~~ 24 (73)
-.|||||+.+|.++++.
T Consensus 61 ~~i~GIse~ka~kIi~a 77 (114)
T 1b22_A 61 INIKGISEAKADKILAE 77 (114)
T ss_dssp HTTTTCSTTHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHH
Confidence 35789999888888775
No 127
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=43.20 E-value=24 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHhCCHHHHHHH-hhhh
Q 035092 11 EGTGDVCAVQLITKFGSLENLLQC-VYQV 38 (73)
Q Consensus 11 pGIG~KtA~~LL~~fgsle~i~~~-~~~l 38 (73)
-|+.|-.|-.|+.+|.|+..|++. ++++
T Consensus 360 hglspdaadeliehfesiagilatdleei 388 (519)
T 2csb_A 360 HGLSPDAADELIEHFESIAGILATDLEEI 388 (519)
T ss_dssp HCCCHHHHHHHHHHHSSHHHHHTSCHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 488999999999999999999853 5555
No 128
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=43.14 E-value=12 Score=24.13 Aligned_cols=19 Identities=26% Similarity=0.747 Sum_probs=17.0
Q ss_pred cCCCCcccHHHHHHHHHHh
Q 035092 7 NAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f 25 (73)
+.|+.|-|+-|-.++|.++
T Consensus 5 ~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999998874
No 129
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=42.77 E-value=12 Score=26.71 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.3
Q ss_pred cCCCC-cccHHHHHHHHHH
Q 035092 7 NAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVp-GIG~KtA~~LL~~ 24 (73)
|.-|| ||||.|..-||+.
T Consensus 255 iTPVPGGVGpmT~a~Ll~n 273 (281)
T 2c2x_A 255 VSPNPGGVGPLTRAFLLTN 273 (281)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred ecCCCCCccHHHHHHHHHH
Confidence 44455 8999999999875
No 130
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.18 E-value=1.7 Score=28.63 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.2
Q ss_pred ccccCCCCcccHHHHHHHHHHhCC
Q 035092 4 YFINAGVEGTGDVCAVQLITKFGS 27 (73)
Q Consensus 4 ~~~I~gVpGIG~KtA~~LL~~fgs 27 (73)
.+-+..|.|||..+|.+++++.+=
T Consensus 61 ~~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 61 EYSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp TTGGGGSTTCCSSTTTGGGTTTTC
T ss_pred EEeeeeecCccHHHHHHHHHHcCC
Confidence 344567999999999999999886
No 131
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=42.09 E-value=10 Score=28.69 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=18.6
Q ss_pred cCCCCcccHHHHHHHHHHhC--CHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFG--SLENLLQC 34 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg--sle~i~~~ 34 (73)
|..|||||++++.. |+.+| |+.++.+.
T Consensus 340 V~kl~GIG~~t~~~-L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 340 IRKVSGIGKVTEKM-LKALGIITCTELYQQ 368 (517)
T ss_dssp GGGSTTCCHHHHHH-HHHTTCCBHHHHHHH
T ss_pred hhhhccccHHHHHH-HHHhCCCcHHHHHhh
Confidence 34799999988866 46664 66666543
No 132
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=40.78 E-value=14 Score=26.62 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.5
Q ss_pred cccCCCC-cccHHHHHHHHHH
Q 035092 5 FINAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 5 ~~I~gVp-GIG~KtA~~LL~~ 24 (73)
+.|.-|| ||||-|..-||+.
T Consensus 266 ~~iTPVPGGVGpmTiamLl~N 286 (301)
T 1a4i_A 266 SFITPVPGGVGPMTVAMLMQS 286 (301)
T ss_dssp SEECCSSSSHHHHHHHHHHHH
T ss_pred eEeCCCCCCccHHHHHHHHHH
Confidence 3455566 9999999999875
No 133
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=40.59 E-value=14 Score=31.36 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.3
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+.-|+||||.+|..|++.
T Consensus 716 L~~v~GlGp~kA~~Iv~~ 733 (1219)
T 3psi_A 716 LKYISGFGKRKAIDFLQS 733 (1219)
T ss_dssp GGGSTTCCHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 457999999999999754
No 134
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=40.27 E-value=12 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.2
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-+-|.||.|+-|..+.|.+
T Consensus 5 ~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999998888876
No 135
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=40.13 E-value=16 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.2
Q ss_pred ccCCCC-cccHHHHHHHHHH
Q 035092 6 INAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVp-GIG~KtA~~LL~~ 24 (73)
.|--|| ||||.|..-||+.
T Consensus 245 ~iTPVPGGVGpmT~a~Ll~n 264 (276)
T 3ngx_A 245 AITPVPGGVGPITATNILEN 264 (276)
T ss_dssp EECCTTTSSHHHHHHHHHHH
T ss_pred EeCCCCCcChHHHHHHHHHH
Confidence 444477 7999999999875
No 136
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=39.94 E-value=72 Score=20.47 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCH--------HHHHHHhhhhhhHHHHHHHHHhHHHHH
Q 035092 15 DVCAVQLITKFGSL--------ENLLQCVYQVEEERTRKALITFADQAV 55 (73)
Q Consensus 15 ~KtA~~LL~~fgsl--------e~i~~~~~~l~~~k~~~~L~~~~e~a~ 55 (73)
.++|..|+.+|.+. ..+.+.+..++.++++.+|..+.-.+.
T Consensus 10 Kr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlm 58 (130)
T 2xzm_V 10 KRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLM 58 (130)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHh
Confidence 57889999999764 223344445566789999988766543
No 137
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=39.28 E-value=17 Score=21.90 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=16.4
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||-|+-|..++|.+
T Consensus 12 l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 369999999999999987
No 138
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=38.45 E-value=21 Score=23.88 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+..+++|+..-|++.++-
T Consensus 41 vG~~vaArLI~~AGgL~~LA 60 (169)
T 3gqu_A 41 VGAKLGARLISLAGGLKELA 60 (169)
T ss_dssp HCHHHHHHHHHHHTSHHHHH
T ss_pred hChHHHHHHHHHhCCHHHHh
Confidence 69999999999999999986
No 139
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=38.37 E-value=17 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.0
Q ss_pred cCCCCcccHHHHHHHH-HHhC
Q 035092 7 NAGVEGTGDVCAVQLI-TKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL-~~fg 26 (73)
+-|.||.|+-|..+.| ++|+
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999988 5565
No 140
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=38.27 E-value=19 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+.++++|+.+-||+.++-
T Consensus 150 vG~~vaArLI~~AGsL~~La 169 (260)
T 2ozb_B 150 IGASTAAKIMGVAGGLTNLS 169 (260)
T ss_dssp HHHHHHHHHHHHHTSHHHHH
T ss_pred hCcHHHHHHHHHhCCHHHHh
Confidence 79999999999999999986
No 141
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.23 E-value=18 Score=22.70 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.2
Q ss_pred cCCCCcccHHHHHHHH-HHhC
Q 035092 7 NAGVEGTGDVCAVQLI-TKFG 26 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL-~~fg 26 (73)
+-|.||-|+-|..+.| ++|+
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999988 6665
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.13 E-value=17 Score=22.00 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.6
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
.+-|.||.|+-|..+.|.+
T Consensus 7 ~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999888876
No 143
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=37.95 E-value=18 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.094 Sum_probs=16.3
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
.|-|.||.|+-|..+.|.+
T Consensus 5 ~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEECSSSSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999998865
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.94 E-value=19 Score=21.54 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=16.5
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||-|+-|..+.|++
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999988
No 145
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.57 E-value=17 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.9
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-|.|.||.|+-|..++|.+
T Consensus 4 ~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHH
Confidence 3679999999999999987
No 146
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=36.83 E-value=24 Score=20.15 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.6
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-.++|+|+|+..++...
T Consensus 43 Llki~n~G~kSl~EI~~~ 60 (73)
T 1z3e_B 43 MMKVRNLGRKSLEEVKAK 60 (73)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 346899999988776554
No 147
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=36.56 E-value=30 Score=19.49 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCH-----H---HHHHHhhhhhhHHHHHHHHHhHHHH
Q 035092 15 DVCAVQLITKFGSL-----E---NLLQCVYQVEEERTRKALITFADQA 54 (73)
Q Consensus 15 ~KtA~~LL~~fgsl-----e---~i~~~~~~l~~~k~~~~L~~~~e~a 54 (73)
.+.|..|+++|.+. + .+.+.+..++.++++.+|..+.-..
T Consensus 10 K~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l 57 (62)
T 1rq6_A 10 KRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRI 57 (62)
T ss_dssp HHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHH
Confidence 57789999998764 1 1233333445568888888765543
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.42 E-value=23 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=21.5
Q ss_pred cccCCCCcccHHHHHHHHHH-hC----CHHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK-FG----SLENLLQ 33 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~-fg----sle~i~~ 33 (73)
-.+-|.||-|+-|..+.|.+ ++ +.+.+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~ 38 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQ 38 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHH
Confidence 45679999999999999987 34 3455543
No 149
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=35.58 E-value=8.8 Score=27.47 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=13.7
Q ss_pred cCCCCcccHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLIT 23 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~ 23 (73)
+..+||||++++.+|-+
T Consensus 181 v~~l~GiG~~~~~~L~~ 197 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNE 197 (362)
T ss_dssp STTSTTCCSTTHHHHHH
T ss_pred hhhccCCCHHHHHHHHH
Confidence 45899999999988653
No 150
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.14 E-value=85 Score=21.14 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred ccCCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
.|..+|||++..+.+|-+. +.|++++..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~ 32 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIAT 32 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHT
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 4678899999999999764 689999984
No 151
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=35.09 E-value=15 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=17.6
Q ss_pred cCCCCcccHHHHHHHHHHhC--CHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITKFG--SLENLL 32 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~fg--sle~i~ 32 (73)
|..++|||++++.+|- .+| ++.++.
T Consensus 317 V~~l~GIG~~t~~kL~-~lGI~TigDLa 343 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLA-SLGIKTCGDLQ 343 (504)
T ss_dssp GGGSTTCCHHHHHHHH-HTTCCBHHHHT
T ss_pred hhHhhCcCHHHHHHHH-HcCCCcHHHHH
Confidence 4588999999998864 543 555553
No 152
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=34.55 E-value=91 Score=20.16 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCH--------HHHHHHhhhhhhHHHHHHHHHhHHHH
Q 035092 15 DVCAVQLITKFGSL--------ENLLQCVYQVEEERTRKALITFADQA 54 (73)
Q Consensus 15 ~KtA~~LL~~fgsl--------e~i~~~~~~l~~~k~~~~L~~~~e~a 54 (73)
.+.|..|+.+|.+. ..+.+.+..++.++++.+|..+.-.+
T Consensus 10 Kr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThL 57 (136)
T 3u5c_R 10 KRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHL 57 (136)
T ss_dssp HHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhh
Confidence 57788899999764 33444455556678999988876554
No 153
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=34.45 E-value=25 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+..+++|+..-||+.++-
T Consensus 136 vG~~vaArLIs~AGgL~~LA 155 (255)
T 3icx_A 136 VGPALGARLLSIAGSLDELA 155 (255)
T ss_dssp HCHHHHHHHHHHHSSHHHHT
T ss_pred hccHHHHHHHHHcCCHHHHh
Confidence 69999999999999999985
No 154
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=33.85 E-value=21 Score=21.91 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.3
Q ss_pred cccCCCCcccHHHHHHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~ 24 (73)
--+-|.||-|+-|..+.|.+
T Consensus 7 I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999988876
No 155
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=33.52 E-value=21 Score=25.60 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.3
Q ss_pred cCCCC-cccHHHHHHHHHH
Q 035092 7 NAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVp-GIG~KtA~~LL~~ 24 (73)
|--|| ||||.|..-||+.
T Consensus 270 iTPVPGGVGpmT~a~Ll~N 288 (300)
T 4a26_A 270 ISPVPGGVGPMTIAMLLEN 288 (300)
T ss_dssp EECTTTSSSHHHHHHHHHH
T ss_pred eCCCCCcChHHHHHHHHHH
Confidence 43366 7999999999875
No 156
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans}
Probab=32.84 E-value=38 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 110 ~g~L~~aI~~~FGS~d~fk~~F 131 (223)
T 4ffk_A 110 GGAIGDAINKFFGSFDKFKKLF 131 (223)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 3678899999999999998654
No 157
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=31.83 E-value=28 Score=25.77 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+.+|++|+.+-||+.++-
T Consensus 270 vG~~vaArLIs~AGgL~~LA 289 (376)
T 2nnw_A 270 VGAKLAARLISLAGGLRELA 289 (376)
T ss_dssp HCHHHHHHHHHHHTSHHHHH
T ss_pred hChHHHHHHHHHhCCHHHHh
Confidence 79999999999999999996
No 158
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=31.55 E-value=34 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred cccCCCCcccHHHHHHHHHH------hCCHHHHHHHh
Q 035092 5 FINAGVEGTGDVCAVQLITK------FGSLENLLQCV 35 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~------fgsle~i~~~~ 35 (73)
+-.-.|+|||+..+..+++. |.|++++....
T Consensus 833 ~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~ 869 (910)
T 2hnh_A 833 YGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCART 869 (910)
T ss_dssp CBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSS
T ss_pred hhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhc
Confidence 34567999999999999864 88999988664
No 159
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=31.40 E-value=31 Score=24.40 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+..+++|+..-|++.++-
T Consensus 146 vG~~vaArLI~~AGgL~~LA 165 (258)
T 1nt2_B 146 VGAKVAAKLLERAGSMERLV 165 (258)
T ss_dssp HCHHHHHHHHHHHCSHHHHH
T ss_pred hCcHHHHHHHHHhCCHHHHh
Confidence 69999999999999999996
No 160
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.34 E-value=47 Score=15.65 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.4
Q ss_pred HHHHHHHhhhhh
Q 035092 28 LENLLQCVYQVE 39 (73)
Q Consensus 28 le~i~~~~~~l~ 39 (73)
.++++..++++.
T Consensus 3 adelykeledlq 14 (27)
T 3twe_A 3 ADELYKELEDLQ 14 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344554444443
No 161
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=30.56 E-value=28 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=14.9
Q ss_pred ccCCCC-cccHHHHHHHHHH
Q 035092 6 INAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVp-GIG~KtA~~LL~~ 24 (73)
.|--|| ||||.|..-||+.
T Consensus 256 ~iTPVPGGVGpmT~a~Ll~n 275 (285)
T 3l07_A 256 AITPVPGGVGPMTITELLYN 275 (285)
T ss_dssp EECCSSSSSHHHHHHHHHHH
T ss_pred EeCCCCCcChHHHHHHHHHH
Confidence 444466 5999999999875
No 162
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=29.87 E-value=28 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=16.0
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||-|+-|..+.|.+
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998876
No 163
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=29.80 E-value=23 Score=21.58 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred ccCCCCcccHHHHHHHHHH-hC----CHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK-FG----SLENLLQ 33 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~-fg----sle~i~~ 33 (73)
-+-|.||-|+-|..+.|.+ ++ +.+.+..
T Consensus 13 ~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~ 45 (196)
T 2c95_A 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLR 45 (196)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHH
Confidence 3579999999999988864 55 4555543
No 164
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.70 E-value=31 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.2
Q ss_pred cccCCCCcccHHHHHHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~ 24 (73)
-.+-|.||-|+-|..+.|.+
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34679999999999998887
No 165
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A
Probab=29.15 E-value=50 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+=+.|||.|++.+..
T Consensus 90 ~g~L~~aI~~~FGS~e~fk~~F 111 (195)
T 3dc5_A 90 SKELMDTIKRDFGSLDNLQKRL 111 (195)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 4578889999999999998654
No 166
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=29.14 E-value=29 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=17.3
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+-|.+|-|+-|..+.|.+.
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 46799999999999998875
No 167
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=28.95 E-value=47 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCCCCc-ccHHH
Q 035092 7 NAGVEG-TGDVC 17 (73)
Q Consensus 7 I~gVpG-IG~Kt 17 (73)
|||.|| -|+|.
T Consensus 2 ~~~~~g~~g~~g 13 (168)
T 1buu_A 2 IEVSQGPKGQKG 13 (168)
T ss_dssp ------------
T ss_pred CCCCCCCCCCCC
Confidence 566666 56655
No 168
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=28.68 E-value=28 Score=24.77 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=14.8
Q ss_pred ccCCCC-cccHHHHHHHHHH
Q 035092 6 INAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVp-GIG~KtA~~LL~~ 24 (73)
.|--|| ||||.|..-||+.
T Consensus 257 ~iTPVPGGVGpmT~a~Ll~n 276 (286)
T 4a5o_A 257 WITPVPGGVGPMTRACLLEN 276 (286)
T ss_dssp EECCSSCSHHHHHHHHHHHH
T ss_pred EeCCCCCcchHHHHHHHHHH
Confidence 344466 6999999999875
No 169
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* 4e4e_A*
Probab=28.45 E-value=46 Score=22.64 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 108 ~g~L~~aI~~~FGS~d~fk~~F 129 (215)
T 3rn4_A 108 TGALAKAIDEQFGSLDELIKLT 129 (215)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3478999999999999998654
No 170
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=28.23 E-value=27 Score=21.15 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.5
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
.+-|.||-|+-|..+.|.+
T Consensus 9 ~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999888876
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.92 E-value=28 Score=20.92 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=20.5
Q ss_pred ccCCCCcccHHHHHHHHHH-hC----CHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK-FG----SLENLL 32 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~-fg----sle~i~ 32 (73)
-+-|.||-|+-|..+.|.+ ++ +.+++.
T Consensus 10 ~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~ 41 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLL 41 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEeeHHHHH
Confidence 4679999999999988875 45 445554
No 172
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=27.85 E-value=1.1e+02 Score=20.58 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=23.1
Q ss_pred ccccccCCCCcccHHHHHHHHHH-hC----CHHHHHH
Q 035092 2 HFYFINAGVEGTGDVCAVQLITK-FG----SLENLLQ 33 (73)
Q Consensus 2 ~~~~~I~gVpGIG~KtA~~LL~~-fg----sle~i~~ 33 (73)
|.---+-|.||-|+-|..+.|.+ |+ |..+++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR 44 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLR 44 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHH
Confidence 44456789999999999987755 65 6666653
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.82 E-value=31 Score=21.43 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=16.6
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-+-|.||-|+-|..+.|.+
T Consensus 24 ~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 24 LLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3569999999999999976
No 174
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=27.62 E-value=35 Score=19.08 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=13.1
Q ss_pred CcccHHHHHHHHHHh
Q 035092 11 EGTGDVCAVQLITKF 25 (73)
Q Consensus 11 pGIG~KtA~~LL~~f 25 (73)
=|||+++..+|+++-
T Consensus 26 lgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 26 FRIGENKLRRLAEEN 40 (70)
T ss_dssp TCSCHHHHHHHHHHC
T ss_pred HCcCHHHHHHHHHcC
Confidence 489999999999874
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=27.21 E-value=28 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.0
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+-|.||-|+-|..+.|.+.
T Consensus 16 ~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45799999999999988763
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=27.07 E-value=33 Score=21.06 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.5
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+-|.||-|+-|..+.|.+.
T Consensus 8 ~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEECCTTSSHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46799999999999999874
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=26.86 E-value=32 Score=22.05 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.3
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-+-|.||-|+-|..+.|.+
T Consensus 4 ~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3579999999999998876
No 178
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=26.79 E-value=30 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.4
Q ss_pred cCCCCcccHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQL 21 (73)
Q Consensus 7 I~gVpGIG~KtA~~L 21 (73)
...|+|||+....+-
T Consensus 59 L~~I~Gvg~~K~~~y 73 (103)
T 2e1f_A 59 VKRIDGVSEGKAAML 73 (103)
T ss_dssp HTTSTTCCHHHHHHT
T ss_pred HhcCCCCCHHHHHHH
Confidence 357899999887663
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.73 E-value=19 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=12.9
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
.+-|.||-|+-|..+.|.+.
T Consensus 9 ~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEECCC----CHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 35799999999999998753
No 180
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=26.73 E-value=31 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.8
Q ss_pred ccCCCC-cccHHHHHHHHHH
Q 035092 6 INAGVE-GTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVp-GIG~KtA~~LL~~ 24 (73)
.|--|| ||||.|..-||+.
T Consensus 256 ~iTPVPGGVGpmT~a~Ll~n 275 (285)
T 3p2o_A 256 YITPVPGGVGPMTIAMLLEN 275 (285)
T ss_dssp EECCSSSSHHHHHHHHHHHH
T ss_pred EeCCCCCcCcHHHHHHHHHH
Confidence 344466 6999999999875
No 181
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.68 E-value=34 Score=20.76 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||.|+-|..+.|.+
T Consensus 16 i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 579999999999998864
No 182
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ...
Probab=26.54 E-value=58 Score=21.78 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..|=+.|||+|++.+..
T Consensus 90 ~g~L~~aI~~~FGS~d~fk~~F 111 (198)
T 1pl4_A 90 KGELLEAIKRDFGSFDKFKEKL 111 (198)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 4578899999999999998654
No 183
>2xmx_A Colicin-M; phosphatase, antimicrobial protein, TONB BOX, antibiotic, BA; 1.67A {Escherichia coli} PDB: 3da4_A 3da3_A 2xtq_A 2xtr_A
Probab=26.48 E-value=38 Score=24.21 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.9
Q ss_pred ccCCCCcccHHHHHHHHHHhCCHHHHHHHhhhhh
Q 035092 6 INAGVEGTGDVCAVQLITKFGSLENLLQCVYQVE 39 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fgsle~i~~~~~~l~ 39 (73)
.-|-|||-||-..+-...-|.|..-++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (271)
T 2xmx_A 26 SAPHVPGAGPLLVQVVYSFFQSPNMCLQALTQLE 59 (271)
T ss_dssp CCCCCTTSCSCCHHHHHHHHTSTHHHHHHHHHHH
T ss_pred cCCCCCCCCceehhhhHHHhcChhHHHHHHHHHH
Confidence 3588999999999999999999988887766654
No 184
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=26.31 E-value=34 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.4
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+.|+.|.|+-|..++|.++
T Consensus 6 ~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 6 TFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 36899999999999988875
No 185
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=25.90 E-value=43 Score=20.22 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.3
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
.+-|.||-|+-|..+.|.+
T Consensus 8 ~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3579999999999999874
No 186
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.78 E-value=40 Score=19.63 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.8
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-.++|+|+|+..++...
T Consensus 50 Llki~n~G~kSl~EI~~~ 67 (79)
T 3gfk_B 50 MMKVRNLGRKSLEEVKAK 67 (79)
T ss_dssp HTTSTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHhHHHHHHHH
Confidence 457899999998877543
No 187
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.19 E-value=40 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.1
Q ss_pred cccCCCCcccHHHHHHHHHHhC
Q 035092 5 FINAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fg 26 (73)
--|-|.+|-|+-|..+.|.++|
T Consensus 7 I~i~G~~GSGKST~~~~L~~lg 28 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFADLG 28 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHcC
Confidence 3467999999999999999865
No 188
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=25.14 E-value=79 Score=17.87 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhHhhcCcccc
Q 035092 41 ERTRKALITFADQAVLSKNLVIIIAFSSTCY 71 (73)
Q Consensus 41 ~k~~~~L~~~~e~a~ls~~L~~L~~~~~~~~ 71 (73)
.+....+.|-.-..+++..+.+|+.-+|.|.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~ 39 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCN 39 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccc
Confidence 3455566676777778888888888888874
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=25.04 E-value=31 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.449 Sum_probs=16.9
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-+-|.||-|+-|..+.|.+
T Consensus 14 ~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4679999999999999987
No 190
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=24.64 E-value=1.4e+02 Score=20.17 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.7
Q ss_pred HhCCHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHH
Q 035092 24 KFGSLENLLQCVYQVEEERTRKALITFADQAVLSKN 59 (73)
Q Consensus 24 ~fgsle~i~~~~~~l~~~k~~~~L~~~~e~a~ls~~ 59 (73)
.|.|.-.+++.+...+.++.++++.+....|+.++.
T Consensus 131 ~Fknk~~L~e~I~k~kae~~r~k~l~dqaea~r~k~ 166 (189)
T 3u5e_R 131 AFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166 (189)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477887788888888777777777776666666654
No 191
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=24.61 E-value=47 Score=19.63 Aligned_cols=18 Identities=6% Similarity=0.029 Sum_probs=13.6
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-.++|+|+|+..++...
T Consensus 46 Llki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 46 LLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhhccccCcccHHHHHHH
Confidence 346899999988877554
No 192
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=24.51 E-value=1.1e+02 Score=20.58 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhCCH--HHHHHHhhhhhhHHHHHHHHH
Q 035092 14 GDVCAVQLITKFGSL--ENLLQCVYQVEEERTRKALIT 49 (73)
Q Consensus 14 G~KtA~~LL~~fgsl--e~i~~~~~~l~~~k~~~~L~~ 49 (73)
|.+++..+|+.+..- +++++.+++-.+ .+++.+.+
T Consensus 86 G~~~~A~IlN~~~~~~e~~il~~L~~~d~-ela~~I~~ 122 (216)
T 4fhr_B 86 GIDTAAEIMNNLDRTTEKKIMDKLVQENP-ELADEIRR 122 (216)
T ss_dssp SHHHHHHHHHHSCHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred cHHHHHHHHHcCChhHHHHHHHHHHhcCH-HHHHHHHH
Confidence 789999999999544 468888776654 45555543
No 193
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.38 E-value=32 Score=21.85 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=16.0
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||-|+-|..+.|.+
T Consensus 10 l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 469999999999999976
No 194
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus}
Probab=24.35 E-value=63 Score=23.03 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 171 ~g~L~~aI~~~FGSfd~Fk~~F 192 (280)
T 2cw3_A 171 PPRLLKLIRARWGNVDEMKENF 192 (280)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCHHHHHHHH
Confidence 3578899999999999997654
No 195
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=24.33 E-value=46 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.3
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
.+-|.||-|+-|..+.|.+
T Consensus 8 ~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3579999999999988876
No 196
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=24.23 E-value=98 Score=26.30 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=26.1
Q ss_pred ccccCCCCcccHHHHHHHHH------HhCCHHHHHHHh
Q 035092 4 YFINAGVEGTGDVCAVQLIT------KFGSLENLLQCV 35 (73)
Q Consensus 4 ~~~I~gVpGIG~KtA~~LL~------~fgsle~i~~~~ 35 (73)
++-.-.|+|||+..+..+++ .|.|++++...+
T Consensus 888 r~GL~aIkgvg~~~~~~Iv~~R~~~g~f~sl~Df~~Rv 925 (1220)
T 2hpi_A 888 LFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRL 925 (1220)
T ss_dssp ECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHS
T ss_pred eehhhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 45567899999999999986 388999998764
No 197
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=24.08 E-value=34 Score=21.12 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.2
Q ss_pred cccCCCCcccHHHHHHHHHH
Q 035092 5 FINAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~ 24 (73)
--+-|.||-|+-|..+.|.+
T Consensus 12 I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999986
No 198
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=24.02 E-value=49 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=22.9
Q ss_pred ccCCCCcccHHHHHHHHHHh--C----CHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITKF--G----SLENLLQC 34 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f--g----sle~i~~~ 34 (73)
.+-|.||-|+-|..+.|.+. | +.+++...
T Consensus 14 ~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 35699999999999999886 4 66666544
No 199
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=23.85 E-value=40 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.7
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+.|++|.|+-|..+.|.+.
T Consensus 10 ~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 10 TLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999888653
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.84 E-value=34 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=20.0
Q ss_pred ccCCCCcccHHHHHHHHHH-hC----CHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK-FG----SLENLL 32 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~-fg----sle~i~ 32 (73)
.+-|.||-|+-|..+.|.+ ++ +.++++
T Consensus 9 ~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~ 40 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTKYQLAHISAGDLL 40 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEECCHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceecHHHHH
Confidence 4579999999999888864 33 555554
No 201
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=23.28 E-value=43 Score=21.08 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=16.2
Q ss_pred cCCCCcccHHHHHHHHHHh
Q 035092 7 NAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~f 25 (73)
+-|.||-|+-|..+.|.+.
T Consensus 30 ~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999888763
No 202
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A
Probab=23.15 E-value=73 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 91 ~g~L~~aI~~~FGS~d~fk~~f 112 (194)
T 2gpc_A 91 TGKVADEINASFGSFAKFKEEF 112 (194)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 3578889999999999987654
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=23.01 E-value=35 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.4
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-+-|.||.|+-|..+.|.+
T Consensus 11 ~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4579999999999998874
No 204
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.00 E-value=41 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.0
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
.+-|.||-|+-|..+.|.+.
T Consensus 8 vl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 45799999999999988873
No 205
>4h3e_A Fesod, superoxide dismutase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Trypanosoma cruzi}
Probab=22.98 E-value=1.1e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHhCCHHHHHHHh
Q 035092 12 GTGDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 12 GIG~KtA~~LL~~fgsle~i~~~~ 35 (73)
|.....+..+-+.|||.|++.+..
T Consensus 131 ~~~~~L~~aI~~~FGS~d~fk~~F 154 (241)
T 4h3e_A 131 AMPKSFESAVTAQFGSVEQFKDAF 154 (241)
T ss_dssp CCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred CCChHHHHHHHHhhCCHHHHHHHH
Confidence 445568889999999999998664
No 206
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=22.91 E-value=40 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.454 Sum_probs=11.3
Q ss_pred cccHHHHHHHHHHhC
Q 035092 12 GTGDVCAVQLITKFG 26 (73)
Q Consensus 12 GIG~KtA~~LL~~fg 26 (73)
-||++||..| +++|
T Consensus 119 aVG~~Ta~aL-~~~G 132 (286)
T 1jr2_A 119 VVGNATASLV-SKIG 132 (286)
T ss_dssp ECSHHHHHHH-HHTT
T ss_pred EECHHHHHHH-HHcC
Confidence 5899999988 5665
No 207
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=22.87 E-value=38 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.4
Q ss_pred ccCCCCcccHHHHHHHHHHhC
Q 035092 6 INAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~fg 26 (73)
-|-|.+|-|+-|..+.|.++|
T Consensus 79 ~I~G~~GSGKSTva~~La~lg 99 (281)
T 2f6r_A 79 GLTGISGSGKSSVAQRLKNLG 99 (281)
T ss_dssp EEEECTTSCHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHCC
Confidence 457999999999999999876
No 208
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=22.80 E-value=43 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.1
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-+.|.||.|+-|..++|.+.
T Consensus 30 ~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46799999999998888765
No 209
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.79 E-value=45 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.6
Q ss_pred ccccCCCCcccHHHHHHHHHH
Q 035092 4 YFINAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 4 ~~~I~gVpGIG~KtA~~LL~~ 24 (73)
.-.+-|.||-|+-|..+.|.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999888876
No 210
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=22.78 E-value=59 Score=23.35 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhCCH--HHHHHHhhhhhhHHHHHHHHH
Q 035092 14 GDVCAVQLITKFGSL--ENLLQCVYQVEEERTRKALIT 49 (73)
Q Consensus 14 G~KtA~~LL~~fgsl--e~i~~~~~~l~~~k~~~~L~~ 49 (73)
|.+++..+|+.+..- +++++++++..+ .+++.|.+
T Consensus 199 G~~~vA~ILN~~d~~~e~~il~~L~~~dp-ela~~Ir~ 235 (329)
T 3hjl_A 199 GTAVAAELLNTLDKETRELILQSIGQEDP-LLEERIRE 235 (329)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhCH-HHHHHHHH
Confidence 678899999999654 458888877655 45555544
No 211
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=22.66 E-value=1.2e+02 Score=26.34 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=22.7
Q ss_pred cCCCCcccHHHHHHHHHH-hCCHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK-FGSLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~-fgsle~i~~ 33 (73)
+-.+||||+.+|++|-+. +.|++++.+
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~ 1586 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIME 1586 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHh
Confidence 457999999999999875 578999874
No 212
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Probab=22.66 E-value=76 Score=21.13 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 89 ~g~L~~aI~~~FGS~e~fk~~f 110 (192)
T 3lio_A 89 TGAVADAINAKWGSFDAFKEAL 110 (192)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 4578999999999999998654
No 213
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.63 E-value=37 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.5
Q ss_pred ccCCCCcccHHHHHHHHHH-hC
Q 035092 6 INAGVEGTGDVCAVQLITK-FG 26 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~-fg 26 (73)
.+-|.||-|+-|..+.|.+ ++
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3579999999999999876 54
No 214
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp}
Probab=22.54 E-value=79 Score=21.12 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 92 ~g~L~~aI~~~FGS~d~fk~~f 113 (195)
T 3h1s_A 92 SSQLKAALIETFGSVENFKEQF 113 (195)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 4578899999999999987654
No 215
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.53 E-value=50 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.6
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 035092 6 INAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~ 24 (73)
-|-|.||-|+-|..+.|.+
T Consensus 6 ~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999988876
No 216
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*
Probab=22.37 E-value=38 Score=23.12 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHHhCCHHHHHHHh---hhhh-hHHHHHHHHHhHHHHHHHHHhhhHhhcCccccc
Q 035092 18 AVQLITKFGSLENLLQCV---YQVE-EERTRKALITFADQAVLSKNLVIIIAFSSTCYL 72 (73)
Q Consensus 18 A~~LL~~fgsle~i~~~~---~~l~-~~k~~~~L~~~~e~a~ls~~L~~L~~~~~~~~~ 72 (73)
=..|.+-|..+|.+..-+ .+.. -.+++..+++....-+.-+.|++|+.-.|.+|-
T Consensus 36 Y~~L~e~F~~ldtv~~ml~~R~~~~Tf~~ik~~VE~~trr~F~~~hLaQIk~IyPeay~ 94 (201)
T 1wlq_C 36 YQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPMSYR 94 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHhcCCcCHHHHHHHHHhccCceE
Confidence 345566666666555422 1111 146777777766666677888999988888874
No 217
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=22.34 E-value=38 Score=21.83 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=17.4
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
.|.|++|.|+-|..+.|.+.
T Consensus 6 ~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 6 SIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 46899999999998888875
No 218
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=22.24 E-value=85 Score=22.11 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=25.0
Q ss_pred CCCCcc-cHHHHHHHHHHhCCHHHHHHHhhhhhhHHHHHHHH
Q 035092 8 AGVEGT-GDVCAVQLITKFGSLENLLQCVYQVEEERTRKALI 48 (73)
Q Consensus 8 ~gVpGI-G~KtA~~LL~~fgsle~i~~~~~~l~~~k~~~~L~ 48 (73)
|.++|| |=..|.+++.+.|.++++.+...++.. .+.+.|.
T Consensus 238 p~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~-~l~~~L~ 278 (361)
T 3m5u_A 238 PPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAT-MLYECID 278 (361)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHH
Confidence 444443 556677778887788888777666654 4444443
No 219
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=22.24 E-value=50 Score=24.66 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035092 13 TGDVCAVQLITKFGSLENLL 32 (73)
Q Consensus 13 IG~KtA~~LL~~fgsle~i~ 32 (73)
||+..+++|+..-||+.++-
T Consensus 269 vG~~vaArLIs~AGgL~~LA 288 (388)
T 3pla_A 269 VGPALGARLLSIAGSLDELA 288 (388)
T ss_dssp HHHHHHHHHHHHHSSHHHHH
T ss_pred hccHHHHHHHHHcCCHHHHh
Confidence 69999999999999999986
No 220
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=22.10 E-value=79 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 95 ~g~L~~aI~~~FGS~d~fk~~f 116 (199)
T 1my6_A 95 TGDVAARINSAFGSYDEFKAQF 116 (199)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3578889999999999997654
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=22.00 E-value=57 Score=19.68 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.9
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||.|+-|..+.|.+
T Consensus 10 l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 569999999999998865
No 222
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.97 E-value=54 Score=20.99 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.8
Q ss_pred cCCCCcccHHHHHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLITK 24 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~~ 24 (73)
+-|.||-|+-|..+.|.+
T Consensus 21 l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999888875
No 223
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1
Probab=21.88 E-value=82 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+=+.|||+|++.+..
T Consensus 89 ~g~L~~aI~~~FGS~d~fk~~f 110 (197)
T 1dt0_A 89 TGALADAINAAFGSFDKFKEEF 110 (197)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 3578899999999999997654
No 224
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Probab=21.83 E-value=81 Score=20.95 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+=+.|||+|++.+..
T Consensus 90 ~g~L~~aI~~~FGS~d~fk~~f 111 (191)
T 1uer_A 90 KGKLGEAIDKQFGSFEKFKEEF 111 (191)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3578899999999999997654
No 225
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Probab=21.62 E-value=82 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+=+.|||+|++.+..
T Consensus 89 ~g~L~~aI~~~FGS~d~fk~~f 110 (192)
T 2nyb_A 89 TGKVAEAIAASFGSFADFKAQF 110 (192)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 3578899999999999997654
No 226
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=21.61 E-value=48 Score=20.50 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.9
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
.|-|.+|-|+-|..+.|.+.
T Consensus 22 ~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 46799999999999988654
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.43 E-value=44 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.6
Q ss_pred ccCCCCcccHHHHHHHHHHh
Q 035092 6 INAGVEGTGDVCAVQLITKF 25 (73)
Q Consensus 6 ~I~gVpGIG~KtA~~LL~~f 25 (73)
-|-|.+|-|+-|..++|.++
T Consensus 5 ~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEECTTSSHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHHHC
Confidence 46799999999999999885
No 228
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.30 E-value=82 Score=21.43 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..|-+.|||+|++.+..
T Consensus 108 ~g~L~~aI~~~FGS~d~fk~~F 129 (217)
T 1xre_A 108 NGDVAKVIDYYFNTFDNLKDQL 129 (217)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 3578899999999999997654
No 229
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.94 E-value=51 Score=20.30 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=19.8
Q ss_pred cCCCCcccHHHHHHHHH-HhC----CHHHHHH
Q 035092 7 NAGVEGTGDVCAVQLIT-KFG----SLENLLQ 33 (73)
Q Consensus 7 I~gVpGIG~KtA~~LL~-~fg----sle~i~~ 33 (73)
+-|.||-|+-|..+.|. .++ +.+++..
T Consensus 20 l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~ 51 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLR 51 (203)
T ss_dssp EECSTTSSHHHHHHHHHHHSSCEEEEHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCceEEeHHHHHH
Confidence 57999999999887765 565 3555543
No 230
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=20.94 E-value=51 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred cccCCCCcccHHHHHHHHHHhC
Q 035092 5 FINAGVEGTGDVCAVQLITKFG 26 (73)
Q Consensus 5 ~~I~gVpGIG~KtA~~LL~~fg 26 (73)
.-|-|-+|-|+-|..++|..+|
T Consensus 5 i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
Confidence 4567999999999999999876
No 231
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.82 E-value=1.4e+02 Score=18.00 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh---CCHHHHHHHhhhhh
Q 035092 15 DVCAVQLITKF---GSLENLLQCVYQVE 39 (73)
Q Consensus 15 ~KtA~~LL~~f---gsle~i~~~~~~l~ 39 (73)
.|....+|++| +++++....++++.
T Consensus 7 ~kki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 7 VKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46677899999 88888888888774
No 232
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii}
Probab=20.73 E-value=87 Score=21.27 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 90 ~g~L~~aI~~~FGS~d~fk~~F 111 (210)
T 3tqj_A 90 SGELASAIDKTFGSLEKFKALF 111 (210)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHH
Confidence 4578999999999999997654
No 233
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum}
Probab=20.15 E-value=90 Score=21.38 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHhCCHHHHHHHh
Q 035092 14 GDVCAVQLITKFGSLENLLQCV 35 (73)
Q Consensus 14 G~KtA~~LL~~fgsle~i~~~~ 35 (73)
..+.+..+-+.|||+|++.+..
T Consensus 117 ~g~L~~aI~~~FGS~d~fk~~F 138 (227)
T 3js4_A 117 PEKLREMIEHSFGSVEGFNNAF 138 (227)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHH
Confidence 3578999999999999997654
Done!