Query 035093
Match_columns 73
No_of_seqs 115 out of 570
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgk_A Riken cDNA 2900073H19 p 100.0 5.5E-29 1.9E-33 156.0 5.6 72 2-73 34-108 (114)
2 2k9x_A Tburm1, uncharacterized 99.9 6.2E-28 2.1E-32 150.5 6.3 72 2-73 25-102 (110)
3 2qjl_A URM1, ubiquitin-related 99.9 1.5E-25 5E-30 136.2 7.4 72 2-73 24-99 (99)
4 3dwg_C 9.5 kDa culture filtrat 99.9 1.7E-24 5.7E-29 129.6 7.1 69 5-73 23-93 (93)
5 3po0_A Small archaeal modifier 99.9 3.7E-23 1.3E-27 122.7 6.9 68 2-73 22-89 (89)
6 2g1e_A Hypothetical protein TA 99.9 2.8E-22 9.5E-27 118.5 6.8 71 2-73 19-90 (90)
7 1vjk_A Molybdopterin convertin 99.9 2.1E-21 7.1E-26 117.5 7.4 68 2-73 31-98 (98)
8 2l52_A Methanosarcina acetivor 99.8 3.1E-21 1.1E-25 117.2 7.1 69 3-73 24-99 (99)
9 1v8c_A MOAD related protein; r 99.8 1.1E-18 3.6E-23 115.1 5.9 70 2-73 18-87 (168)
10 1fm0_D Molybdopterin convertin 99.7 9.6E-17 3.3E-21 93.0 4.9 59 5-73 23-81 (81)
11 3rpf_C Molybdopterin convertin 99.7 1.7E-16 5.8E-21 91.5 5.9 59 2-73 16-74 (74)
12 2q5w_D Molybdopterin convertin 99.6 9.1E-16 3.1E-20 88.3 5.8 58 2-73 20-77 (77)
13 1f0z_A THis protein; ubiquitin 99.5 2.5E-15 8.7E-20 85.0 3.2 57 2-73 10-66 (66)
14 2cu3_A Unknown function protei 99.5 1E-14 3.5E-19 82.1 5.2 56 2-73 9-64 (64)
15 1tyg_B YJBS; alpha beta barrel 99.4 2.8E-13 9.5E-18 81.1 4.7 57 2-73 30-87 (87)
16 1rws_A Hypothetical protein PF 99.3 3.9E-13 1.3E-17 78.1 1.8 53 2-73 25-77 (77)
17 1ryj_A Unknown; beta/alpha pro 99.2 2E-11 6.7E-16 69.7 6.1 53 2-73 18-70 (70)
18 2kl0_A Putative thiamin biosyn 99.0 2.4E-10 8.3E-15 66.0 4.5 56 2-73 10-65 (73)
19 2k5p_A THis protein, thiamine- 99.0 2.2E-10 7.7E-15 67.0 2.6 58 2-73 10-69 (78)
20 2l32_A Small archaeal modifier 98.6 2.8E-08 9.5E-13 57.4 3.0 52 2-73 15-66 (74)
21 2hj1_A Hypothetical protein; s 98.6 8.7E-08 3E-12 58.1 4.6 55 2-70 30-86 (97)
22 2kmm_A Guanosine-3',5'-BIS(dip 97.6 5.9E-05 2E-09 41.9 3.8 54 2-72 13-66 (73)
23 3hvz_A Uncharacterized protein 97.6 4E-05 1.4E-09 44.5 3.1 51 2-69 18-68 (78)
24 3a9j_A Ubiquitin; protein comp 95.8 0.032 1.1E-06 30.1 5.6 60 2-73 15-76 (76)
25 1ndd_A NEDD8, protein (ubiquit 95.7 0.033 1.1E-06 30.0 5.3 60 2-73 15-76 (76)
26 3n3k_B Ubiquitin; hydrolase, p 95.4 0.051 1.7E-06 30.0 5.5 60 2-73 18-79 (85)
27 3mtn_B UBA80, ubcep1, ubiquiti 95.3 0.055 1.9E-06 29.8 5.3 60 2-73 18-79 (85)
28 3dbh_I NEDD8; cell cycle, acti 94.6 0.092 3.1E-06 29.2 5.0 60 2-73 27-88 (88)
29 1sif_A Ubiquitin; hydrophobic 94.5 0.097 3.3E-06 29.7 5.2 60 2-73 24-85 (88)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 94.2 0.074 2.5E-06 29.7 4.1 60 2-73 22-83 (87)
31 2eki_A DRG 1, developmentally- 94.2 0.11 3.6E-06 31.1 4.8 51 2-69 29-87 (93)
32 3k9o_B Ubiquitin, UBB+1; E2-25 94.0 0.17 5.7E-06 28.7 5.4 60 2-73 16-77 (96)
33 4hcn_B Polyubiquitin, ubiquiti 93.9 0.15 5.1E-06 29.5 5.1 60 2-73 37-98 (98)
34 1yx5_B Ubiquitin; proteasome, 93.7 0.25 8.5E-06 28.3 5.9 60 2-73 15-76 (98)
35 4fbj_B NEDD8; effector-HOST ta 93.3 0.27 9.3E-06 27.7 5.5 60 2-73 15-76 (88)
36 2l7r_A Ubiquitin-like protein 93.3 0.15 5E-06 29.3 4.3 60 2-73 32-93 (93)
37 2ojr_A Ubiquitin; lanthide-bin 93.1 0.28 9.7E-06 28.9 5.5 60 2-73 50-111 (111)
38 1wwt_A Threonyl-tRNA synthetas 93.0 0.047 1.6E-06 31.1 1.8 49 3-68 23-72 (88)
39 3vdz_A Ubiquitin-40S ribosomal 92.5 0.36 1.2E-05 28.6 5.4 60 2-73 50-111 (111)
40 1wy8_A NP95-like ring finger p 92.2 0.28 9.6E-06 27.3 4.5 59 3-73 25-85 (89)
41 2hj8_A Interferon-induced 17 k 92.2 0.22 7.6E-06 28.1 4.0 60 2-73 19-80 (88)
42 3va4_A Mediator of DNA damage 92.1 0.11 3.7E-06 32.1 2.8 26 41-66 91-116 (132)
43 3fm8_A Kinesin-like protein KI 92.1 0.082 2.8E-06 32.6 2.2 23 40-66 91-113 (124)
44 1v5o_A 1700011N24RIK protein; 91.9 0.28 9.7E-06 28.5 4.4 61 2-73 26-88 (102)
45 4ejq_A Kinesin-like protein KI 91.3 0.13 4.4E-06 32.5 2.5 23 40-66 111-133 (154)
46 1we6_A Splicing factor, putati 91.3 0.6 2E-05 27.4 5.4 60 2-73 45-107 (111)
47 2kan_A Uncharacterized protein 91.3 0.42 1.4E-05 27.5 4.6 60 2-73 29-91 (94)
48 2uyz_B Small ubiquitin-related 91.0 0.17 5.8E-06 27.7 2.6 61 2-73 18-79 (79)
49 1wln_A Afadin; beta sandwich, 91.0 0.14 4.8E-06 30.8 2.4 24 40-67 81-104 (120)
50 2kdi_A Ubiquitin, vacuolar pro 91.0 0.81 2.8E-05 27.2 5.8 60 2-73 24-85 (114)
51 2io0_B Small ubiquitin-related 90.9 1 3.5E-05 26.1 6.0 61 2-73 20-81 (91)
52 3goe_A DNA repair protein RAD6 90.9 0.83 2.8E-05 26.7 5.5 56 2-67 24-80 (82)
53 2bwf_A Ubiquitin-like protein 90.6 0.84 2.9E-05 24.4 5.2 57 2-70 18-76 (77)
54 3phx_B Ubiquitin-like protein 90.5 0.82 2.8E-05 24.8 5.2 59 2-72 19-79 (79)
55 4h87_A Kanadaptin; FHA domain 90.3 0.2 6.8E-06 30.8 2.7 24 41-66 96-119 (130)
56 2io1_B Small ubiquitin-related 90.1 0.76 2.6E-05 26.7 5.0 61 2-73 22-83 (94)
57 1tke_A Threonyl-tRNA synthetas 90.0 0.23 8E-06 32.7 3.0 50 2-68 12-61 (224)
58 1wyw_B Ubiquitin-like protein 89.9 0.33 1.1E-05 28.0 3.3 61 2-73 36-97 (97)
59 2d07_B Ubiquitin-like protein 89.8 1.1 3.6E-05 25.9 5.4 61 2-73 32-93 (93)
60 3b08_A Polyubiquitin-C, ubiqui 89.6 0.93 3.2E-05 27.2 5.3 60 2-73 91-152 (152)
61 4egx_A Kinesin-like protein KI 89.3 0.23 7.7E-06 32.4 2.4 25 38-66 139-163 (184)
62 2bps_A YUKD protein; ubiquitin 89.0 0.51 1.7E-05 27.2 3.6 58 2-66 21-80 (81)
63 1wgd_A Homocysteine-responsive 88.9 0.52 1.8E-05 26.7 3.6 60 2-73 24-89 (93)
64 2pjh_A Protein NPL4, nuclear p 88.6 0.68 2.3E-05 26.1 3.9 60 2-68 18-79 (80)
65 1uel_A HHR23B, UV excision rep 88.5 1.3 4.5E-05 25.2 5.2 54 2-67 15-73 (95)
66 1j8c_A Ubiquitin-like protein 88.4 1.1 3.6E-05 27.2 5.0 60 2-73 46-107 (125)
67 1yqb_A Ubiquilin 3; structural 88.3 0.67 2.3E-05 26.9 3.9 60 2-73 36-97 (100)
68 3l0w_B Monoubiquitinated proli 88.3 1.2 4.2E-05 28.2 5.4 60 2-73 15-76 (169)
69 1lgp_A Cell cycle checkpoint p 88.2 0.24 8.1E-06 29.4 1.8 27 41-69 70-96 (116)
70 1we7_A SF3A1 protein; structur 88.1 0.98 3.4E-05 26.7 4.6 60 2-73 50-111 (115)
71 2pie_A E3 ubiquitin-protein li 88.1 0.42 1.4E-05 29.3 3.0 29 41-71 77-105 (138)
72 2wyq_A HHR23A, UV excision rep 88.1 1.4 4.9E-05 24.0 5.0 55 2-68 20-79 (85)
73 3b08_A Polyubiquitin-C, ubiqui 88.0 1.7 5.7E-05 26.0 5.7 60 2-73 15-76 (152)
74 3u7z_A Putative metal binding 88.0 0.87 3E-05 27.3 4.3 62 2-67 25-96 (101)
75 1gxc_A CHK2, CDS1, serine/thre 87.9 0.25 8.7E-06 30.8 1.9 27 41-69 105-131 (149)
76 2dzj_A Synaptic glycoprotein S 87.7 0.7 2.4E-05 26.4 3.6 53 3-66 29-85 (88)
77 3q3f_A Ribonuclease/ubiquitin 87.5 1.2 4E-05 29.2 5.0 60 2-73 120-181 (189)
78 2pmv_A Gastric intrinsic facto 87.0 2.1 7.2E-05 31.2 6.6 65 2-67 317-395 (399)
79 1wx7_A Ubiquilin 3; ubiquitin- 86.8 0.7 2.4E-05 26.8 3.4 60 2-73 31-92 (106)
80 3po8_A RV0020C protein, putati 86.8 0.29 9.8E-06 28.3 1.6 21 41-66 67-87 (100)
81 3rt3_B Ubiquitin-like protein 86.7 1.7 5.7E-05 26.6 5.2 60 2-73 96-157 (159)
82 3hx1_A SLR1951 protein; P74513 86.7 0.28 9.5E-06 30.1 1.6 22 41-67 84-105 (131)
83 1uht_A Expressed protein; FHA 86.4 0.3 1E-05 29.1 1.5 24 41-66 78-101 (118)
84 2jqj_A DNA damage response pro 86.4 0.33 1.1E-05 30.2 1.8 24 41-67 89-112 (151)
85 1wx8_A Riken cDNA 4931431F19; 85.9 0.5 1.7E-05 26.8 2.3 60 2-73 31-92 (96)
86 3v6c_B Ubiquitin; structural g 85.8 1.9 6.4E-05 24.1 4.7 55 2-68 32-88 (91)
87 1wz0_A Ubiquitin-like protein 85.6 2.2 7.7E-05 25.2 5.2 61 2-73 39-100 (104)
88 1wjn_A Tubulin-folding protein 85.4 2.8 9.4E-05 23.9 5.4 62 3-68 28-91 (97)
89 2k6p_A Uncharacterized protein 85.2 0.58 2E-05 26.6 2.3 23 41-67 28-50 (92)
90 1v5t_A 8430435I17RIK protein; 85.0 1.2 3.9E-05 25.2 3.6 55 3-68 23-81 (90)
91 3m62_B UV excision repair prot 84.9 2.8 9.6E-05 24.4 5.4 54 2-67 16-71 (106)
92 2kd0_A LRR repeats and ubiquit 84.9 1.8 6.3E-05 24.1 4.4 55 2-68 26-82 (85)
93 2xt9_B Putative signal transdu 84.7 0.49 1.7E-05 28.1 1.9 21 41-66 75-95 (115)
94 2dzi_A Ubiquitin-like protein 84.6 1.6 5.3E-05 23.5 3.9 56 2-69 22-79 (81)
95 3gqs_A Adenylate cyclase-like 84.6 0.34 1.2E-05 28.3 1.2 22 41-66 71-92 (106)
96 1dmz_A Protein (protein kinase 84.5 0.35 1.2E-05 30.5 1.3 25 41-67 85-109 (158)
97 1wgg_A Ubiquitin carboxyl-term 84.4 1.4 4.9E-05 25.3 3.9 53 2-67 22-76 (96)
98 2faz_A Ubiquitin-like containi 84.1 3.4 0.00011 22.1 5.4 56 2-69 18-76 (78)
99 1wia_A Hypothetical ubiquitin- 84.1 0.9 3.1E-05 25.7 2.9 54 2-68 22-76 (95)
100 2eke_C Ubiquitin-like protein 84.0 2.9 0.0001 24.9 5.2 61 2-73 45-106 (106)
101 2csw_A Ubiquitin ligase protei 83.7 0.82 2.8E-05 28.3 2.7 27 41-69 85-111 (145)
102 2bb6_A TCII, TC II, transcobal 83.6 1.9 6.3E-05 31.6 4.9 63 2-66 334-409 (414)
103 3m63_B Ubiquitin domain-contai 83.6 2.2 7.5E-05 24.7 4.5 54 2-67 42-97 (101)
104 1g6g_A Protein kinase RAD53; b 83.1 0.79 2.7E-05 27.6 2.4 28 41-70 81-108 (127)
105 2klc_A Ubiquilin-1; ubiquitin- 82.9 4.9 0.00017 23.1 6.0 58 2-71 39-98 (101)
106 1g3g_A Protien kinase SPK1; FH 82.8 0.73 2.5E-05 29.1 2.3 27 41-69 109-135 (164)
107 1qu5_A Protein kinase SPK1; FH 82.5 0.44 1.5E-05 30.9 1.2 25 41-67 109-133 (182)
108 2kfu_A RV1827 PThr 22; FHA dom 82.3 0.83 2.8E-05 29.2 2.4 21 41-66 119-139 (162)
109 3oun_A Putative uncharacterize 82.0 0.58 2E-05 29.9 1.6 21 41-66 129-149 (157)
110 2k8h_A Small ubiquitin protein 81.9 1.6 5.5E-05 26.2 3.5 58 2-73 41-102 (110)
111 3kt9_A Aprataxin; FHA domain, 81.7 0.59 2E-05 28.0 1.4 26 42-69 67-92 (102)
112 3u5e_m 60S ribosomal protein L 81.1 0.31 1E-05 29.5 0.0 60 2-73 15-76 (128)
113 2kb3_A Oxoglutarate dehydrogen 80.8 0.54 1.8E-05 29.3 1.1 21 41-66 110-130 (143)
114 1wm3_A Ubiquitin-like protein 80.8 4.9 0.00017 21.7 5.1 55 2-67 16-71 (72)
115 2bs2_B Quinol-fumarate reducta 80.5 5.7 0.00019 25.9 6.1 63 2-68 28-93 (241)
116 1dm9_A Hypothetical 15.5 KD pr 80.5 1.7 5.9E-05 26.7 3.3 23 41-67 36-58 (133)
117 3u30_A Ubiquitin, linear DI-ub 80.1 5 0.00017 24.8 5.5 60 2-73 35-96 (172)
118 1r21_A Antigen KI-67; beta san 79.8 0.53 1.8E-05 28.4 0.8 22 41-66 77-98 (128)
119 3u30_A Ubiquitin, linear DI-ub 79.5 3.3 0.00011 25.7 4.5 60 2-73 111-172 (172)
120 3a4r_A Nfatc2-interacting prot 79.1 5.7 0.0002 21.9 5.0 52 2-67 23-78 (79)
121 3els_A PRE-mRNA leakage protei 78.5 0.71 2.4E-05 29.3 1.1 25 41-67 119-143 (158)
122 1wxq_A GTP-binding protein; st 78.3 0.84 2.9E-05 32.5 1.5 51 3-68 344-394 (397)
123 3u5c_f 40S ribosomal protein S 78.1 0.44 1.5E-05 30.2 0.0 60 2-73 15-76 (152)
124 3rt3_B Ubiquitin-like protein 77.6 7 0.00024 23.7 5.5 57 2-69 17-76 (159)
125 1v2y_A 3300001G02RIK protein; 77.0 1.9 6.4E-05 25.7 2.6 63 2-72 22-98 (105)
126 1c05_A Ribosomal protein S4 de 76.5 2.7 9.2E-05 26.6 3.4 27 41-70 78-104 (159)
127 1v86_A DNA segment, CHR 7, way 76.5 2.3 7.8E-05 24.3 2.8 54 2-68 31-86 (95)
128 1mzk_A Kinase associated prote 76.2 1.1 3.8E-05 27.4 1.5 26 41-66 78-109 (139)
129 2jpe_A Nuclear inhibitor of pr 76.2 0.55 1.9E-05 28.8 0.1 24 41-66 102-125 (140)
130 2h88_B Succinate dehydrogenase 74.1 12 0.00039 24.8 6.2 63 2-68 35-101 (252)
131 3elv_A PRE-mRNA leakage protei 73.8 1.3 4.3E-05 29.6 1.4 27 41-69 166-192 (205)
132 3b1l_X E3 ubiquitin-protein li 75.9 0.68 2.3E-05 24.8 0.0 59 2-72 15-75 (76)
133 2kk8_A Uncharacterized protein 73.6 3.5 0.00012 23.0 3.1 55 2-67 25-81 (84)
134 4a9a_A Ribosome-interacting GT 73.1 4.1 0.00014 29.0 4.0 18 51-68 358-375 (376)
135 3jxo_A TRKA-N domain protein; 71.2 6.3 0.00021 21.4 3.8 26 42-69 47-72 (86)
136 3tix_A Ubiquitin-like protein 71.2 9.3 0.00032 25.7 5.1 61 2-73 71-132 (207)
137 3pge_A SUMO-modified prolifera 71.1 14 0.00048 24.4 6.0 61 2-73 43-104 (200)
138 2vqe_D 30S ribosomal protein S 71.1 3.4 0.00012 27.3 3.0 25 41-68 126-150 (209)
139 2brf_A Bifunctional polynucleo 70.6 2 7E-05 26.0 1.7 27 41-69 72-98 (110)
140 4a20_A Ubiquitin-like protein 69.7 14 0.00047 21.4 5.2 54 3-68 37-94 (98)
141 1p9k_A ORF, hypothetical prote 69.4 2.5 8.4E-05 23.4 1.7 23 41-66 48-70 (79)
142 4dbg_A Ranbp-type and C3HC4-ty 69.0 12 0.00041 22.2 4.9 54 2-67 41-97 (105)
143 1ttn_A DC-UBP, dendritic cell- 68.6 7 0.00024 22.5 3.7 55 2-68 38-94 (106)
144 1v6e_A Cytoskeleton-associated 68.6 13 0.00044 20.9 4.8 59 2-67 23-85 (95)
145 1wv3_A Similar to DNA segregat 68.5 2.3 7.7E-05 28.5 1.7 22 41-66 137-159 (238)
146 4dwf_A HLA-B-associated transc 68.2 6.6 0.00023 21.5 3.5 20 2-21 20-39 (90)
147 1wju_A NEDD8 ultimate buster-1 68.2 3.7 0.00013 24.3 2.4 53 2-67 34-89 (100)
148 2kdb_A Homocysteine-responsive 67.5 5 0.00017 23.3 2.9 20 2-21 40-59 (99)
149 2ff4_A Probable regulatory pro 67.1 2.1 7.3E-05 30.0 1.4 22 41-66 350-371 (388)
150 2jxx_A Nfatc2-interacting prot 67.0 11 0.00038 22.0 4.4 51 3-67 42-96 (97)
151 1se9_A Ubiquitin family; ubiqu 65.6 12 0.00043 22.9 4.6 23 2-24 32-54 (126)
152 1oqy_A HHR23A, UV excision rep 65.3 16 0.00055 26.1 5.7 51 2-64 22-77 (368)
153 1wxv_A BAG-family molecular ch 64.3 7.8 0.00027 21.5 3.2 50 7-68 31-83 (92)
154 1wf9_A NPL4 family protein; be 64.1 17 0.00059 20.9 4.9 27 2-28 21-50 (107)
155 1uh6_A Ubiquitin-like 5; beta- 63.2 5.4 0.00018 23.6 2.5 54 2-67 43-98 (100)
156 3vr8_B Iron-sulfur subunit of 63.1 7.3 0.00025 26.9 3.5 63 2-68 59-125 (282)
157 2exd_A NFED short homolog; mem 62.6 13 0.00045 20.8 4.0 32 35-68 27-58 (80)
158 3kyd_D Small ubiquitin-related 61.0 25 0.00084 21.2 6.0 57 2-69 55-112 (115)
159 4eew_A Large proline-rich prot 60.6 8.5 0.00029 21.0 2.9 20 2-21 32-51 (88)
160 1kf6_B Fumarate reductase iron 59.6 26 0.0009 22.6 5.6 56 2-61 28-84 (243)
161 1ksk_A Ribosomal small subunit 59.4 5.4 0.00019 26.0 2.2 24 41-67 30-53 (234)
162 3sr3_A Microcin immunity prote 58.2 6.1 0.00021 27.6 2.4 17 56-72 8-24 (336)
163 3bbn_D Ribosomal protein S4; s 58.0 6.8 0.00023 25.9 2.5 26 40-68 115-140 (201)
164 1y8x_B Ubiquitin-activating en 57.8 6.5 0.00022 23.2 2.2 19 2-20 9-27 (98)
165 2gow_A HCG-1 protein, ubiquiti 56.9 30 0.001 20.9 5.6 23 2-24 32-54 (125)
166 2kdd_A Borealin; protein dimer 56.2 3.3 0.00011 23.6 0.6 18 56-73 15-32 (76)
167 3plu_A Ubiquitin-like modifier 56.1 15 0.00052 21.4 3.6 53 2-67 36-91 (93)
168 2k5h_A Conserved protein; stru 55.2 12 0.0004 21.9 3.0 28 39-68 57-84 (101)
169 1vio_A Ribosomal small subunit 55.1 6.9 0.00024 25.8 2.2 24 41-67 29-52 (243)
170 1x1m_A Ubiquitin-like protein 54.5 16 0.00053 21.0 3.5 50 7-68 44-98 (107)
171 1oey_A P67-PHOX, neutrophil cy 54.3 18 0.00063 20.7 3.7 46 2-49 18-65 (83)
172 3tla_A MCCF; serine protease, 54.1 7.6 0.00026 27.7 2.4 18 55-72 37-54 (371)
173 4hv0_A AVTR; ribbon-helix-heli 53.7 14 0.00047 22.4 3.1 46 6-51 20-65 (106)
174 4b6w_A Tubulin-specific chaper 53.4 12 0.00043 20.9 2.8 60 3-67 20-81 (86)
175 3kwl_A Uncharacterized protein 53.0 4.9 0.00017 29.7 1.3 50 2-68 47-101 (514)
176 1t0y_A Tubulin folding cofacto 52.3 18 0.00063 21.3 3.6 58 2-67 22-84 (122)
177 3mub_A Alanine racemase; alpha 52.0 13 0.00046 26.0 3.4 29 41-69 295-332 (367)
178 1yj5_C 5' polynucleotide kinas 50.8 5 0.00017 25.5 0.9 27 41-69 72-98 (143)
179 2kjr_A CG11242; UBL, ubiquitin 50.1 16 0.00056 20.8 3.0 59 2-67 32-93 (95)
180 3ivf_A Talin-1; FERM domain, c 49.1 31 0.0011 23.8 4.8 60 3-68 18-83 (371)
181 3dh3_A Ribosomal large subunit 49.0 9.4 0.00032 26.2 2.1 23 41-67 33-55 (290)
182 1wgh_A Ubiquitin-like 3, HCG-1 48.6 39 0.0013 20.1 4.7 23 2-24 31-53 (116)
183 3ec0_A Protease; HIV-2, inhibi 48.0 12 0.00041 22.1 2.2 25 36-60 8-35 (99)
184 1zl0_A Hypothetical protein PA 47.6 11 0.00039 26.1 2.4 17 56-72 12-28 (311)
185 2k14_A YUAF protein; NFED-like 46.9 18 0.00061 20.0 2.8 29 40-68 38-70 (84)
186 1jal_A YCHF protein; nucleotid 46.6 8.5 0.00029 27.3 1.6 17 50-66 343-359 (363)
187 3fm3_A Methionine aminopeptida 46.4 36 0.0012 23.8 4.8 60 4-66 66-129 (358)
188 3cp0_A Membrane protein implic 46.0 17 0.00059 19.9 2.6 30 39-68 40-70 (82)
189 3soe_A Membrane-associated gua 46.0 7.2 0.00025 23.3 1.0 36 32-67 47-88 (113)
190 3e5p_A Alanine racemase; ALR, 45.7 13 0.00045 26.1 2.5 29 41-69 299-336 (371)
191 3shq_A UBLCP1; phosphatase, hy 44.9 45 0.0016 23.1 5.1 57 2-69 19-79 (320)
192 2hs1_A HIV-1 protease; ultra-h 44.1 12 0.00042 22.0 1.8 16 36-51 8-23 (99)
193 2daf_A FLJ35834 protein; hypot 44.0 19 0.00065 22.0 2.7 53 2-67 31-86 (118)
194 1xgs_A Methionine aminopeptida 43.8 59 0.002 21.9 5.5 56 4-66 24-81 (295)
195 2dby_A GTP-binding protein; GD 43.7 8 0.00027 27.3 1.1 17 50-66 348-364 (368)
196 2akk_A RP4479, PHNA-like prote 43.6 13 0.00046 21.1 1.9 14 54-67 9-22 (74)
197 2kj6_A Tubulin folding cofacto 43.4 45 0.0015 19.0 5.0 59 2-67 31-93 (97)
198 2ohf_A Protein OLA1, GTP-bindi 43.0 10 0.00035 27.2 1.6 21 50-70 369-389 (396)
199 1c1y_B Proto-onkogene serine/t 42.7 15 0.0005 21.0 1.9 20 2-21 16-35 (77)
200 3uv0_A Mutator 2, isoform B; F 42.7 3.8 0.00013 24.7 -0.6 18 41-63 64-81 (102)
201 2al3_A TUG long isoform; TUG U 42.6 19 0.00066 21.0 2.5 21 2-22 24-44 (90)
202 3r8n_D 30S ribosomal protein S 42.4 3.6 0.00012 27.4 -0.8 60 6-68 82-146 (205)
203 2fl8_A Baseplate structural pr 42.3 19 0.00064 27.8 3.0 33 36-72 218-250 (602)
204 3ai5_A Yeast enhanced green fl 41.7 48 0.0017 23.1 4.9 55 2-68 248-304 (307)
205 3v7o_A Minor nucleoprotein VP3 41.7 5.9 0.0002 27.0 0.2 60 3-73 36-96 (227)
206 2dls_A PDZ-rhogef, RHO guanine 41.5 12 0.0004 20.6 1.4 32 35-66 47-81 (93)
207 2l76_A Nfatc2-interacting prot 41.2 50 0.0017 19.4 4.2 49 7-69 40-92 (95)
208 1vct_A Hypothetical protein PH 41.1 32 0.0011 21.9 3.7 22 48-69 161-182 (205)
209 1ug1_A KIAA1010 protein; struc 40.7 25 0.00085 20.7 2.8 19 51-69 29-47 (92)
210 3hur_A Alanine racemase; struc 40.4 25 0.00084 25.1 3.3 31 39-69 301-340 (395)
211 1wgr_A Growth factor receptor- 39.9 13 0.00045 22.0 1.5 20 2-21 24-43 (100)
212 3kw3_A Alanine racemase; niaid 39.8 27 0.00093 24.6 3.4 30 39-68 303-344 (376)
213 2q8k_A Proliferation-associate 39.6 38 0.0013 24.0 4.2 29 38-66 84-115 (401)
214 2vsp_A PDZ domain-containing p 39.1 8 0.00028 21.1 0.4 32 35-66 45-80 (91)
215 2v31_A Ubiquitin-activating en 38.9 48 0.0017 19.8 4.0 39 28-66 8-50 (112)
216 1ni3_A YCHF GTPase, YCHF GTP-b 38.8 9 0.00031 27.4 0.8 17 50-66 371-387 (392)
217 3kmh_A D-lyxose isomerase; cup 38.7 27 0.00094 23.9 3.1 35 36-70 154-188 (246)
218 1pqs_A Cell division control p 38.7 22 0.00075 20.0 2.3 21 2-22 6-26 (77)
219 1ujx_A Polynucleotide kinase 3 38.5 2.9 0.0001 25.7 -1.6 26 42-69 80-105 (119)
220 4a3q_A Alanine racemase 1; iso 38.3 28 0.00095 24.6 3.2 31 39-69 295-334 (382)
221 4gdk_A Ubiquitin-like protein 37.9 37 0.0013 19.5 3.3 35 3-47 25-59 (91)
222 2xzm_9 RPS31E; ribosome, trans 37.1 7.1 0.00024 25.6 0.0 55 2-73 15-71 (189)
223 3g2b_A Coenzyme PQQ synthesis 36.4 23 0.00079 20.4 2.2 19 6-24 54-72 (95)
224 3h9d_A ATG8, microtubule-assoc 36.2 33 0.0011 20.7 3.0 34 3-46 53-86 (119)
225 2p3w_A Probable serine proteas 36.2 3.4 0.00012 23.7 -1.5 31 35-65 53-84 (112)
226 2kzr_A Ubiquitin thioesterase 36.0 30 0.001 18.8 2.6 18 4-21 17-34 (86)
227 3cdd_A Prophage MUSO2, 43 kDa 36.0 18 0.00061 24.9 1.9 62 7-69 116-183 (361)
228 3slz_A GAG-Pro-POL polyprotein 35.4 30 0.001 21.3 2.7 29 32-60 18-49 (132)
229 1v9f_A Ribosomal large subunit 35.1 8.1 0.00028 26.6 0.0 24 41-67 44-67 (325)
230 3w1s_C Ubiquitin-like protein 34.6 37 0.0013 19.6 2.9 31 3-46 28-58 (91)
231 3l4b_C TRKA K+ channel protien 33.9 40 0.0014 21.0 3.2 24 44-69 181-204 (218)
232 2kjp_A Uncharacterized protein 33.9 9 0.00031 21.4 0.1 32 35-66 18-53 (91)
233 1wxm_A A-RAF proto-oncogene se 33.9 17 0.00057 21.2 1.3 20 2-21 22-41 (86)
234 2l05_A Serine/threonine-protei 33.4 75 0.0026 18.7 5.2 20 2-21 32-51 (95)
235 3j20_D 30S ribosomal protein S 33.3 17 0.00059 23.6 1.4 28 41-71 130-161 (180)
236 4ecl_A Serine racemase, vantg; 33.3 36 0.0012 23.8 3.1 31 39-69 297-338 (374)
237 2wdq_B Succinate dehydrogenase 32.9 78 0.0027 20.2 4.6 55 2-60 25-81 (238)
238 3m95_A Autophagy related prote 32.7 39 0.0013 20.6 2.9 19 3-21 58-76 (125)
239 3d37_A Tail protein, 43 kDa; s 32.7 29 0.00098 24.2 2.5 64 6-69 109-179 (381)
240 2akl_A PHNA-like protein PA012 32.3 17 0.00057 23.0 1.1 16 52-67 71-86 (138)
241 1fmb_A EIAV protease; hydrolas 32.2 17 0.00057 21.4 1.1 16 36-51 8-23 (104)
242 3rui_B Autophagy-related prote 31.6 42 0.0014 20.2 2.9 18 4-21 53-70 (118)
243 2pkt_A PDZ and LIM domain prot 31.3 15 0.00051 19.9 0.7 32 35-66 45-80 (91)
244 2arc_A ARAC, arabinose operon 31.3 22 0.00075 20.6 1.5 31 39-69 41-71 (164)
245 4f87_A Plycb; lysin, bacteriop 30.7 41 0.0014 18.4 2.4 30 20-49 10-39 (72)
246 2vqc_A Hypothetical 13.2 kDa p 30.5 14 0.00046 22.2 0.5 24 3-26 42-65 (118)
247 2pzd_A Serine protease HTRA2; 30.5 4.8 0.00016 23.0 -1.5 32 35-66 53-85 (113)
248 1uit_A Human discs large 5 pro 30.4 17 0.00058 20.7 0.9 32 35-66 60-95 (117)
249 1nyr_A Threonyl-tRNA synthetas 29.4 16 0.00055 27.4 0.8 49 3-68 15-63 (645)
250 3qo6_A Protease DO-like 1, chl 29.2 17 0.00058 25.0 0.9 30 37-66 283-315 (348)
251 1pqh_A Aspartate 1-decarboxyla 29.0 64 0.0022 20.4 3.4 67 3-69 38-107 (143)
252 2w4f_A Protein LAP4; structura 28.9 26 0.00087 19.0 1.5 32 35-66 52-87 (97)
253 2xzm_D Ribosomal protein S4 co 28.7 21 0.00073 23.0 1.2 31 40-73 133-167 (181)
254 1wi2_A Riken cDNA 2700099C19; 28.5 5.3 0.00018 22.6 -1.6 30 37-66 62-93 (104)
255 3ix6_A TS, tsase, thymidylate 28.1 12 0.00042 26.8 0.0 59 4-73 37-96 (360)
256 1v70_A Probable antibiotics sy 28.1 41 0.0014 17.7 2.2 28 39-66 52-79 (105)
257 2i4s_A General secretion pathw 27.8 19 0.00064 20.3 0.7 32 35-66 55-90 (105)
258 3r68_A Na(+)/H(+) exchange reg 27.6 14 0.00048 20.1 0.2 30 37-66 50-82 (95)
259 4g65_A TRK system potassium up 27.6 51 0.0017 23.7 3.2 24 42-67 417-440 (461)
260 2cqj_A BRMS2, U3 small nucleol 27.5 14 0.00048 20.1 0.2 25 41-68 35-61 (71)
261 2kl1_A YLBL protein; structure 27.4 11 0.00036 21.1 -0.4 30 37-66 25-57 (94)
262 3ngh_A PDZ domain-containing p 27.1 20 0.00068 19.9 0.8 30 37-66 47-79 (106)
263 2opk_A Hypothetical protein; p 27.0 37 0.0013 19.2 2.0 29 38-66 55-85 (112)
264 3bpu_A Membrane-associated gua 26.7 14 0.00049 19.9 0.1 30 37-66 46-80 (88)
265 1rrb_A RAF-1 RBD, RAF proto-on 26.7 38 0.0013 20.4 2.0 19 2-20 33-51 (107)
266 4i4a_A Similar to unknown prot 26.6 29 0.00099 19.6 1.5 31 38-68 56-86 (128)
267 1v5l_A PDZ and LIM domain 3; a 26.6 12 0.0004 21.0 -0.3 30 37-66 50-82 (103)
268 1x5q_A LAP4 protein; PDZ domai 26.3 30 0.001 19.3 1.5 32 35-66 64-99 (110)
269 2he4_A Na(+)/H(+) exchange reg 26.2 23 0.00079 19.0 0.9 30 37-66 49-81 (90)
270 1uwy_A Carboxypeptidase M; met 26.1 1.3E+02 0.0044 21.3 5.1 40 9-48 283-322 (426)
271 3ny5_A Serine/threonine-protei 25.6 49 0.0017 19.6 2.3 19 2-20 28-46 (96)
272 3sfj_A TAX1-binding protein 3; 25.5 32 0.0011 18.9 1.5 32 35-66 63-99 (104)
273 1o5u_A Novel thermotoga mariti 25.3 29 0.001 19.7 1.3 31 38-68 51-82 (101)
274 2bye_A Phospholipase C, epsilo 25.2 67 0.0023 19.4 2.9 21 2-22 26-46 (110)
275 3vhx_B Kinesin-like protein KI 24.9 12 0.00039 23.2 -0.6 24 47-73 73-96 (120)
276 2ki8_A Tungsten formylmethanof 24.9 32 0.0011 21.0 1.5 26 40-70 54-79 (146)
277 2gu9_A Tetracenomycin polyketi 24.9 39 0.0013 18.2 1.8 30 38-67 46-75 (113)
278 2v90_A PDZ domain-containing p 24.6 13 0.00044 20.4 -0.4 32 35-66 48-83 (96)
279 1qf6_A THRRS, threonyl-tRNA sy 24.5 33 0.0011 25.8 1.8 49 3-68 13-61 (642)
280 2r2q_A Gamma-aminobutyric acid 24.4 74 0.0025 18.6 3.0 19 3-21 49-67 (110)
281 3evi_A Phosducin-like protein 24.3 89 0.003 17.9 3.4 49 8-56 39-94 (118)
282 2hah_A Protease, retropepsin; 24.3 21 0.00073 21.5 0.6 15 36-51 14-28 (116)
283 2fnj_B Transcription elongatio 24.3 63 0.0021 19.4 2.7 20 2-21 16-35 (118)
284 1iqo_A Hypothetical protein MT 24.0 35 0.0012 19.9 1.4 14 56-69 32-45 (88)
285 1eo6_A GATE-16, golgi-associat 23.9 70 0.0024 19.0 2.9 19 3-21 50-68 (117)
286 3lwc_A Uncharacterized protein 23.9 40 0.0014 19.6 1.8 29 38-66 61-89 (119)
287 2b8m_A Hypothetical protein MJ 23.9 56 0.0019 18.1 2.3 30 38-67 49-79 (117)
288 1q1o_A Cell division control p 23.9 36 0.0012 20.1 1.5 20 3-22 28-47 (98)
289 3num_A Serine protease HTRA1; 23.8 17 0.00057 24.8 0.0 32 35-66 272-304 (332)
290 3uf8_A Ubiquitin-like protein 23.4 1.5E+02 0.0052 18.9 5.2 59 3-72 36-95 (209)
291 1j0g_A Hypothetical protein 18 23.4 70 0.0024 18.6 2.6 56 2-69 28-86 (92)
292 2eeh_A PDZ domain-containing p 23.2 13 0.00045 20.6 -0.5 32 35-66 54-88 (100)
293 2ozj_A Cupin 2, conserved barr 23.1 43 0.0015 18.5 1.8 30 39-68 61-90 (114)
294 2i6v_A General secretion pathw 23.0 16 0.00054 19.9 -0.2 30 37-66 40-72 (87)
295 3h8u_A Uncharacterized conserv 22.6 39 0.0013 19.0 1.5 28 39-66 63-91 (125)
296 3d82_A Cupin 2, conserved barr 22.6 34 0.0012 18.2 1.2 29 38-66 52-80 (102)
297 2h2b_A Tight junction protein 22.6 40 0.0014 18.6 1.5 33 34-66 55-91 (107)
298 1dtc_A Acetyl-delta-toxin; NMR 22.5 28 0.00095 15.8 0.6 17 8-24 7-23 (26)
299 2j0j_A Focal adhesion kinase 1 22.5 53 0.0018 24.4 2.5 28 2-29 26-53 (656)
300 3sqf_A Protease; folded monome 22.5 33 0.0011 20.8 1.2 16 36-51 9-24 (114)
301 2oyn_A Hypothetical protein MJ 22.2 41 0.0014 21.2 1.6 11 57-67 121-131 (146)
302 2p1g_A Putative xylanase; stru 22.0 59 0.002 22.1 2.5 17 56-72 170-186 (249)
303 2aef_A Calcium-gated potassium 21.9 1.1E+02 0.0037 19.1 3.7 17 52-68 200-216 (234)
304 1d2z_A Death domain of pelle; 21.9 53 0.0018 19.4 2.0 15 6-20 73-87 (108)
305 2yub_A LIMK-2, LIM domain kina 21.8 15 0.00051 21.5 -0.5 15 37-51 67-81 (118)
306 2l97_A HTRA, putative serine p 21.6 18 0.0006 21.5 -0.2 33 34-66 73-109 (134)
307 2vl6_A SSO MCM N-TER, minichro 21.3 1.1E+02 0.0038 20.1 3.7 29 32-67 206-234 (268)
308 4h4j_A Hypothetical protein; P 21.3 62 0.0021 21.7 2.5 17 56-72 169-185 (240)
309 2nw5_A Methionine aminopeptida 21.3 1.7E+02 0.0058 20.4 4.8 60 4-66 68-131 (360)
310 3i18_A LMO2051 protein; alpha- 21.1 21 0.00071 19.9 0.0 30 37-66 27-59 (100)
311 1ltl_A DNA replication initiat 20.9 1.1E+02 0.0039 20.3 3.8 29 32-67 193-221 (279)
312 1p94_A Plasmid partition prote 20.8 56 0.0019 18.1 1.9 16 6-21 56-71 (76)
313 2a9i_A IRAK-4, interleukin-1 r 20.8 59 0.002 19.3 2.1 15 6-20 77-91 (113)
314 2jil_A GRIP1 protein, glutamat 20.7 18 0.00061 19.8 -0.3 16 35-50 51-67 (97)
315 1o0x_A Methionine aminopeptida 20.7 1.8E+02 0.0062 18.8 6.0 62 4-66 43-106 (262)
316 2yt7_A Amyloid beta A4 precurs 20.6 20 0.00068 20.0 -0.1 34 33-66 54-93 (101)
317 2d90_A PDZ domain containing p 20.4 17 0.00058 20.2 -0.4 30 37-66 51-83 (102)
318 2hga_A Conserved protein MTH13 20.3 27 0.00093 20.6 0.5 29 38-66 46-77 (125)
319 1lcy_A HTRA2 serine protease; 20.3 20 0.00069 24.3 -0.1 32 35-66 274-306 (325)
320 3k1r_A Harmonin; protein-prote 20.3 24 0.00084 22.0 0.3 32 35-66 128-162 (192)
321 3fio_A A cystathionine beta-sy 20.2 70 0.0024 15.7 2.1 19 3-21 4-22 (70)
322 3ka2_A [L-Ala51;Gly51']HIV-1 p 20.0 63 0.0022 21.3 2.3 25 36-60 8-35 (203)
No 1
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=99.95 E-value=5.5e-29 Score=155.96 Aligned_cols=72 Identities=57% Similarity=1.089 Sum_probs=68.1
Q ss_pred cccC---ccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLT---FQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~---~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++ ++.||++||++|+++||++++++|+++|++|++|+|+|||+||++++|++|+|+|||+|+||||+|||
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECSCCC
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCCCCC
Confidence 5666 34799999999999999999999999999999999999999999999999999999999999999998
No 2
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=99.94 E-value=6.2e-28 Score=150.52 Aligned_cols=72 Identities=46% Similarity=0.796 Sum_probs=67.7
Q ss_pred cccC----ccCcHHHHHHHHHHhcCcccccccccCC--cccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLT----FQLIMKDLLSWVGTNLIKERPEMFMKGD--SVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~----~~~TV~~ll~~L~~~~~~~~~~l~~~~g--~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++| ++.||++||++|+++||++++++|.++| ++||+|+|+|||+||++++|++|+|++||+|+||||+|||
T Consensus 25 v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 25 LQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp ECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEECCCCC
T ss_pred EEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCCCccc
Confidence 5667 3469999999999999999999999888 8999999999999999999999999999999999999998
No 3
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=99.92 E-value=1.5e-25 Score=136.20 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=67.6
Q ss_pred cccC--ccCcHHHHHHHHHHhcCcccccc--cccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLT--FQLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~--~~~TV~~ll~~L~~~~~~~~~~l--~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++ ++.||++|++.|.++||+.++++ |.++|++|++++|+||+++|+++++.+|+|++||+|+||||+|||
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEECTTCC
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEECCCCCC
Confidence 3566 78999999999999999887788 988999999999999999999999999999999999999999998
No 4
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=99.91 E-value=1.7e-24 Score=129.58 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=66.2
Q ss_pred CccCcHHHHHHHHHHhcCccccccccc--CCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 5 TFQLIMKDLLSWVGTNLIKERPEMFMK--GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 5 ~~~~TV~~ll~~L~~~~~~~~~~l~~~--~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.||++|++.|.++||++++.+|++ +|++|++++|+||+++|+++++.+|+|++||+|+||||+|||
T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEECCTTC
T ss_pred cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECCCCCC
Confidence 467999999999999999999999986 899999999999999999999999999999999999999998
No 5
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=99.89 E-value=3.7e-23 Score=122.69 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=64.5
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++++||++|++.|..+||++++++|+++|++|++++|+||++.++. +|+|++||+|+||||++||
T Consensus 22 ~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 22 VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT----TSBCCTTCEEEEECCCSCC
T ss_pred EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC----CcccCCCCEEEEECCCCCC
Confidence 5788899999999999999999998899999999999999999999974 8999999999999999998
No 6
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=99.87 E-value=2.8e-22 Score=118.47 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=66.8
Q ss_pred cccCccCcHHHHHHHHHHhcCccccc-ccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++.+.||++|++.|..+||++++. +|+++| +++.+.|+|||+.++++++.+|+|++||+|+||||++||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccCCCCcCCCCCCEEEEeCCCCCC
Confidence 35667899999999999999999888 898888 999999999999999999999999999999999999998
No 7
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=99.85 E-value=2.1e-21 Score=117.50 Aligned_cols=68 Identities=25% Similarity=0.293 Sum_probs=61.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++.||++|++.|..+||++++.+|+++|++++.+.|+|||+.+. .+|+|++||+|+||||++||
T Consensus 31 ~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~----~~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 31 IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----WDEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----TTCBCCTTCEEEEESCC---
T ss_pred EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC----CCCCCCCCCEEEEECCCCCC
Confidence 467889999999999999999999999999999999999999999996 48999999999999999998
No 8
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=99.84 E-value=3.1e-21 Score=117.24 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=64.7
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCce-------EEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGV-------LVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v-------~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++ +.||+||++.|..+||++++.+| ++|++|+++ +|+|||+.|+++++.+|+|++||+|+||||++||
T Consensus 24 ~l~-~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 24 PLS-GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp EEE-CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECCCSCC
T ss_pred EEe-CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECCCCCC
Confidence 444 78999999999999999988888 788999999 9999999999999999999999999999999998
No 9
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=99.75 E-value=1.1e-18 Score=115.08 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=64.2
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++. .||++|++.|..+||.+++.+|+++ .++++++|+|||+.+..+++.+|+|++||+|+||||++||
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~-~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGE-GLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETT-EECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSCCSE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhccc-ccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECccccc
Confidence 35665 9999999999999999998888654 5999999999999999999999999999999999999998
No 10
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=99.66 E-value=9.6e-17 Score=93.04 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=51.2
Q ss_pred CccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 5 TFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 5 ~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.||++|++.|..+||++++.+ . .+ .+.|+||++.+. .+|+|++||+|+||||++||
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l-~-~~----~~~v~vN~~~v~----~~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALAL-E-DG----KLLAAVNQTLVS----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHH-C-CT----TCEEEETTEECC----TTCBCCTTCEEEEECCCCCC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHh-c-CC----CEEEEECCEECC----CCCCCCCCCEEEEeCCCCCC
Confidence 678999999999999999887655 2 22 468999999885 58999999999999999998
No 11
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=99.66 E-value=1.7e-16 Score=91.55 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=49.7
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++ +++||++|++.|..+ |++++.+ +.+.|+||++.|. +.+|+|++||+|+||||++||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~-~~l~~~l--------~~~~vavN~~~v~---~~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEK-EGLKEWL--------GVCAIALNDHLID---NLNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTC-TTTTTTT--------TTCEEEESSSEEC---CTTCCCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHC-cCHHHHh--------hccEEEECCEEcC---CCCcCCCCCCEEEEECCCCCC
Confidence 466 789999999999975 6554332 4799999999974 579999999999999999998
No 12
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=99.61 E-value=9.1e-16 Score=88.26 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=49.9
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++.||.+|++.|..+||+++ .+ .+.|+|||+.+.. +|+|++||+|+||||++||
T Consensus 20 ~~~~~~~tv~~ll~~l~~~~p~~~--------~v--~~~v~vNg~~v~~----~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 20 IVLEQALTVQQFEDLLFERYPQIN--------NK--KFQVAVNEEFVQK----SDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp CCCSSCEEHHHHHHHHHHHCGGGT--------TC--CCEEEETTEEECT----TSEECTTCEEEEECSCCCC
T ss_pred EECCCCCCHHHHHHHHHHHCcchh--------cc--eEEEEECCEECCC----CCCcCCCCEEEEECCCCCC
Confidence 467889999999999999998642 12 3589999999874 7999999999999999998
No 13
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=99.54 E-value=2.5e-15 Score=85.00 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=50.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++.||.+|++.|. ++ ++.+.|.||++.+...+..+|+|++||+|+||||++||
T Consensus 10 ~~~~~~~tv~~ll~~l~--~~-------------~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQLD--QR-------------QAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ECCCTTCCHHHHHHHHT--CC-------------CSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred EEcCCCCcHHHHHHHcC--CC-------------CCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence 46789999999999983 11 35789999999999888889999999999999999998
No 14
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=99.53 E-value=1e-14 Score=82.13 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=48.5
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++ ++.||.+|++.|. ++ ++.+.|.+|++-+...++.+|+|++||+|+||||++||
T Consensus 9 ~~~-~~~tv~~ll~~l~--~~-------------~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEMG--VE-------------LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ECC-TTCCHHHHHHHHT--BC-------------GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred EEc-CCCcHHHHHHHcC--CC-------------CCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence 456 7899999999984 11 35788999999999999999999999999999999998
No 15
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=99.40 E-value=2.8e-13 Score=81.15 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=48.5
Q ss_pred cccCcc-CcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQ-LIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~-~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++ .||.+||+.|. ++ ...+.|.||++-+...+..+|+|++||+|.|||||+||
T Consensus 30 ~el~~~~~Tv~dLL~~L~--~~-------------~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASYQ--LE-------------NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ECCSSSCCBHHHHHHHTT--CT-------------TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred EECCCCCCcHHHHHHHhC--CC-------------CCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence 467888 99999999883 11 24678999999999888889999999999999999998
No 16
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=99.32 E-value=3.9e-13 Score=78.06 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.8
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++.||.+|++.|. ++ .+.+.|.|||+-+.. +|+|++||+|+||||++||
T Consensus 25 ~~~~~~~Tv~dLl~~L~--~~-------------~~~v~VavNg~~v~~----~~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG--FN-------------TESAIAKVNGKVVLE----DDEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHTTT--CS-------------SCSSCEEETTEEECS----SSCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHHHhC--CC-------------CcCEEEEECCEECCC----CCCcCCCCEEEEEcccccC
Confidence 57788999999999875 21 235679999999864 6999999999999999998
No 17
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=99.24 E-value=2e-11 Score=69.73 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=44.2
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++++.|+.+|++.|. + . ...+.|.+|++-+.. +++|++||+|+||||++||
T Consensus 18 ~~~~~~~tv~~Ll~~l~--~--------~-----~~~v~vavN~~~v~~----~~~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELE--I--------P-----IETVVVKKNGQIVID----EEEIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEESSCCBHHHHHHHTT--C--------C-----TTTEEEEETTEECCT----TSBCCTTCEEEEEECTTCC
T ss_pred EECCCCCcHHHHHHHhC--C--------C-----CCCEEEEECCEECCC----cccCCCCCEEEEEeccccC
Confidence 57788999999999873 1 1 235789999998864 5699999999999999998
No 18
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=99.04 E-value=2.4e-10 Score=66.03 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=46.9
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
.++ ++.||.+||+.|. ++ ...+.|.+||+-+..-+..+|+|++||.|.|||+++||
T Consensus 10 ~e~-~~~Tl~~LL~~l~--~~-------------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 10 REV-QSASVAALMTELD--CT-------------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp ECC-CCSBHHHHHHHTT--CC-------------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEc-CCCcHHHHHHHcC--CC-------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 356 7899999999763 11 13678999999998888889999999999999999998
No 19
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=98.97 E-value=2.2e-10 Score=66.97 Aligned_cols=58 Identities=26% Similarity=0.237 Sum_probs=48.0
Q ss_pred cccC--ccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLT--FQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~--~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
.+++ ++.||.+||+.|. ++. ...+.|.+||+-+..-+..+|+|++||.|.|||+++||
T Consensus 10 ~e~~~~~~~Tl~~LL~~l~--~~~------------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 10 STVDGAESLNVTELLSALK--VAQ------------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EECSSCSCEEHHHHHHHHT--CSC------------TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred EEcCCCCCCcHHHHHHHcC--CCC------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 3566 8899999999874 210 23577999999998877778999999999999999998
No 20
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=98.59 E-value=2.8e-08 Score=57.44 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=40.7
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++++|++|||+.|. +.. ..+.|++||+.+.. +..+ +||.|.|++.++||
T Consensus 15 ~ev~~g~Tv~dLL~~Lg----------l~~-----~~VvV~vNG~~v~~----d~~l-~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 15 VAVDDDGTYADLVRAVD----------LSP-----HEVTVLVDGRPVPE----DQSV-EVDRVKVLRLIKGG 66 (74)
T ss_dssp EECSTTCSHHHHHHTTC----------CCS-----SCCCEECCCCCCCT----TSSS-CCCCEEECSSCSCC
T ss_pred EEcCCCCcHHHHHHHcC----------CCc-----ceEEEEECCEECCH----HHCC-CCCEEEEEEeeccc
Confidence 57899999999998653 111 14569999998864 4455 59999999999998
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=98.55 E-value=8.7e-08 Score=58.15 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=44.6
Q ss_pred cccCccCcHHHHHHHHHH--hcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 2 LSLTFQLIMKDLLSWVGT--NLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~--~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
+++++|+||.++|+.+.- .+|+..- ..+.|.|||+-+. .+|+|++||.|.|+||+
T Consensus 30 ~~v~~g~TV~daI~~~gi~~~~peIdl----------~~~~V~Vng~~v~----~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 30 FQVDEGITVQTAITQSGILSQFPEIDL----------STNKIGIFSRPIK----LTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEETTCBHHHHHHHHTHHHHCTTCCT----------TTSEEEEEECSCC----TTCBCCTTCEEEECCCC
T ss_pred EEcCCCCcHHHHHHHcCCCccCCcccc----------cccEEEEcCEECC----CCccCCCCCEEEEEecc
Confidence 578999999999999854 5554311 1457999999987 69999999999999997
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.63 E-value=5.9e-05 Score=41.89 Aligned_cols=54 Identities=19% Similarity=0.001 Sum_probs=40.6
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG 72 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaG 72 (73)
.+++.|+|+.|+++.+...++ +..+.+.|||+-+. ++|+|++||.|.|++....
T Consensus 13 ~~~~~g~T~~dla~~i~~~l~-------------~~~vaa~vNg~lvd----l~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 13 KRLPQGATALDFAYSLHSDLG-------------DHCIGAKVNHKLVP----LSYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp EEECTTCBHHHHHHHHCSHHH-------------HTEEEEEETTEECC----TTCBCCSSSBEEEEECCCC
T ss_pred EEcCCCCcHHHHHHHHhhccc-------------cceEEEEECCEEeC----CCcCcCCCCEEEEEECCCC
Confidence 367889999999987743221 12466789998765 4799999999999987653
No 23
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.63 E-value=4e-05 Score=44.53 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=38.9
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+++|.|+|+.|+...+. +++.++ .+-..|||+.+. ++|+|++||.|.|+.+
T Consensus 18 ~~lp~GaT~~D~A~~Ih---~~lg~~----------~v~AkVNG~~v~----L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 18 ISLPIGSTVIDFAYAIH---SAVGNR----------MIGAKVDGRIVP----IDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEETTCBHHHHHHHHC---HHHHHT----------EEEEEETTEEEC----TTCBCCTTCBEEEEEC
T ss_pred EEecCCCCHHHHHHHhh---hhhhcc----------eEEEEECCEEcC----CCcccCCCCEEEEEcc
Confidence 57899999999887763 333322 244677998876 4899999999999864
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.83 E-value=0.032 Score=30.05 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=39.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+ .+-+++.+ .++-+++|+.|.++...-||
T Consensus 15 i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-g~------~L~d~~tL-----~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTL-----SDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTCBT-----GGGTCCTTCEEEEEECCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-Ce------ECCCCCcH-----HHcCCCCCCEEEEEEeCCCC
Confidence 56788899999999999876 2222233321 21 11122222 24568899999999999998
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=95.71 E-value=0.033 Score=30.00 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=37.6
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+ .+-+++.+ .++.+++|+.|.++....||
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-g~------~L~d~~tL-----~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYS-GK------QMNDEKTA-----ADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSBG-----GGGTCCTTCEEEEEECCC--
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCCCcH-----HHcCCCCCCEEEEEEeCCCC
Confidence 56788899999999999876 3222233321 21 11122222 24578999999999999988
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.42 E-value=0.051 Score=30.03 Aligned_cols=60 Identities=10% Similarity=0.209 Sum_probs=37.8
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.++++. |..+.+|+- .|+ .+-++.. |. ++.+++|++|.++...-||
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~------~L~d~~t---L~--~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---LS--DYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TBE------ECCTTCB---TT--TTTCCTTCEEEEEECCC--
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CCe------ECCCCCC---HH--HCCCCCCCEEEEEEeccCC
Confidence 56788899999999999876 332333332 221 1222222 22 5578999999999888776
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=95.28 E-value=0.055 Score=29.83 Aligned_cols=60 Identities=10% Similarity=0.206 Sum_probs=38.8
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+- .|+ ++-+++.+. ++.+++|+.|.++...-||
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~------~L~d~~tL~-----~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTSBTG-----GGTCCTTCEEEEECCCCCC
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCCCCHH-----HcCCCCCCEEEEEEECcCC
Confidence 56778899999999999876 322333332 121 122222222 4568999999999888876
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.57 E-value=0.092 Score=29.19 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=39.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.+++.. |..+.+|+- .|+ .+-+++.+. ++.+++|+.|.++-.+-||
T Consensus 27 ~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~tL~-----~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 27 IDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKTAA-----DYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTSBGG-----GGTCCTTCEEEECCCCCCC
T ss_pred EEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCe------ECCCCCcHH-----HcCCCCCCEEEEEEeCCCC
Confidence 56778899999999998876 322333332 222 122332222 5578999999999999988
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.54 E-value=0.097 Score=29.69 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=35.2
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+ ++-+++.+. ++.+++|+.|.++...-||
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk------~L~D~~tL~-----~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCTTSBSG-----GGTCCTTCEEEEEC-----
T ss_pred EEECCCChHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCCCcHH-----HcCCCCCCEEEEEEeCCCC
Confidence 57788899999999998876 3333333322 22 122222222 4568999999999888886
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.18 E-value=0.074 Score=29.66 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=38.3
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.++++. |..+.+|+- .|+ .+-+++.+. ++.+++|+.|.++....||
T Consensus 22 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk------~L~d~~tL~-----~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 22 YAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQ------VLQDWLGLG-----IYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTE------ECCSSSBHH-----HHTCCTTEEEEEEECSCCC
T ss_pred EEeCCCChHHHHHHHHHHHhCCChHHEEEEE-CCE------EccCCCCHH-----HCCCCCCCEEEEEEeccCC
Confidence 56778899999999999876 222222322 121 111222221 4468899999999998887
No 31
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=94.17 E-value=0.11 Score=31.09 Aligned_cols=51 Identities=31% Similarity=0.339 Sum_probs=35.1
Q ss_pred ccc-CccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEE-------cCccccccCCccCccCCCCEEEEEec
Q 035093 2 LSL-TFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLV-------NDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l-~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilv-------Ng~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+-| +.|+||.|+-..+-+...+ + +..-+| |++.+ |++++|+|+|.|.|+..
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~---~----------fkyA~VwG~saK~~~qrV----gldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIK---E----------FKYALVWGLSVKHNPQKV----GKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTT---T----------EEEEEEBSTTSSSSSEEE----CSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHHHh---h----------ccEEEEecccccCCCEEC----CCCcEecCCCEEEEEeC
Confidence 346 8899999998877554422 1 122233 55554 57999999999999865
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=94.03 E-value=0.17 Score=28.74 Aligned_cols=60 Identities=8% Similarity=0.163 Sum_probs=38.4
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.+++.. |..+.+|+- .|+ ++-++..+. ++-+++|+.|.++...-||
T Consensus 16 ~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~-~G~------~L~d~~tL~-----~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 16 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSBTG-----GGTCCTTCEEEEEECCCC-
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhHEEEEE-CCE------ECCCCCcHH-----HcCCCCCCEEEEEEEcCCC
Confidence 56788899999999998876 222223332 222 122333222 4568999999999888776
No 33
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.15 Score=29.46 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=40.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.++++. |..+.+|+- .|+ ++-+++.+. ++.+++|+.|.++-.+-||
T Consensus 37 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~tL~-----~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 37 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCBSG-----GGTCCTTEEEEEECBCSCC
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCE------ECCCCCcHH-----HCCCCCCCEEEEEEecCCC
Confidence 56788899999999999876 322333332 222 122332222 5578999999999999887
No 34
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=93.72 E-value=0.25 Score=28.30 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=38.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+. .|+ .+-+++.+. ++.+++|+.|.++....||
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~-~Gk------~L~D~~tL~-----~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCGGGEEEEE-TTE------ECCTTSBTG-----GGTCCTTCEEEEEECCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCCCCHH-----HcCCCCCCEEEEEEeCCCC
Confidence 56788899999999999876 222222322 121 111222222 4568899999999888776
No 35
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=93.33 E-value=0.27 Score=27.75 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=37.4
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|=+.+.+.. |..+.+|+- .|+ ++-|++.+. ++.+++|+.|.++-..-||
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~tL~-----~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKTAA-----DYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTSBTT-----TTTCCTTCEEEEECBCC--
T ss_pred EEECCCCCHHHHHHHHHHHHCcChhHEEEEE-CCe------ECCCCCcHH-----HcCCCCCCEEEEEEECCCC
Confidence 57788899999999998876 322333332 121 122322222 5678999999999887776
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.29 E-value=0.15 Score=29.31 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=39.4
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.++++. |..+.+|+-. |+ .+-+++.+. ++.+++|+.|.++...-||
T Consensus 32 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 32 FEVTGQETVAQIKAHVASLEGIAPEDQVVLLA-GA------PLEDEATLG-----QCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp EECCSSCBHHHHHHHHHHHHTCCGGGCEEEET-TE------ECCTTSBHH-----HHTCCSSCEEEEECCCCCC
T ss_pred EEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC-CE------ECCCCCcHH-----HCCCCCCCEEEEEEecCCC
Confidence 57788899999999998876 3223333322 22 122222221 4568999999999999988
No 37
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=93.06 E-value=0.28 Score=28.94 Aligned_cols=60 Identities=10% Similarity=0.215 Sum_probs=37.7
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.+++.. |..+.+|+- .|+ .+-+++. |. +..+++|+.|.++...-||
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L~--~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---LS--DYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCSSCB---TT--TTTCCTTCEEEEEECCCC-
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCCCc---HH--HcCCCCCCEEEEEEeCCCC
Confidence 56778899999999998876 222222322 121 1222222 22 4568899999999999988
No 38
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=92.97 E-value=0.047 Score=31.07 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccCc-cCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTF-QLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~-~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++. ++|+.|+.+.+.. .+.+. -+...|||+-++ ++++|++++.|.|+.
T Consensus 23 ~~~~~~~T~~dia~~i~~---~l~~~----------~vaakvNg~l~d----L~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 23 DAESWKTTPYQIACGISQ---GLADN----------TVIAKVNNVVWD----LDRPLEEDCTLELLK 72 (88)
T ss_dssp EEETTTCCHHHHHHHSST---TTGGG----------CCCEEESSSEEC----SSSCCCSSEEEEECS
T ss_pred EcccCCCCHHHHHHHhhh---ccccc----------eEEEEECCEEEC----CCcCcCCCCEEEEEe
Confidence 4465 7888887765532 22222 345678998665 789999999998864
No 39
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=92.45 E-value=0.36 Score=28.56 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=39.2
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.++++. |..+.+|+- .|+ ++-+++.+. ++.+++|+.|.++-.+-||
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~tL~-----~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSBTT-----TTTCCTTCEEEEEECCCC-
T ss_pred EEeCCCCCHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCCcHH-----HCCCCCCCEEEEEEecCCC
Confidence 56778899999999999876 332333332 222 122333222 4578999999999999887
No 40
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.22 E-value=0.28 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=37.5
Q ss_pred ccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 3 SLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
++++..||.+|-+.+.+.. |..+.+|+.. |+ .+-+++.+. ++.+++|+.|.++....||
T Consensus 25 ~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~-gk------~L~d~~tL~-----~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 25 DVSRKATIEELRERVWALFDVRPECQRLFYR-GK------QLENGYTLF-----DYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EECTTCBHHHHHHHHHHHSCCCTTTEEEEET-TE------ECCSSSBHH-----HHTCCTTCEEEEEECCCCS
T ss_pred ecCCCCCHHHHHHHHHHHHCcChhhEEEEEC-Ce------ECCCCCCHH-----HCCCCCCCEEEEEEeCCCC
Confidence 3788899999999999876 2222233321 21 111222221 4568999999999888776
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=92.17 E-value=0.22 Score=28.07 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=35.3
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+. +-+++.+. ++.+++|+.|.++-...||
T Consensus 19 ~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk~------L~D~~tL~-----~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE-GKP------LEDQLPLG-----EYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEESSSBHHHHHHHHHHHTCSCTTTEEEESS-SSC------CCTTSBHH-----HHHCSTTCEEEEEEC----
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHEEEEEC-CEE------CCCCCcHH-----HcCCCCCCEEEEEEEcCCC
Confidence 56778899999999998876 3333333322 221 11222221 4568899999998887776
No 42
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=92.11 E-value=0.11 Score=32.14 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=21.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.++.-.+..++|++||+|.|
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEE
T ss_pred eEECCEEcccCCCCEEECCCCCEEEE
Confidence 68899987555667789999999986
No 43
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=92.10 E-value=0.082 Score=32.59 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.5
Q ss_pred EEEEcCccccccCCccCccCCCCEEEE
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
-++|||+.|. ..++|++||.|.|
T Consensus 91 gt~VNG~~V~----~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVS----SPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECC----SCEEECTTCEEEE
T ss_pred CEEECCEEcC----CcEECCCCCEEEE
Confidence 4899999996 2589999999987
No 44
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.91 E-value=0.28 Score=28.51 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=38.2
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+.+.. |..+.+|+.. |+ +|-|+.. .| .++.+++|+.|.+.-...||
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-gk------~L~D~~~--tL--~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYM-EQ------LLTDDHC--SL--GSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBCEEET-TE------EECCSSS--BH--HHHTCCTTEEEEECBCCCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC-CE------ECCCCcc--cH--HHCCCCCCCEEEEEECCCCC
Confidence 57788899999999999876 3333344322 21 2222211 11 14568899999998776665
No 45
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=91.29 E-value=0.13 Score=32.52 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=19.1
Q ss_pred EEEEcCccccccCCccCccCCCCEEEE
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
-++|||+.|. ..+.|++||+|.|
T Consensus 111 gt~VNG~~i~----~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVT----EPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECC----SCEECCTTCEEEE
T ss_pred ceEECCEEcC----CceECCCCCEEEE
Confidence 3889999984 2578999999987
No 46
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.27 E-value=0.6 Score=27.44 Aligned_cols=60 Identities=5% Similarity=0.092 Sum_probs=39.5
Q ss_pred cccCc-cCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTF-QLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~-~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++ ..||.+|=+.+.+.. |..+.+|+. .|+ ++-+++.+ . ++.+++|+.|.++-..-||
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~tL---~--~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAG------FLKDNMSL---A--HYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSS------BCCTTSBT---T--TTTCSSSCEEEEECSSCCS
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCCCcH---H--HCCCCCCCEEEEEEEcCCC
Confidence 56776 899999999998876 333334433 222 12222222 2 5678999999999888887
No 47
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.27 E-value=0.42 Score=27.51 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=38.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcC-ccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVND-CDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg-~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|=+.+.+.. |..+.+|+-. |+ +|-++ +.+. ++.+++|+.|.++-...||
T Consensus 29 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~~tL~-----~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 29 VEVDRTETVSSLKDKIHIVENTPIKRMQLYYS-GI------ELADDYRNLN-----EYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEECTTCBHHHHHHHHHHHSSSCTTTEEEEET-TE------EECCTTSBHH-----HHTCCTTEEEEEEECCCSS
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-CE------ECCCCcccHH-----HCCCCCCCEEEEEEeCCCC
Confidence 57788899999999999875 3333333322 21 22233 2222 4568999999998887776
No 48
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=91.03 E-value=0.17 Score=27.68 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=37.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.++-+.++++..--. ....++-+|+..+.-.= .++-+++||.|.++-..-||
T Consensus 18 ~~v~~~~tv~~lk~~i~~~~gi~~-----------~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 18 FKVKMTTHLKKLKESYCQRQGVPM-----------NSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEECCCChHHHHHHHHHHHHCCCc-----------ccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 456778899999999988652100 01222334543321100 13468899999999998887
No 49
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=91.00 E-value=0.14 Score=30.78 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=19.3
Q ss_pred EEEEcCccccccCCccCccCCCCEEEEE
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
-++|||+.+. ..++|++||+|.|=
T Consensus 81 gt~vNg~~i~----~~~~L~~GD~I~iG 104 (120)
T 1wln_A 81 ETYVDGQRIS----ETTMLQSGMRLQFG 104 (120)
T ss_dssp CEEETSCBCS----SCEEECTTCEEEET
T ss_pred CEEECCEEcC----CCEECCCCCEEEEC
Confidence 3688999986 35799999999873
No 50
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=90.98 E-value=0.81 Score=27.21 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=38.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+ .+-+++. |. ++.+++|+.|.++-...||
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~t---L~--~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA-GK------QLEDGRT---LS--DYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTCB---TT--TTTCCSSCEEEEEECCCSS
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCCCc---HH--HCCCCCCCEEEEEEEcCCC
Confidence 57788899999999998876 3333333322 22 1222222 22 5678899999998887776
No 51
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=90.87 E-value=1 Score=26.05 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=40.0
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~PpvaGG 73 (73)
+.+....+++.|.++.+++..-- ...+..+-+|+.+..-+=. +.-+++||+|.++...-||
T Consensus 20 ~~vk~~t~l~kl~~~y~~~~gi~-----------~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 20 FKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEETTSCTHHHHHHHHHHTTCC-----------STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEECCCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 44566788999999988865311 1245556677776432111 2257899999999877766
No 52
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=90.86 E-value=0.83 Score=26.65 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=36.0
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccC-CccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~-g~~t~l~dgD~V~i~ 67 (73)
++++..+||.+|+++.|.+..-... ..|..+..|..++.-+ =.|+.++|||.|..+
T Consensus 24 f~I~~~t~v~kLi~ayc~~~~I~~~----------~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 24 LSIPVDFTVKDLIKRYCTEVKISFH----------ERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCCC----------TTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred EEecCCCCHHHHHHHHHHHcCCCcC----------ceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 5788899999999999987732211 1233344444443321 136789999999764
No 53
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=90.58 E-value=0.84 Score=24.37 Aligned_cols=57 Identities=7% Similarity=0.112 Sum_probs=34.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
+++++..||.+|-+.+.+.. |..+.+|+-. |+ .+-|++.+. ++.+++|+.|.++..-
T Consensus 18 ~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-gk------~L~d~~tL~-----~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYS-GK------ILKDDQTVE-----SYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSBTG-----GGTCCTTCEEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC-Ce------EcCCCCCHH-----HcCCCCCCEEEEEEcC
Confidence 56788899999999998876 3223333322 21 122332222 4568899999887643
No 54
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=90.47 E-value=0.82 Score=24.78 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=37.2
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG 72 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaG 72 (73)
+++++..||.+|=+.+.+.. |..+.+|+-. |+ .+-+++.+. ++-+++|+.|.++-.+-|
T Consensus 19 ~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~-G~------~L~d~~tL~-----~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE-GK------PLEDQLPLG-----EYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET-TE------ECCTTSBGG-----GGTCCTTCEEEEEECCBC
T ss_pred EEECCcChHHHHHHHHHhhcCCCHHHEEEEEC-CE------ECCCCCcHH-----HCCCCCCCEEEEEEecCC
Confidence 56788899999999998776 3333333322 21 122222222 567899999999877655
No 55
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=90.30 E-value=0.2 Score=30.82 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.8
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.|. .+..++|++||+|.|
T Consensus 96 T~vNg~ri~--~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 96 TFLNKTRIP--PRTYCRVHVGHVVRF 119 (130)
T ss_dssp EEETTEECC--TTCCEECCTTCEEEE
T ss_pred eEECCEECC--CCceeECCCCCEEEE
Confidence 677999885 334568999999987
No 56
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.12 E-value=0.76 Score=26.67 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=40.2
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
+++....+++.|.++.+++..-- ...+..+-+|+.+..-+= .+.-+++||+|.++...-||
T Consensus 22 ~~v~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 22 FKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEECCCCHHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45566789999999998876321 124455667776643211 12368899999999876665
No 57
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=90.01 E-value=0.23 Score=32.65 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=36.9
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.+++.|+|+.|+.+.+.... .+ +-+...|||+-++ ++++|++++.|.++-
T Consensus 12 ~~~~~g~T~~dia~~i~~~l---~~----------~~vaakvNg~l~d----L~~~l~~~~~ve~it 61 (224)
T 1tke_A 12 RHYDHAVSPMDVALDIGPGL---AK----------ACIAGRVNGELVD----ACDLIENDAQLSIIT 61 (224)
T ss_dssp EECSSCBCHHHHHHHHCHHH---HH----------HCCEEEETTEEEE----TTCCBCSCEEEEEEC
T ss_pred EEecCCCCHHHHHHHHhhhc---cc----------ceEEEEECCEEec----cceEcCCCCeEEEEe
Confidence 36788999999988775432 11 2355778998765 589999999998864
No 58
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=89.92 E-value=0.33 Score=27.97 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=38.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.++++..--. ....++-+|+....-.- .++-+++||.|.++-..-||
T Consensus 36 l~v~~~~tv~~lK~~i~~~~gip~-----------~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 36 FKVKMTTHLKKLKESYCQRQGVPM-----------NSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEECCCCcHHHHHHHHHHHHCCCh-----------hhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 456678899999999988762110 01223334443321100 14468999999999999887
No 59
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=89.75 E-value=1.1 Score=25.91 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=38.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~PpvaGG 73 (73)
+.+....+++.|.++.+++..-- ...+.++-+|+.+..-+=. +.-+++||+|.++...-||
T Consensus 32 ~~v~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 32 FKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEETTSCHHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEccCCHHHHHHHHHHHHhCCC-----------ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 34556678999999988876321 1245566677776532111 2357899999999988776
No 60
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=89.61 E-value=0.93 Score=27.18 Aligned_cols=60 Identities=10% Similarity=0.222 Sum_probs=38.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.++++. |..+.+|+- .|+ .+-+++.+. ++.+++|+.|.++...-||
T Consensus 91 ~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~------~L~d~~tL~-----~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSBTG-----GGTCCTTCEEEEEECCCC-
T ss_pred EEeCCCCcHHHHHHHHHHHhCcChhhEEEEE-CCE------ECCCCCCHH-----HcCCCCCCEEEEEEecCCC
Confidence 46677899999999999875 322333332 121 122222222 4568999999999999887
No 61
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=89.28 E-value=0.23 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.6
Q ss_pred ceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
+-.++|||+.|. ..|.|+.||.|.|
T Consensus 139 ~a~t~VNG~~I~----~~~~L~~GDrI~l 163 (184)
T 4egx_A 139 GADTYVNGKKVT----EPSILRSGNRIIM 163 (184)
T ss_dssp TCCEEETTEECC----SCEECCTTCEEEE
T ss_pred CCeEEEcCEEcc----ccEEcCCCCEEEE
Confidence 345899999995 3689999999976
No 62
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=88.98 E-value=0.51 Score=27.23 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=35.3
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCccc--CceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVR--PGVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr--~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
|.+|...|+++|++.+.+.|.-.... . ++..+| -.-.++ .+.+.- .|.++.+||.+.|
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~~-~-~~~~irv~NK~~~L-~~~~~L----~d~~ItnGD~Lei 80 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMPP-R-EGHWIRVVNKDKVF-SGECKL----SDCGITNGDRLEI 80 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSCC-C-TTCEEEEGGGTEEE-ETTSBT----GGGTCCTTCEEEE
T ss_pred EECCCchhHHHHHHHHHHHhCCCcCC-C-CCCEEEEecCCEEE-cCCCEE----eeCCcCCCCEEEE
Confidence 56788999999999999988422111 1 112222 222233 333322 1789999999876
No 63
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.86 E-value=0.52 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=37.0
Q ss_pred cccCccCcHHHHHHHHHHhcC----cccccccccCCcccCceEEEEcCccccccCCccC--ccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI----KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT--TLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~----~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t--~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|=+.+.+..| ..+.+|+.. |+ ++-+++.+. ++ .+++|+.|.++-..-||
T Consensus 24 v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~-Gk------~L~D~~tL~-----~~~~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 24 LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS-GK------LLLDHQCLR-----DLLPKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET-TE------ECCSSSCHH-----HHSCSSSCSEEEEEECCCCCC
T ss_pred EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC-CE------ECcCcCCHH-----HHhcCCCCCCEEEEEeCCCCC
Confidence 345688999999999999752 223333322 22 222333222 33 67899999988776665
No 64
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=88.60 E-value=0.68 Score=26.12 Aligned_cols=60 Identities=7% Similarity=0.093 Sum_probs=33.9
Q ss_pred cccCccCcHHHHHHHHHHhcCcc--cccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKE--RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~--~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.+.+|+.+|.+.+.+..+.- ...++..... +..+ ..-.+..+. +..|+.||.+.+.|
T Consensus 18 i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-~~~l-~~~~~~~l~-----~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 18 ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK-TGEI-TASSSKSLH-----LLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-GGGS-SSCCCCTTT-----TTCCCTTCCEEC--
T ss_pred EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC-CCcc-cCCCCCCHH-----HcCCCCCCEEEEec
Confidence 56788899999999999988532 2234332211 0111 001233332 33589999998877
No 65
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.53 E-value=1.3 Score=25.16 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=33.9
Q ss_pred cccCccCcHHHHHHHHHHh-----cCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~-----~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++++..||.+|=+.+.+. .|..+.+|+-. |+ ++-+++.+. ++.+++|+.|.++
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~ygI~~g~~i~l~ 73 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA-GK------ILNDDTALK-----EYKIDEKNFVVVM 73 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET-TE------ECCTTSBGG-----GGTCCSSSEEEEE
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC-CE------ECCCcCcHH-----HCCCCCCCEEEEE
Confidence 5778889999999999987 34333333322 22 222332222 5678899998765
No 66
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.40 E-value=1.1 Score=27.24 Aligned_cols=60 Identities=3% Similarity=0.067 Sum_probs=35.5
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++....||.+|-+.+.+.. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-...||
T Consensus 46 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~tL~-----dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 46 FAVPENSSVQQFKEAISKRFKSQTDQLVLIFA-GK------ILKDQDTLI-----QHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEECTTCCHHHHHHHHHHHHCSCSSSEEEEET-TE------EESTTSCGG-----GTTCSSSEEEEEEEC----
T ss_pred EEECCCCcHHHHHHHHHHHHCcCcceEEEEEC-CE------EcCCCCCHH-----HcCCCCCCEEEEEeccCCC
Confidence 56778899999999998876 2223333321 21 222333222 5678899999998776665
No 67
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=88.31 E-value=0.67 Score=26.93 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=36.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+.+.. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-...||
T Consensus 36 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~tL~-----~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 36 FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-GK------ILKDPDSLA-----QCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCGGGEEEEET-TE------ECCTTSBHH-----HHTCCTTCEEEEEECCCCS
T ss_pred EEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCcCcHH-----HCCCCCCCEEEEEEcCCCC
Confidence 56778899999999998876 2223333321 21 122222221 4568899999998776664
No 68
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=88.29 E-value=1.2 Score=28.24 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=38.5
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|=+.+.++. |..+.+|+-. |+ .+-+++.+. ++.+++|+.|.++-..-||
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~tL~-----~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEEEEET-TE------ECCTTSBGG-----GGTCCTTCEEEEEECCCC-
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC-Cc------cccCcCcHH-----HcCCCCCCEEEEEEEeccc
Confidence 57788899999999998876 3223333322 22 122333322 4578999999999888776
No 69
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=88.18 E-value=0.24 Score=29.35 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=20.9
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
++|||+.+. .+..++|++||+|.|=.+
T Consensus 70 t~vng~~l~--~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 70 TVINKLKVV--KKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCC--CSSCCCCCTTCEEEEECC
T ss_pred cEECCEEcC--CCCcEECCCCCEEEEecc
Confidence 467888764 355789999999998764
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=88.14 E-value=0.98 Score=26.68 Aligned_cols=60 Identities=5% Similarity=0.035 Sum_probs=39.7
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|=+.+.+.. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-..-||
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~-Gk------~L~D~~tL~-----~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE-GI------FIKDSNSLA-----YYNMASGAVIHLALKERSG 111 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEET-TE------EECTTSBHH-----HHTCCSSCEEEEEECCCSC
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEEC-CE------ECCCCCCHH-----HCCCCCCCEEEEEEEcCCC
Confidence 56778899999999998876 2223333322 22 233333332 4568999999999888887
No 71
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=88.11 E-value=0.42 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.5
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEecCC
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFISTLH 71 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppva 71 (73)
.+|||+.+. .+..++|++||+|.|=.+..
T Consensus 77 T~vNg~~l~--~~~~~~L~~GD~I~lG~~~~ 105 (138)
T 2pie_A 77 VWLNRARLE--PLRVYSIHQGDYIQLGVPLE 105 (138)
T ss_dssp EEETTEECC--TTCCEECCTTCEEEESCCCT
T ss_pred eEECCEEcC--CCCcEECCCCCEEEECCCCC
Confidence 678998775 45568999999999976543
No 72
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=88.07 E-value=1.4 Score=23.96 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=34.3
Q ss_pred cccCccCcHHHHHHHHHHh-----cCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~-----~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.+..||.+|=+.+.++ .|..+.+|+-. |+ ++-+++.+. ++.+++|+.|.++-
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA-GK------ILSDDVPIR-----DYRIDEKNFVVVMV 79 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET-TE------ECCTTSBGG-----GGCCCTTSEEEEEE
T ss_pred EEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC-CE------ECcCCCCHH-----HcCCCCCCEEEEEE
Confidence 5677889999999999986 33333334322 22 222333332 45688999988763
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=88.03 E-value=1.7 Score=25.99 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=36.8
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+++.. |..+.+|+-. |+ ++-+++.+. ++.+++|+.|.++....||
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~-g~------~L~d~~tL~-----~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSBTG-----GGTCCTTCEEEEEECCTTC
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHHeEEEEC-Ce------ECcCcccHH-----HhccCCCCeeEEEeecccc
Confidence 57788899999999999876 3333333322 21 122222222 4568889998887766553
No 74
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=88.01 E-value=0.87 Score=27.30 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=40.8
Q ss_pred cccCccCcHHHHHHHHHHhcCccccc----ccc------cCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPE----MFM------KGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~----l~~------~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
++ |++.|+.++|+.... +.. ... +.+ .+-+=|++-...+||+.... +--+++|++||.|.|-
T Consensus 25 v~-t~g~tL~dvLk~~~~-ve~-e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~-Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENL-VDG-ESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNT-SADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTC-EEE-ECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCS-CGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCc-ccc-ccccccceEEEEcCEecCCCCCCEEEEEECCEEhhh-chhheEecCCCEEEEE
Confidence 45 788999999976652 211 111 111 12234678888999998753 5567899999999875
No 75
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=87.92 E-value=0.25 Score=30.77 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=21.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.+|||+.+. .+..++|++||+|.|-.+
T Consensus 105 T~VNg~~i~--~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 105 TFVNTELVG--KGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp EEETTEECC--TTCEEECCTTEEEEESST
T ss_pred eEECCEECC--CCCeEECCCCCEEEECCC
Confidence 688999875 455789999999998653
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.74 E-value=0.7 Score=26.40 Aligned_cols=53 Identities=6% Similarity=0.041 Sum_probs=32.2
Q ss_pred ccCccCcHHHHHHHHHHhc---Cccccc-ccccCCcccCceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 3 SLTFQLIMKDLLSWVGTNL---IKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~---~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
++++..||.+|-+.+.+.. |..+.+ +|...|+ +|-+++.+ . ++.+++|+.|.|
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk------~L~D~~tL---~--~y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK------SLKDEDVL---Q--KLPVGTTATLYF 85 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC------CCCTTCBT---T--TSSCCSEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc------CcCCCCCH---H--HcCCCCCCEEEE
Confidence 7889999999999999843 333444 3444444 22223222 2 566777777653
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=87.52 E-value=1.2 Score=29.23 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=39.7
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|-+.+.+.. |..+.+|+-. |+ +|-+++.+. +..+++|+.|.++-.+-||
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~-Gk------~L~D~~tL~-----dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCCEEET-TE------ECCTTCBGG-----GGTCCTTCEEEECCCCCCC
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC-CE------ECCCCCCHH-----HCCCCCCCEEEEEEEcCCC
Confidence 56788899999999999876 3333334322 22 122332222 4578999999999888876
No 78
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=87.03 E-value=2.1 Score=31.23 Aligned_cols=65 Identities=11% Similarity=-0.082 Sum_probs=45.0
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccc--------c------CCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFM--------K------GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~--------~------~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+.+|+|+|+-++++...+..|.|+-..=. + +-+=|.|-..++||..... +=.++.+++||.|.|-
T Consensus 317 Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~~-G~~~y~~~~gd~I~f~ 395 (399)
T 2pmv_A 317 VSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNE-GVADYIPFNHEHITAN 395 (399)
T ss_dssp EESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSS-CTTTCCCCTTCEEEEE
T ss_pred EEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeeccc-chhheecCCCCEEEEE
Confidence 57899999999999999987766421111 0 1123456778888766542 4456799999999874
No 79
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.82 E-value=0.7 Score=26.85 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=36.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++....||.+|-+.|.++. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-...||
T Consensus 31 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 31 FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA-GK------ILKDPDSLA-----QCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEETTCCHHHHHHHHHHHHTCCTTTEEEEET-TE------ECCTTSCHH-----HHTCCTTEEEEEEECCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCcCcHH-----HcCCCCCCEEEEEEcCCCC
Confidence 56777899999999998876 2222223221 21 122222221 4568899999998766654
No 80
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=86.76 E-value=0.29 Score=28.30 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=17.5
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
++|||+.+. ..+|++||+|.|
T Consensus 67 t~vng~~i~-----~~~L~~gd~i~i 87 (100)
T 3po8_A 67 TTVNNAPVQ-----EWQLADGDVIRL 87 (100)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred EEECCEECc-----eEECCCCCEEEE
Confidence 677998875 579999999986
No 81
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=86.73 E-value=1.7 Score=26.60 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=37.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.++=+.+.++. |..+.+|+- .|+ ++-+++.+. ++-+++|+.|.++-..-||
T Consensus 96 ~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~------~L~d~~tL~-----~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 96 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQLPLG-----EYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSBGG-----GGTCCTTCEEEEEECCC--
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE-CCe------ecCCCCCHH-----HcCCCCCCEEEEEEecCCC
Confidence 56778899999999998765 333333322 221 222333222 5679999999999777776
No 82
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=86.73 E-value=0.28 Score=30.09 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=18.0
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
++|||+.+.. ++|++||+|.|=
T Consensus 84 T~vNg~~i~~-----~~L~~GD~I~iG 105 (131)
T 3hx1_A 84 LMINGKKVQE-----HIIQTGDEIVMG 105 (131)
T ss_dssp EEETTEEESE-----EECCTTCEEECS
T ss_pred eEECCEEeEe-----EECCCCCEEEEC
Confidence 5779998862 899999999863
No 83
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=86.39 E-value=0.3 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.8
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. .+..++|++||+|.|
T Consensus 78 T~vng~~l~--~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 78 TLLNSNALD--PETSVNLGDGDVIKL 101 (118)
T ss_dssp CEESSSBCC--TTCEEECCTTEEEEE
T ss_pred eEECCEECC--CCCeEEcCCCCEEEE
Confidence 567998875 445678999999987
No 84
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=86.37 E-value=0.33 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.+|||+.+. .+ .++|++||+|.|=
T Consensus 89 T~VNg~~i~--~~-~~~L~~GD~I~lG 112 (151)
T 2jqj_A 89 TFINGNRLV--KK-DYILKNGDRIVFG 112 (151)
T ss_dssp EEETTEECC--SS-CEEECSSEEEEET
T ss_pred eEECCEEcC--CC-ceECCCCCEEEEC
Confidence 678999875 34 6899999999874
No 85
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.94 E-value=0.5 Score=26.81 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=37.4
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++....||.+|-+.+.+.. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-...||
T Consensus 31 ~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk------~L~D~~tL~-----~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 31 FFLAENSNVRRFKKQISKYLHCNADRLVLIFT-GK------ILRDQDILS-----QRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEETTCCHHHHHHHHHHHTCSCTTTBCCEET-TE------ECCTTSCHH-----HHTCCTTEEEECCBCCSSC
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC-CE------ECCCcCCHH-----HCCCCCCCEEEEEEeCCCC
Confidence 56777899999999999876 2223333321 22 122222222 4568899999988777765
No 86
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=85.78 E-value=1.9 Score=24.11 Aligned_cols=55 Identities=5% Similarity=0.136 Sum_probs=34.5
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.+..||.+|-+.+++.. |..+.+|+- .|+ .+-+++.+. ++-+++|+.|.++-
T Consensus 32 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~tL~-----~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 32 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRTLS-----DYNIQKESTLHLVL 88 (91)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCBTG-----GGTCCTTCEEEEEC
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CCe------ECCCcCcHH-----HCCCCCCCEEEEEE
Confidence 56778899999999998876 333333332 222 122333222 55689999998864
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.65 E-value=2.2 Score=25.21 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=38.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
|.+....++..|.++.+++..--. ..+.++-+|+.+..-+= .+.-+++||+|.++...-||
T Consensus 39 ~kVk~~t~l~kL~~~y~ek~gi~~-----------~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 39 FKIKRHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCCT-----------TTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEcCCChHHHHHHHHHHHhCCCc-----------ceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 455667889999999998763211 12233445555532211 12357899999999877776
No 88
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.42 E-value=2.8 Score=23.87 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=38.4
Q ss_pred ccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.++...||.+|=..|.+.+ |..+.+|+..++. .+...+..++.+ +.|+ .+.+++||+|.+.-
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~-~~L~--~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDL-QPLQ--FYSVENGDCLLVRW 91 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSS-SBSG--GGTCCTTCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCc-ccHh--hcCCCCCCEEEEEe
Confidence 4667789999999999888 4555566654322 122333232222 2332 67899999998753
No 89
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=85.17 E-value=0.58 Score=26.60 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.6
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+-+. ..+.|+.||+|.|.
T Consensus 28 V~VNg~~~~----~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 28 VWLNGSCAK----ASKEVKAGDTISLH 50 (92)
T ss_dssp CEETTEECC----TTCBCCTTCEEEEC
T ss_pred EEECCEEcC----CCCCcCCCCEEEEE
Confidence 788998652 37889999999884
No 90
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=84.96 E-value=1.2 Score=25.24 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=34.8
Q ss_pred ccCccCcHHHHHHHHHHhc--Ccccccccc--cCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNL--IKERPEMFM--KGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~--~~~~~~l~~--~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
++++..||.+|-+.+.+.. |..+.+|+. -.|+ ++-+++.+. ++.+++|+.|.++-
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk------~L~D~~~L~-----~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKLG-----ALKLKPNTKIMMMG 81 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBHH-----HHTCCTTEEEEEEC
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc------CcCCCCCHH-----HcCCCCCCEEEEEe
Confidence 7888999999999999876 444445541 1222 122233332 44688999988874
No 91
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.95 E-value=2.8 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=34.1
Q ss_pred cccCccCcHHHHHHHHHHhcC--cccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~--~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+..||.+|=+.+.++.. ..+.+|+- .|+ +|-|++. |. ++-+++|+.|.++
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L~--~~~i~~g~~i~lv 71 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIKLIY-SGK------VLQDSKT---VS--ECGLKDGDQVVFM 71 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-TTE------ECCTTSB---TT--TTTCCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCE------ECCCcCC---HH--HcCCCCCCEEEEE
Confidence 577888999999999998772 22333332 222 2223322 22 5678999999887
No 92
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=84.93 E-value=1.8 Score=24.13 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=33.6
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++++..||.+|-+.+.+.. |..+.+|+. .|+ ++-+++. |. ++.+++|+.|.++-
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L~--~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIF-KGK------VLVETST---LK--QSDVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEE-TTE------ECCTTCB---TT--TTTCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEE-CCe------ECCCcCC---HH--HCCCCCCCEEEEEE
Confidence 56788899999999998765 333333432 222 1222222 22 45688999888764
No 93
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=84.71 E-value=0.49 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=17.5
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. .++|++||+|.|
T Consensus 75 t~vng~~i~-----~~~L~~gd~i~i 95 (115)
T 2xt9_B 75 TYVNREPVD-----SAVLANGDEVQI 95 (115)
T ss_dssp EEETTEECS-----EEEECTTCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 577998875 478999999987
No 94
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.64 E-value=1.6 Score=23.48 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=33.6
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+++++..||.+|-+.+.+.. |..+.+|+-. |+ .+-+++.+. ++.+++|+.|.++-.
T Consensus 22 ~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-gk------~L~d~~tL~-----~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK-GK------ALADGKRLS-----DYSIGPNSKLNLVVK 79 (81)
T ss_dssp EEECSSCBHHHHHHHHHHHTCCCTTTCEEEET-TE------ECCTTSBGG-----GGTCCSSBCCEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-Ce------ECCCCCcHH-----HcCCCCCCEEEEEEe
Confidence 56778899999999999876 3223333322 22 112222222 456889998877643
No 95
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=84.57 E-value=0.34 Score=28.29 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.5
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+.. .++|++||+|.|
T Consensus 71 t~vng~~i~~----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 71 VIVEGRKIEH----QSTLSANQVVAL 92 (106)
T ss_dssp CEETTEECSS----EEECCTTCCEEE
T ss_pred eEECCEECCC----CeECCCCCEEEE
Confidence 5779988763 468999999976
No 96
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=84.52 E-value=0.35 Score=30.51 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.2
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.+|||+.+. .+..++|++||+|.|+
T Consensus 85 T~VNg~ri~--~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 85 SYLNNNRMI--QGTKFLLQDGDEIKII 109 (158)
T ss_dssp CEETTEECC--SSEEEECCSSCCEESC
T ss_pred eEECCEEcC--CCceEEcCCCCEEEEe
Confidence 478999885 4556899999999983
No 97
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.38 E-value=1.4 Score=25.29 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
++++...||.+|-+.|.+.. |..+.+|+. .|+ ++-++ . |. ++.+++|+.|.++
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~-~Gk------~L~D~-t---L~--~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVMV-KGG------TLKDD-D---WG--NIKMKNGMTVLMM 76 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCEE-TTE------ECCSS-C---CC--SCCCCSSCEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCc------CCCCC-C---HH--HCCCCCCCEEEEE
Confidence 57788899999999998876 434444443 222 11122 2 22 4567888888765
No 98
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=84.12 E-value=3.4 Score=22.07 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=34.2
Q ss_pred cc-cCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 2 LS-LTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~-l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
++ +++..||.+|-+.+++.. |..+.+|+-. |+ .+-+++.+ . ++.+++|+.|.++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~-g~------~L~d~~tL---~--~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR-GK------QMEDGHTL---F--DYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTCBT---T--TTTCCTTCEEEEEEC
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCCCCH---H--HcCCCCCCEEEEEEe
Confidence 45 778899999999998876 3223333321 21 12222222 2 557889999988754
No 99
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.11 E-value=0.9 Score=25.69 Aligned_cols=54 Identities=7% Similarity=-0.063 Sum_probs=33.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcC-ccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVND-CDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg-~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++....||.+|-+.+.++.+...+-+|. |+ +|-++ +.+ . ++.+++|+.|.++-
T Consensus 22 ~~v~~~~TV~~LK~~i~~~~~~~qrLi~~--Gk------~L~D~~~tL---~--~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 22 AVARPEDTVGTLKSKYFPGQESQMKLIYQ--GR------LLQDPARTL---S--SLNITNNCVIHCHR 76 (95)
T ss_dssp EEECSSSBHHHHHHHHSSSTTTTCEEEET--TE------ECCCSSCBT---T--TTTCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHhhCcCcEEEEEC--CE------EccCCcCCH---H--HcCCCCCCEEEEEE
Confidence 56778899999999988776332232331 21 22222 222 2 56788999998874
No 100
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=83.96 E-value=2.9 Score=24.91 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=37.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~PpvaGG 73 (73)
+.+....+++.|.++.+++..-- ...+..+-+|+.+..-+=. +.-+++||.|.++...-||
T Consensus 45 fkIk~tt~l~kL~~ay~ek~gi~-----------~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 45 FKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEeCCCCHHHHHHHHHHHHhCCC-----------cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 34556678889999888876311 1244555577766532111 2257899999999887776
No 101
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=83.69 E-value=0.82 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=21.6
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.+|||+.+. .+..++|++||+|.|=.+
T Consensus 85 T~vNg~~i~--~~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 85 VWLNRARLE--PLRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp EEESSCBCC--BTCCEECCSSCCEEESCC
T ss_pred eEECCEECC--CCccEECCCCCEEEECCC
Confidence 678999876 345689999999998664
No 102
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=83.62 E-value=1.9 Score=31.64 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=39.6
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccc--------c-C---CcccCceEEEEc-CccccccCCccCccCCCCEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFM--------K-G---DSVRPGVLVLVN-DCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~--------~-~---g~lr~~v~ilvN-g~~i~~l~g~~t~l~dgD~V~i 66 (73)
+.+|.|+|+-++++...+. |.|+-..=. + + ..=|.|-..++| |+... .+=-++.+++||.|.|
T Consensus 334 Vtv~~gssll~vLk~A~e~-~~F~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~-~Gv~~y~~~~ge~I~f 409 (414)
T 2bb6_A 334 VSVPAGSSLEDILKNAQEH-GRFRFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQ-QGIADYRPKDGETIEL 409 (414)
T ss_dssp EEEETTCCHHHHHHHHHHS-SSCCEEEECCTTSCEEEEETTEECCTTEEEEEEETTTEECS-SCTTTCCCCTTCEEEE
T ss_pred EEecCCCCHHHHHHHHHhc-cCCceEeeecCCCceEEEECCCccCCCceEEEEECCCCccc-ccccceecCCCCEEEE
Confidence 5688999999999999998 665421100 0 0 012345555666 55432 2334568999999987
No 103
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.57 E-value=2.2 Score=24.72 Aligned_cols=54 Identities=7% Similarity=0.120 Sum_probs=33.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+..||.+|-+.+++.. |..+.+|+- .|+ ++-+++.+. ++-+++|+.|.++
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~tL~-----~~gI~~g~tI~lv 97 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQTVE-----SYHIQDGHSVHLV 97 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-TTE------ECCTTSBTT-----TTTCCTTEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCcCcHH-----HCCCCCCCEEEEE
Confidence 57788899999999998876 322333332 222 222332222 4578999998876
No 104
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=83.09 E-value=0.79 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.104 Sum_probs=21.2
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
.+|||+.+. .+..++|++||+|.|=.+.
T Consensus 81 T~vNg~~l~--~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 81 TWLNGQKVE--KNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEETTEECC--TTCCEECCTTCEEEECTTS
T ss_pred eEECCEEcC--CCCeEEcCCCCEEEECCCc
Confidence 477998775 3556899999999986543
No 105
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=82.92 E-value=4.9 Score=23.07 Aligned_cols=58 Identities=3% Similarity=0.097 Sum_probs=35.8
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 71 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppva 71 (73)
+++++..||.+|-+.+.+.. |..+.+|+.. |+ ++-+++.+. ++.+++|+.|.++-...
T Consensus 39 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 39 FAVPENSSVQQFKEEISKRFKSHTDQLVLIFA-GK------ILKDQDTLS-----QHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEECSCCCHHHHHHHHHHHHTCCGGGEEEEET-TE------EECTTCCTG-----GGTCCTTCEEEEEECCS
T ss_pred EEECCCCCHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCcCcHH-----HcCCCCCCEEEEEEcCC
Confidence 56778899999999998876 3223333322 21 222333222 45689999998876543
No 106
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=82.75 E-value=0.73 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.7
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.+|||+.+. .+..++|++||+|.|=.+
T Consensus 109 T~vNg~~i~--~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNGQKVE--KNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETTEEEC--TTEEEECCTTCEEEESCS
T ss_pred eEECCEEcC--CCCceEcCCCCEEEECCC
Confidence 578998775 345689999999988543
No 107
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=82.52 E-value=0.44 Score=30.91 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.+|||+.+. .+..++|++||+|.|+
T Consensus 109 T~VNg~ri~--~~~~~~L~~GD~I~l~ 133 (182)
T 1qu5_A 109 SYLNNNRMI--QGTKFLLQDGDEIKII 133 (182)
T ss_dssp CEETTEECC--SSEEEECCTTBCCEEE
T ss_pred eEECCEEcC--CCcceEcCCCCEEEEE
Confidence 478999885 4556899999999993
No 108
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=82.25 E-value=0.83 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. ..+|++||+|.|
T Consensus 119 T~VNg~~i~-----~~~L~~GD~I~i 139 (162)
T 2kfu_A 119 TYVNREPVD-----SAVLANGDEVQI 139 (162)
T ss_dssp EEETTBCCS-----EEECCSSCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 577998885 478999999987
No 109
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=82.05 E-value=0.58 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=17.6
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
++|||+.+. .++|++||+|.|
T Consensus 129 T~VNG~~i~-----~~~L~~GD~I~l 149 (157)
T 3oun_A 129 TTVNNAPVQ-----EWQLADGDVIRL 149 (157)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred eEECCEECc-----eEECCCCCEEEE
Confidence 577998885 579999999987
No 110
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.91 E-value=1.6 Score=26.22 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=39.6
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccC----ccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT----TLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t----~l~dgD~V~i~PpvaGG 73 (73)
+.+....+++.|.++.+++..-- ...+.++-+|+.+.. .+| -+++||+|.++...-||
T Consensus 41 fkVk~~t~l~kL~~ay~ek~gi~-----------~~~~rfiFdG~~L~~---~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 41 FRIKSRTALKKLIDTYCKKQGIS-----------RNSVRFLFDGTPIDE---TKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp EEECTTSSHHHHHHHHHHHHTCC-----------SSSCEEESSSCBCCS---SSHHHHHHCSSEEEEEEECCCCCC
T ss_pred EEECCCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCC---CCCHHHcCCCCCCEEEEEEcccCc
Confidence 45666789999999998875211 113444556766542 344 57899999999988887
No 111
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=81.67 E-value=0.59 Score=27.98 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEcCccccccCCccCccCCCCEEEEEec
Q 035093 42 LVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 42 lvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
++||+.+. .+..++|++||.+.++|-
T Consensus 67 ~vng~~l~--k~~~~~L~~GD~l~Ll~~ 92 (102)
T 3kt9_A 67 SIDSVVIG--KDQEVKLQPGQVLHMVNE 92 (102)
T ss_dssp EETTEECC--BTCEEEECTTCCEEEETT
T ss_pred eECCEEcC--CCCeEEeCCCCEEEEccC
Confidence 45775543 667789999999999874
No 112
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=81.15 E-value=0.31 Score=29.55 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+.+.. |..+.+|+-. |+ ++-++..+. ++-+++|++|.++...-||
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~tL~-----~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC-CE------ECCCCCchh-----hhccCCCCEEEEEEEcCCC
Confidence 56778899999988888765 3223333322 22 122222222 4568999999998877776
No 113
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=80.79 E-value=0.54 Score=29.31 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.2
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. ..+|++||+|.|
T Consensus 110 T~VNg~~i~-----~~~L~~GD~I~i 130 (143)
T 2kb3_A 110 TYVNREPRN-----AQVMQTGDEIQI 130 (143)
T ss_dssp CEETTEECS-----EEECCTTEEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 467998875 478999999986
No 114
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=80.77 E-value=4.9 Score=21.67 Aligned_cols=55 Identities=5% Similarity=0.007 Sum_probs=34.7
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~ 67 (73)
+.+....+++.|.++.+++..-- ...+..+-+|+.+..-+=. +.-+++||.|.++
T Consensus 16 ~~v~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 16 FKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEECTTSCTHHHHHHHHHHHTCC-----------TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEECCCChHHHHHHHHHHHhCCC-----------cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 45566788999999988865311 1244555577766432111 2257899999876
No 115
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=80.49 E-value=5.7 Score=25.94 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=36.8
Q ss_pred cccCccCcHHHHHHHHHHhc-CcccccccccCCcccCceEEEEcCccccccCCccCccCC--CCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEE--KDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~-~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~d--gD~V~i~P 68 (73)
++++++.||-|+|+.+.... |.+.-+ +.-....-..=.+.|||+....= .|++++ |++++|-|
T Consensus 28 v~~~~~~tlL~~l~~~~~~~~~~l~~~-~~c~~g~Cg~C~v~i~G~~~~aC---~~~~~~~~g~~~~ie~ 93 (241)
T 2bs2_B 28 IEEAPSMTIFIVLNMIRETYDPDLNFD-FVCRAGICGSCGMMINGRPSLAC---RTLTKDFEDGVITLLP 93 (241)
T ss_dssp EECCTTCBHHHHHHHHHHHTCTTCCCC-CSSSSSSSCTTEEEETTEEEEGG---GCBGGGCTTSEEEEEC
T ss_pred EeCCCCChHHHHHHHhchhcCCCCccC-CCCCCCCCCCCEeEECCCeecch---hCcHhHcCCCeEEEec
Confidence 56788999999999987653 433211 11111122223677799876332 356665 56676654
No 116
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=80.47 E-value=1.7 Score=26.69 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=18.6
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+.+. ..+.|+.||+|.|.
T Consensus 36 V~VNG~~vk----~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 36 VHYNGQRSK----PSKIVELNATLTLR 58 (133)
T ss_dssp EEETTEECC----TTCBCCTTCEEEEE
T ss_pred EEECCEEcC----CCCEeCCCCEEEEE
Confidence 788998753 37889999999885
No 117
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=80.09 E-value=5 Score=24.85 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=37.5
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|=+.+.+.. |..+.+|+-. |+ .+-+++.+. ++.+++|+.|.++-...||
T Consensus 35 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~-g~------~L~d~~tL~-----~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 35 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTCBTG-----GGTCCTTCEEEEEECCCCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-Cc------cccccCCHh-----HcCCcccceeeeeeccccc
Confidence 56788899999999998876 3333334322 21 122222222 5568889988888766654
No 118
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=79.80 E-value=0.53 Score=28.36 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.7
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
++|||+.+. ..+.|++||+|.|
T Consensus 77 t~vNg~~i~----~~~~L~~Gd~i~i 98 (128)
T 1r21_A 77 TQVNGSVID----EPVRLKHGDVITI 98 (128)
T ss_dssp CEETTEECS----SCEECCTTEEEEC
T ss_pred EEECCEECC----CcEEcCCCCEEEE
Confidence 577999885 2578999999976
No 119
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=79.51 E-value=3.3 Score=25.74 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=35.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++.+..||.+|=+.+.++. |....+|+-. |+ .+-+++... ++-+++|+.|.++-..-||
T Consensus 111 l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~D~~tL~-----~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 111 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCCEEET-TE------ECCTTSBSG-----GGTCCTTCEEEECC-----
T ss_pred EEecCCCCHHHHHHHHHHHhCCCceeEEEEEC-Cc------cCCCCCcHH-----HhCCCCCCEEEEEEecCCC
Confidence 45677889999999998876 3333333322 21 222333222 5679999999999888887
No 120
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=79.14 E-value=5.7 Score=21.92 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=34.5
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccC----ccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT----TLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t----~l~dgD~V~i~ 67 (73)
+.+....+++.|.++.+++..-- ...+..+-+|+.+.. .+| -+++||.|.++
T Consensus 23 ~~i~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~---~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 23 ISLSPDSPLKVLMSHYEEAMGLS-----------GHKLSFFFDGTKLSG---KELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCT-----------TCCCEEEETTEECCS---CCCHHHHTCCTTCEEEEE
T ss_pred EEECCCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCC---CCCHHHcCCCCCCEEEEe
Confidence 45566789999999988876311 113445557776643 344 57899999876
No 121
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=78.49 E-value=0.71 Score=29.27 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.9
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.+|||+.+. .+..++|++||+|.|=
T Consensus 119 T~VNg~ri~--~~~~~~L~~GD~I~~G 143 (158)
T 3els_A 119 TCLNNVVIP--GARYIELRSGDVLTLS 143 (158)
T ss_dssp CEETTEECC--TTCCEECCTTEEEESS
T ss_pred cEECCEEcC--CCceEEcCCCCEEEEC
Confidence 467888775 3345789999999874
No 122
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=78.35 E-value=0.84 Score=32.55 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=33.7
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
-++.|+|+.|+-..+-+....-. +... + -+|++. -|++++|+|||.|.|+.
T Consensus 344 ~l~~G~t~~d~a~~iH~d~~~~f--~~a~----~-----~~~~~~----~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 344 LMKKGSTPRDLAFKVHTDLGKGF--LYAI----N-----ARTKRR----VGEDYELQFNDIVKIVS 394 (397)
T ss_dssp EEETTCCHHHHHHHHCHHHHHTE--EEEE----E-----TTTCSB----CCTTCCCCTTEEEEEEE
T ss_pred EeCCCCCHHHHHHHHhHHHHhhh--hhhH----H-----hcCCEE----cCCCccccCCCEEEEEe
Confidence 36779999999988755442111 1111 0 236653 28899999999999975
No 123
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=78.14 E-value=0.44 Score=30.19 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
+++++..||.+|-+.+.+.. |..+.+|+-. |+ +|-++..+. +.-+++|+.|.++..+-||
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk------~L~D~~tL~-----dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC-CE------EccccCcHH-----HcCCCCCCEEEEEeeccCC
Confidence 56778889999988888765 3223333322 22 122332222 4568899999998887776
No 124
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=77.60 E-value=7 Score=23.70 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=34.5
Q ss_pred cccCccCcHHHHHHHHHHhc--Cccccccc-ccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMF-MKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~-~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+++.+..||.++=+.+.+.. |..+.+|+ -+.|+. +-+++.+. ++.+++|+.|.++-.
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~------L~d~~tL~-----~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA------LQDRVPLA-----SQGLGPGSTVLLVVD 76 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB------CCTTSCGG-----GGTCCTTCEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC------CCCCCCHH-----HcCCCCCCEEEEEcc
Confidence 57788899999999888876 44344444 322321 22222222 556788888877654
No 125
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.03 E-value=1.9 Score=25.70 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=36.5
Q ss_pred cccCccCcHHHHHHHHHHhcC--cccccccccCCc--c------cCceEEEEcCcccc----ccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI--KERPEMFMKGDS--V------RPGVLVLVNDCDWE----LSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~--~~~~~l~~~~g~--l------r~~v~ilvNg~~i~----~l~g~~t~l~dgD~V~i~ 67 (73)
+++++.+||.+|=+.+.++.. ..+. .|. + +.+.+| -||+... .| .++-+++|+.|.|+
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q-----~g~~~isw~~~w~q~~Li-~~Gk~L~dD~~tL--~dygI~~g~~l~lv 93 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQERE-----GGVQHISWSYVWRTYHLT-SAGEKLTEDRKKL--RDYGIRNRDEVSFI 93 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHT-----TCCCCCCHHHHHTTEEEE-SSSCEECCSSSBH--HHHTCCSSEEEEEE
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccc-----cCcceeeeeecceeEEEE-eCCcCccCCcCCH--HHcCCCCCCEEEEE
Confidence 678889999999888888762 1111 000 0 001122 2333211 11 25579999999999
Q ss_pred ecCCC
Q 035093 68 STLHG 72 (73)
Q Consensus 68 PpvaG 72 (73)
..+-|
T Consensus 94 ~~lr~ 98 (105)
T 1v2y_A 94 KKLGQ 98 (105)
T ss_dssp ECSCS
T ss_pred ehhcc
Confidence 87765
No 126
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=76.48 E-value=2.7 Score=26.56 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=21.0
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
|.|||+-+.. ..+.+++||+|.+-.+.
T Consensus 78 V~VNG~~v~~---ps~~V~~gD~I~V~~~~ 104 (159)
T 1c05_A 78 ILVDGSRVNI---PSYRVKPGQTIAVREKS 104 (159)
T ss_dssp EEETTEECCC---SSCBCCTTCEEEECGGG
T ss_pred EEECCEEeCc---CCcEeCCCCEEEEeCce
Confidence 7899998742 36789999999986543
No 127
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.48 E-value=2.3 Score=24.28 Aligned_cols=54 Identities=6% Similarity=0.064 Sum_probs=34.3
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++++..||.+|-+.|.+.. |..+.+|+. .|+. + ++..+. ++.+++|+.|.++-
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~------L-dd~tL~-----~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLV------P-EDKTLR-----EIKVTSGAKIMVVG 86 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBC------C-SSSBHH-----HHCCCTTEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCee------C-CcCcHH-----HCCCCCCCEEEEEe
Confidence 57888899999999988776 444445543 2221 1 332221 45678898888764
No 128
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=76.17 E-value=1.1 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEcCccccc------cCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWEL------SGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~------l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+.. ..+...+|++||+|.|
T Consensus 78 T~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 78 TLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred EEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 5779988863 1245789999999976
No 129
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=76.17 E-value=0.55 Score=28.81 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.9
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. .+..++|++||+|.|
T Consensus 102 T~vNg~~l~--~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 102 TFLGHIRLE--PHKPQQIPIDSTVSF 125 (140)
T ss_dssp EESSSCEEC--SSSCCEECTTCCBBC
T ss_pred eEECCEECC--CCccEECCCCCEEEE
Confidence 577998875 355789999999876
No 130
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=74.11 E-value=12 Score=24.78 Aligned_cols=63 Identities=5% Similarity=-0.069 Sum_probs=36.4
Q ss_pred cccCc-cCcHHHHHHHHHHh-cCcccccccccCCcccCceEEEEcCccccccCCccCccCC--CCEEEEEe
Q 035093 2 LSLTF-QLIMKDLLSWVGTN-LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEE--KDVVVFIS 68 (73)
Q Consensus 2 ~~l~~-~~TV~~ll~~L~~~-~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~d--gD~V~i~P 68 (73)
+++++ +.||-|+|+.+... .|.+.-+ ++-.-..-..=.|.|||+.+.. =.|++.+ |+.++|-|
T Consensus 35 v~~~~~~~tlLd~l~~~~~~~~p~l~~~-~~c~~g~Cg~C~v~i~G~~~~a---C~~~~~~~~g~~~~iep 101 (252)
T 2h88_B 35 VDLNKCGPMVLDALIKIKNELDSTLTFR-RSCREGICGSCAMNIAGGNTLA---CTKKIDPDLSKTTKIYP 101 (252)
T ss_dssp EEGGGSCSBHHHHHHHHHHHTCTTCCCC-CSCSSSSSCTTEEEETTEEEEG---GGSBCCCCTTSCEEEEC
T ss_pred EecCCCCChHHHHHHHhCcccCCCcccc-CCCCCCCCCCCEEEECCcEEcc---ccCCHhHcCCCceEEec
Confidence 46667 99999999998764 3444321 1111112222367899996542 2456665 45566554
No 131
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=73.82 E-value=1.3 Score=29.63 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=19.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.+|||+.|.. +..++|++||+|.|=++
T Consensus 166 TfVNG~rI~~--~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 166 TCLNNVVIPG--ARYIELRSGDVLTLSEF 192 (205)
T ss_dssp CEETTEECCB--TSCEECCTTCEEESSSS
T ss_pred CeECCEECCC--CceeECCCCCEEEECCC
Confidence 5679888752 23468999999987543
No 132
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=75.87 E-value=0.68 Score=24.82 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=34.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG 72 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaG 72 (73)
+++++..||.+|-+.+++.. |..+.+|+- .|+ .+-++..+. ++.+++|+.|.++...-|
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk------~L~d~~tL~-----~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGK------ELPNHLTVQ-----NCDLEQQSIVHIVQRPRR 75 (76)
Confidence 56777889999988888765 222223332 222 122332222 556889999988776544
No 133
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=73.59 E-value=3.5 Score=22.96 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=32.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++++..||.+|=+.+.+.. |..+.+|+-. |+. ++-|++.+. ++.+++|+.|.++
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk~-----lL~D~~tL~-----~y~I~~gs~i~lv 81 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD-GIV-----ILREDLTVE-----QCQIVPTSDIQLE 81 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET-TEE-----CCCSSSBHH-----HHTCCTTSCEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEEC-CEE-----ecCCcCCHH-----HcCCCCCCEEEEE
Confidence 57788899999999998876 3333334322 220 022332222 4568899988765
No 134
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=73.05 E-value=4.1 Score=29.05 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.7
Q ss_pred cCCccCccCCCCEEEEEe
Q 035093 51 SGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 51 l~g~~t~l~dgD~V~i~P 68 (73)
..|.++.|+|||.|.|+.
T Consensus 358 ~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 358 YVGLSHILEDEDVVTILK 375 (376)
T ss_dssp EECTTCBCCTTCEEEEEE
T ss_pred ccCCCcEEcCCCEEEEEe
Confidence 359999999999999874
No 135
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=71.23 E-value=6.3 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=18.7
Q ss_pred EEcCccccccCCccCccCCCCEEEEEec
Q 035093 42 LVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 42 lvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.-+++-+ ...-+|.|+.||.+.++-+
T Consensus 47 ~R~~~~~--~p~~~~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 47 VRGGVLV--VPRGDTEILSGDKLYVIVS 72 (86)
T ss_dssp EETTEEE--CCCTTCBCCTTCEEEEEEE
T ss_pred EECCEEE--CCCCCCEECCCCEEEEEEC
Confidence 3455544 3566999999999998743
No 136
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=71.22 E-value=9.3 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=40.0
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~PpvaGG 73 (73)
|.+....+++.|.++.+++..--. ..+..+-+|+.|..-+=. +--++|||+|.++..--||
T Consensus 71 FKIKrtTpL~KLmeAYcERqGL~~-----------~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 71 FKIKKTTPLRRLMEAFAKRQGKEM-----------DSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEETTSCTHHHHHHHHHHTTCCG-----------GGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEccCChHHHHHHHHHHHhCCCc-----------ccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 345566788999999988763211 234455577777532211 2257999999999877776
No 137
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=71.14 E-value=14 Score=24.37 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.6
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
+.+....+++.|.++.|++..-- ...+..+-+|++|..-+- .+--+++||+|.++...-||
T Consensus 43 fkIk~~t~l~kL~~ay~er~Gi~-----------~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 43 FKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp EEECTTSCTHHHHHHHHHHHSSC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EEEecCCHHHHHHHHHHHHhCCC-----------hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 34566788999999998876321 234666778888754322 12257999999999877665
No 138
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=71.07 E-value=3.4 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=20.0
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEe
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
|.|||+-+.. ..+.+++||+|.+-.
T Consensus 126 V~VNG~~v~~---ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDL---PSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCC---TTCBCCTTCEEEECG
T ss_pred EEECCEEeCc---CCcCcCCCCEEEEcC
Confidence 7899998742 368899999999854
No 139
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=70.62 E-value=2 Score=26.00 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.0
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.++||+.+. .+....|++||.+.++|-
T Consensus 72 ~~vng~~l~--k~~~~~L~~GD~leLl~g 98 (110)
T 2brf_A 72 STTGTQELK--PGLEGSLGVGDTLYLVNG 98 (110)
T ss_dssp CEEC-CBCC--TTCEEEEETTCEEEEETT
T ss_pred cEECCEEcC--CCCEEEecCCCEEEEccC
Confidence 456775543 677889999999999874
No 140
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=69.66 E-value=14 Score=21.37 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=32.0
Q ss_pred ccCccCcHHHHHHHHHHhc---CcccccccccCCcccCceEEEEcCccccccCCccCcc-CCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNL---IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTL-EEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~---~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l-~dgD~V~i~P 68 (73)
++++..||.++=+.+.+.. |..+.+|+-. | -+|-+++.+. ++.+ ++|+.|.++-
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~-G------k~L~D~~tL~-----dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEIKLLLK-G------KVLHDNLFLS-----DLKVTPANSTITVMI 94 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGEEEEET-T------EEECTTCBGG-----GSCCBTTBCEEEEEE
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhEEEEEC-C------EECcCcCCHH-----HcCcCCCCCEEEEEE
Confidence 5568899999999983333 3333333322 1 1233443333 5678 8999988763
No 141
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=69.35 E-value=2.5 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=17.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
|.|||+-+.. ..+++++||.|.+
T Consensus 48 V~VNG~~v~~---~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETR---KRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCC---SSCCCCSSEEEEE
T ss_pred EEECCEEecC---CCCCCCCCCEEEE
Confidence 6789987642 3677999998876
No 142
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=69.05 E-value=12 Score=22.22 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=35.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCcc-CCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTL-EEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l-~dgD~V~i~ 67 (73)
+++.+..||.+|=+.+.+++ |....+++. .|+ ++-+++.+. ++-+ ++|+.+.++
T Consensus 41 l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~-ggk------ll~D~~TL~-----~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 41 LTVRPDMTVASLKDMVFLDYGFPPVLQQWVI-GQR------LARDQETLH-----SHGVRQNGDSAYLY 97 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------EECTTCBTG-----GGTCCSTTCEEEEE
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHEEEec-cCe------EccCcCcHH-----HcCCCCCCCEEEEE
Confidence 56778899999999999887 333334443 222 233444432 5778 599988775
No 143
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.62 E-value=7 Score=22.49 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=32.6
Q ss_pred cccCccCcHHHHHHHHHHhcC--cccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~--~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++....||.+|-+.+.++.. ..+.+|+.. |+ .+-+++.+. ++.+++|+.|.++-
T Consensus 38 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~tL~-----~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 38 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS-GR------PLTDKMKFE-----ELKIPKDYVVQVIV 94 (106)
T ss_dssp EEECTTSHHHHHHHHHHHTTCCCSTTCEEEET-TE------ECCTTSHHH-----HCCCSSSCEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC-CE------ECCCCCcHH-----HcCCCCCCEEEEEE
Confidence 567788999999999988762 222233321 21 111222221 45688999888764
No 144
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.60 E-value=13 Score=20.88 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=35.1
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccC--CcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKG--DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~--g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
++++...||.+|=+.|.+.. |..+.+|+..+ |+. +.-+.++. +.|. ++.+++|++|.+.
T Consensus 23 ~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~---~~~l~~D~--~tL~--~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 23 KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKF---YSKLDQED--ALLG--SYPVDDGCRIHVI 85 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCE---EEECCCSS--SBTT--SSSCCTTCEEEEB
T ss_pred EEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCcc---ccccCCCc--CCHh--HCCCCCCCEEEEE
Confidence 46788899999999999887 44444454322 221 00011221 1232 6678899998775
No 145
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=68.47 E-value=2.3 Score=28.47 Aligned_cols=22 Identities=23% Similarity=-0.032 Sum_probs=17.6
Q ss_pred EEEcCccccccCCccCccC-CCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLE-EKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~-dgD~V~i 66 (73)
+++||+.+.- .+.|+ .||+|.|
T Consensus 137 vyvNg~~i~~----~~~L~~~GD~I~i 159 (238)
T 1wv3_A 137 VYINYELQEQ----LTNKAYIGDHIYV 159 (238)
T ss_dssp EEETTEECCS----SEEEEETTCEEEE
T ss_pred EEECCEEecc----ceeccCCcCEEEE
Confidence 6889988752 45899 9999987
No 146
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=68.24 E-value=6.6 Score=21.53 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=16.8
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++.+..||.+|-+.+.++.
T Consensus 20 ~~v~~~~tV~~lK~~i~~~~ 39 (90)
T 4dwf_A 20 FIVGAQMNVKEFKEHIAASV 39 (90)
T ss_dssp EEEETTCBHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 56777899999999998876
No 147
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.19 E-value=3.7 Score=24.30 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=32.8
Q ss_pred cccCccCcHHHHHHHHHHhc--Cccccc-ccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+..||.+|=+.++++. |..+.+ +|. |+ +|-+++.. .++.|++|+.|.++
T Consensus 34 lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~--GK------iL~D~~TL-----~~y~I~~gsti~vl 89 (100)
T 1wju_A 34 LETRLHITGRELRSKIAETFGLQENYIKIVIN--KK------QLQLGKTL-----EEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEESSSBHHHHHHHHHHHTTCCSTTCEEEET--TE------ECCTTSBH-----HHHTCCSSEEEEEE
T ss_pred EEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC--Ce------ECCCCCcH-----HHcCCCCCCEEEEE
Confidence 56778899999999999887 332222 232 22 22233222 25678899988655
No 148
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=67.54 E-value=5 Score=23.34 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=16.8
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++++..||.+|=+.|.++.
T Consensus 40 l~v~~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 40 ISCFLNWTVGKLKTHLSNVY 59 (99)
T ss_dssp EEECTTSBHHHHHHHHHHHS
T ss_pred EEcCCCCHHHHHHHHHHHHh
Confidence 45688899999999999865
No 149
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=67.08 E-value=2.1 Score=30.00 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEcCccccccCCccCccCCCCEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+|||+.+. ..++|++||+|.|
T Consensus 350 t~vng~~i~----~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 350 VHVQHERIR----SAVTLNDGDHIRI 371 (388)
T ss_dssp CEETTEECS----SEEEECTTCEEEE
T ss_pred eEECCEECC----CceECCCCCEEEE
Confidence 577888873 3678999999987
No 150
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=66.98 E-value=11 Score=22.00 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccC----ccCCCCEEEEE
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT----TLEEKDVVVFI 67 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t----~l~dgD~V~i~ 67 (73)
.+...++++.|+++.+++..- . ...+..+-+|+.|. +.+| -++|||.|.++
T Consensus 42 kIk~~t~l~kLm~aY~~~~g~-~----------~~~vrF~FDG~rI~---~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 42 SLSRDSPLKTLMSHYEEAMGL-S----------GRKLSFFFDGTKLS---GRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEETTSCHHHHHHHHHHHTTC-S----------SSCCEEEETTEECC---SCSCHHHHTCCTTEEEEEE
T ss_pred EECCCChHHHHHHHHHHHHCC-C----------cccEEEEECCEEcC---CCCCHHHcCCCCCCEEEEe
Confidence 344567888888888876531 1 12466777888774 4456 47999999876
No 151
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=65.56 E-value=12 Score=22.88 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=18.5
Q ss_pred cccCccCcHHHHHHHHHHhcCcc
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKE 24 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~ 24 (73)
+++.+..||.++=+.+.+.+|..
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~d 54 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPRE 54 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTT
T ss_pred eecCccCHHHHHHHHHHhhcccc
Confidence 46678899999999998877643
No 152
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=65.29 E-value=16 Score=26.07 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=32.0
Q ss_pred cccCccCcHHHHHHHHHHh-----cCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEE
Q 035093 2 LSLTFQLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVV 64 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~-----~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V 64 (73)
|++....||.+|-+.+.+. +|..+.+|+.. |+ +|-+++.+. ++.+++|+.|
T Consensus 22 leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~-GK------~L~D~~tL~-----dygI~~gstI 77 (368)
T 1oqy_A 22 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA-GK------ILSDDVPIR-----DYRIDEKNFV 77 (368)
T ss_dssp ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS-SS------EECSSSBTT-----TTCCCTTSCE
T ss_pred EEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC-Ce------ecCCcCCHH-----HcCCCCCCEE
Confidence 5778889999999999984 33334344322 22 333443332 5668888877
No 153
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.28 E-value=7.8 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=28.6
Q ss_pred cCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEc-CccccccCCccCccCCCCEEEEEe
Q 035093 7 QLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVN-DCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 7 ~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvN-g~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
..||.+|-+.|.+.. |..+.+|+.. |+ .+-+ +..+. ++.+++|+.|.++-
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~~~-Gk------~L~D~~~~L~-----~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLIFK-GK------SLKEMETPLS-----ALGIQDGCRVMLIG 83 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEEET-TE------EECCSSSBHH-----HHTCCSSEEEEEES
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEEEC-Ce------ecCCCcccHH-----HCCCCCCCEEEEEe
Confidence 389999999998876 3333344322 21 1212 11121 34578899888764
No 154
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=64.12 E-value=17 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=20.1
Q ss_pred cccC-ccCcHHHHHHHHHHhcC--cccccc
Q 035093 2 LSLT-FQLIMKDLLSWVGTNLI--KERPEM 28 (73)
Q Consensus 2 ~~l~-~~~TV~~ll~~L~~~~~--~~~~~l 28 (73)
+++. +..||.+|.+.|.++.+ ....+|
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL 50 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTL 50 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCC
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEE
Confidence 5667 78999999999998773 334444
No 155
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.15 E-value=5.4 Score=23.57 Aligned_cols=54 Identities=6% Similarity=0.009 Sum_probs=32.5
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+..||.++-+.+.++. |..+.+|... |+ +|-|++.+. ++.+++|+.|.+.
T Consensus 43 lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~-Gk------~L~D~~TL~-----dygI~~gstlhL~ 98 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW-YT------IFKDHVSLG-----DYEIHDGMNLELY 98 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCSSCBHH-----HHTCCTTEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC-CE------ECCCCCCHH-----HcCCCCCCEEEEE
Confidence 56778899999999998876 3333333321 22 232333222 4567888887654
No 156
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=63.06 E-value=7.3 Score=26.86 Aligned_cols=63 Identities=5% Similarity=-0.064 Sum_probs=36.3
Q ss_pred cccCc-cCcHHHHHHHHHHhc-CcccccccccCCcccCceEEEEcCccccccCCccCccC--CCCEEEEEe
Q 035093 2 LSLTF-QLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLE--EKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~-~~TV~~ll~~L~~~~-~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~--dgD~V~i~P 68 (73)
+++++ +.||-++|..+...+ |.+.-+ +.-.-..-..=.|.|||+.+.. =.|++. .|+.++|-|
T Consensus 59 v~v~~~~~tlLdaL~~i~~~~~ptl~~~-~~C~~G~CGsC~V~InG~~~la---C~t~v~~~~~~~~tIep 125 (282)
T 3vr8_B 59 VDLDKCGTMVLDALIKIKNEVDPTLTFR-RSCREGICGSCAMNIAGENTLA---CICNIDQNTSKTTKIYP 125 (282)
T ss_pred EEeCCCCCcHHHHHHhcCcccCCceeec-CCCCCCCCCCCEEEECCEEecc---hhhhHhHhcCCcEEecc
Confidence 45666 899999999887643 433211 1111123344468899998643 234554 255666644
No 157
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=62.64 E-value=13 Score=20.85 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.4
Q ss_pred ccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 35 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 35 lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.=.|.++|..|+.... .+|+.|+.|.++-
T Consensus 27 i~~~G~V~i~Ge~W~A~s~--~~i~~G~~V~Vv~ 58 (80)
T 2exd_A 27 AEDHYLVEVEGDKWIAYSD--EKLSLGDRVMVVD 58 (80)
T ss_dssp CTTCEEEEETTEEEEECCS--SCCCTTCEEEEEE
T ss_pred cCCCEEEEECCEEEEEEEC--CccCCCCEEEEEE
Confidence 4444569999999998764 6899999998864
No 158
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=60.97 E-value=25 Score=21.21 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=37.4
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~Pp 69 (73)
|.+....+++.|.++.+++..- -...+..+-+|+.|..-+= .+--+++||+|.++..
T Consensus 55 fkIk~tt~L~KLm~aY~er~Gl-----------~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 55 FKVKMTTHLKKLKESYCQRQGV-----------PMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEETTSCTHHHHHHHHHHHTC-----------CTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEccCChHHHHHHHHHHHhCC-----------ChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 3455667888999999887631 1235667778887753211 1225799999998864
No 159
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=60.57 E-value=8.5 Score=20.98 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=16.6
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++.+..||.+|=+.+.++.
T Consensus 32 ~~v~~~~tV~~lK~~i~~~~ 51 (88)
T 4eew_A 32 FIVGAQMNVKEFKEHIAASV 51 (88)
T ss_dssp EEEETTCBHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 46677899999999998876
No 160
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=59.61 E-value=26 Score=22.65 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=32.9
Q ss_pred cccCccCcHHHHHHHHHHh-cCcccccccccCCcccCceEEEEcCccccccCCccCccCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTN-LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEK 61 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~-~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dg 61 (73)
++++++.||-++++.+... -|.+.-+-.-..|. -..=.|.|||+.+.. =.|+++++
T Consensus 28 ~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~-Cg~C~v~v~G~~~~a---C~~~~~~~ 84 (243)
T 1kf6_B 28 VPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAI-CGSCGMMVNNVPKLA---CKTFLRDY 84 (243)
T ss_dssp EEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSS-SCCCEEEETTEEEEG---GGCBGGGC
T ss_pred EecCCCChHHHHHHHcCcccCCCcccccCCCCCc-CCCCEeEECCEEEee---eeeEHhhC
Confidence 5678999999999998654 35442111001222 223456789986543 24667666
No 161
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=59.38 E-value=5.4 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=18.7
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+.+. ..+++++.||+|.+.
T Consensus 30 V~VNG~~v~---~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 30 VTVDGEIVR---NAAFKLLPEHDVAYD 53 (234)
T ss_dssp EEETTEECC---CTTCEECTTCCEEET
T ss_pred EEECCEEeC---CCCCCCCCCCEEEEe
Confidence 678998764 237889999999874
No 162
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=58.22 E-value=6.1 Score=27.62 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.9
Q ss_pred CccCCCCEEEEEecCCC
Q 035093 56 TTLEEKDVVVFISTLHG 72 (73)
Q Consensus 56 t~l~dgD~V~i~PpvaG 72 (73)
-+|+.||+|.|+.|-+|
T Consensus 8 ~~L~~GD~I~ivaPSs~ 24 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSP 24 (336)
T ss_dssp CCCCTTCEEEEECSSSC
T ss_pred CCCCCCCEEEEEeCCCC
Confidence 57999999999999765
No 163
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=57.98 E-value=6.8 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.8
Q ss_pred EEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.|.|||+-+.. ..+.+++||+|.+-.
T Consensus 115 ~V~VNG~~V~~---pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 115 HILVNGRIVDI---PSYRCKPQDTIMARD 140 (201)
T ss_dssp CEEETTEECCC---TTCBCCTTEEEEECS
T ss_pred cEEeCCEEEee---cceecCCCCEEEEcc
Confidence 37889987642 367899999998853
No 164
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=57.75 E-value=6.5 Score=23.19 Aligned_cols=19 Identities=5% Similarity=0.336 Sum_probs=16.9
Q ss_pred cccCccCcHHHHHHHHHHh
Q 035093 2 LSLTFQLIMKDLLSWVGTN 20 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~ 20 (73)
+++.+..|++++|+.|+++
T Consensus 9 l~v~~~~TL~~lid~L~~~ 27 (98)
T 1y8x_B 9 IQFSPSAKLQEVLDYLTNS 27 (98)
T ss_dssp EECCTTCBHHHHHHHHHHC
T ss_pred EEECCchhHHHHHHHHHhC
Confidence 5778889999999999984
No 165
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=56.88 E-value=30 Score=20.89 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=19.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcc
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKE 24 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~ 24 (73)
+++.+..||.+|=+.+.+.+|..
T Consensus 32 lev~~s~TV~~lK~~I~~~~p~d 54 (125)
T 2gow_A 32 FLFSPNDSASDIAKHVYDNWPMD 54 (125)
T ss_dssp EEECTTSBHHHHHHHHHSSCCCS
T ss_pred EEeCCccHHHHHHHHHHHHCCcc
Confidence 57788899999999999876643
No 166
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=56.16 E-value=3.3 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=9.9
Q ss_pred CccCCCCEEEEEecCCCC
Q 035093 56 TTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 56 t~l~dgD~V~i~PpvaGG 73 (73)
.||.++.+|.|--|++||
T Consensus 15 SPLa~~~ei~l~vPvG~G 32 (76)
T 2kdd_A 15 SPLADSKEIFLTVPVGGG 32 (76)
T ss_dssp -----CCSCEECCCSSSS
T ss_pred CcCCCCCceEEEeecCCC
Confidence 566777777777777776
No 167
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=56.05 E-value=15 Score=21.41 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=32.4
Q ss_pred cccCccCcHHHHHHHHHHhc--Cccc-ccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKER-PEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~-~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+..||.+|=+.++++. |..+ +-+| .|+ +|-+.+. | .++.+++|+.+.++
T Consensus 36 v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif--~Gk------~LkD~~T---L--~dY~I~dgstLhL~ 91 (93)
T 3plu_A 36 VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK--GGS------VLKDHIS---L--EDYEVHDQTNLELY 91 (93)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCGGGEEEEE--TTE------ECCTTSB---T--GGGTCCTTCEEEEE
T ss_pred EEECCcCHHHHHHHHHHHHhCCCHHHEEEEe--CCE------EccCcCC---H--HHcCCCCCCEEEEE
Confidence 45567789999999888776 2222 2233 222 2323322 2 37889999998764
No 168
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=55.17 E-value=12 Score=21.89 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.3
Q ss_pred eEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 39 VLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 39 v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
=.|.++|..|+... +.+++.|+.|.|.-
T Consensus 57 G~V~i~Ge~W~A~s--~~~i~~G~~V~Vv~ 84 (101)
T 2k5h_A 57 GLVKVDGETWRATS--GTVLDVGEEVSVKA 84 (101)
T ss_dssp EEEEETTEEEEEEC--SSCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEe--CCcCCCCCEEEEEE
Confidence 45888999999876 56799999998863
No 169
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=55.06 E-value=6.9 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=18.4
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+.+. ..+++|++||+|.+.
T Consensus 29 V~VNG~~v~---~~~~~v~~gD~I~v~ 52 (243)
T 1vio_A 29 VKINGEIVK---SGSVQISQEDEIYFE 52 (243)
T ss_dssp EEETTEECC---CTTCEECTTSCEEET
T ss_pred EEECCEEeC---CCCCCcCCCCEEEEe
Confidence 678999773 236889999988774
No 170
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.54 E-value=16 Score=21.02 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=28.7
Q ss_pred cCcHHHHHHHHHHhcC-c---cc-ccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 7 QLIMKDLLSWVGTNLI-K---ER-PEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 7 ~~TV~~ll~~L~~~~~-~---~~-~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
..||.+|=+.+.+..| + .+ .+|+-. |+ +|-+++.+. ++.+++|+.|.++-
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~-Gk------~L~D~~tL~-----~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYC-GR------KLKDDQTLD-----FYGIQPGSTVHVLR 98 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEET-TE------ECCTTCBHH-----HHTCCTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEEC-Ce------ECCCCCcHH-----HcCCCCCCEEEEEe
Confidence 4899999999998763 1 12 222211 11 122222222 44688999988864
No 171
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=54.28 E-value=18 Score=20.68 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=29.3
Q ss_pred cccCccCcHHHHHHHHHHhcCc--ccccccccCCcccCceEEEEcCcccc
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIK--ERPEMFMKGDSVRPGVLVLVNDCDWE 49 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~--~~~~l~~~~g~lr~~v~ilvNg~~i~ 49 (73)
+.+|.|.+..+|.+.|+++.+- ..-.|...+-.-+..+ +.|+.|.+
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v--i~~d~dl~ 65 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV--PLSEDSMK 65 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE--ECCTTTHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee--ccChHHHH
Confidence 5789999999999999999853 2223333332222233 66776653
No 172
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=54.09 E-value=7.6 Score=27.66 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.3
Q ss_pred cCccCCCCEEEEEecCCC
Q 035093 55 DTTLEEKDVVVFISTLHG 72 (73)
Q Consensus 55 ~t~l~dgD~V~i~PpvaG 72 (73)
--+|+.||+|.|+.|-+|
T Consensus 37 P~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 37 AAPLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCCTTCEEEEECSSCC
T ss_pred CCCCCCcCEEEEEeCCCC
Confidence 346999999999999765
No 173
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=53.67 E-value=14 Score=22.35 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=27.5
Q ss_pred ccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCcccccc
Q 035093 6 FQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELS 51 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l 51 (73)
+|.|+..+++.|-..|=++++.--+=.-+=-.+..|.|||...-.+
T Consensus 20 EGvSvSav~RkLL~EyL~LeE~t~~ykr~~~~~~~i~v~~k~y~r~ 65 (106)
T 4hv0_A 20 EGTSVPAVIRKILKEYFGIEDRTRDYKRQDLEGSYIIVNGKKYYRI 65 (106)
T ss_dssp TTSCHHHHHHHHHHHHHTCCCCCC-------CCCEEEETTEEEEEE
T ss_pred cCCCHHHHHHHHHHHHhccccchhhHHhhCcCCcEEEECCEEEEEE
Confidence 5889999999988888655443222111111356688999875443
No 174
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=53.36 E-value=12 Score=20.92 Aligned_cols=60 Identities=10% Similarity=0.000 Sum_probs=33.4
Q ss_pred ccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 3 SLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.++...||.+|=+.|.... |....+|+..++.-+ +.--+.++ =+.|. ++.+++|.+|.++
T Consensus 20 r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~-~~g~~l~d--~~tL~--~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 20 RYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGI-TIEKNMAN--DKQLG--YYQCRDEFVIHVV 81 (86)
T ss_dssp EEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSC-EEESSCCT--TSBGG--GGTCCTTCEEEEE
T ss_pred EcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCC-ceeeEcCC--CCCHH--HCCCCCCCEEEEE
Confidence 3567789999999998877 444444432211100 11111111 12232 6789999999876
No 175
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=53.02 E-value=4.9 Score=29.71 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=34.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCC-----CCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEE-----KDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~d-----gD~V~i~P 68 (73)
+++.++.||-|+|..+. .. .+++ .=-+.|||++.-. .|.+++ |++|.|-|
T Consensus 47 v~~~~~~~vLd~L~~ik-~l-~fr~-----------sCam~ING~~~la----~t~~~~~~~~~~~~i~ieP 101 (514)
T 3kwl_A 47 LEYQEDQYLLDLLKQLK-GV-SYSE-----------NIALKINQIAVFE----DAKVSDLVAFFSKEWVLDP 101 (514)
T ss_dssp EECCTTCBHHHHHTTST-TC-CCCS-----------SCCEEETTEEECS----CCBHHHHHHHHCSEEEEEC
T ss_pred EeCCCCCcHHHHHHHhh-hC-eeec-----------cceEEECCEehhh----hhhHHHHhhccCCcEEEEE
Confidence 56778999999999887 11 1222 3457789998643 566544 78898877
No 176
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=52.27 E-value=18 Score=21.34 Aligned_cols=58 Identities=7% Similarity=0.013 Sum_probs=34.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccC--CcccCceEEEE-cCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKG--DSVRPGVLVLV-NDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~--g~lr~~v~ilv-Ng~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
++++...||.+|=..|.+.. |..+.+|+..+ |+ ++.-+ ++. +.|. ++.+++|++|.+.
T Consensus 22 ~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~----~~~~l~~D~--~tL~--~y~i~~g~~ihvv 84 (122)
T 1t0y_A 22 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQ----LKGELTDGA--KSLK--DLGVRDGYRIHAV 84 (122)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSS----EEEECCCCS--SBTT--TTTCCSSEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCc----cccccCCCc--CCHH--HCCCCCCCEEEEE
Confidence 45677899999998888876 44444444322 21 11111 221 2232 5678899988765
No 177
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=52.01 E-value=13 Score=26.04 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=22.0
Q ss_pred EEEcCccccccCC---------ccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQ---------LDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g---------~~t~l~dgD~V~i~Pp 69 (73)
|+|||+.+..++. ++.+++.||+|.||-+
T Consensus 295 v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 332 (367)
T 3mub_A 295 VLVDGQACPIVGRVSMDQITIRLPKLYPLGTKVTLIGS 332 (367)
T ss_dssp EEETTEEEEBCSCCCSSCEEEEESSCCCTTCEEEEEEE
T ss_pred EEECCEEeEEeChhcccEEEEECCCCCCCCCEEEEEeC
Confidence 8899998877764 1235889999999853
No 178
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=50.77 E-value=5 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.1
Q ss_pred EEEcCccccccCCccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
.++||+.+. .+....|++||.+.|+|-
T Consensus 72 ~~vng~~L~--k~~~~~L~~GD~LeLl~g 98 (143)
T 1yj5_C 72 STVGVHELK--PGLSGSLSLGDVLYLVNG 98 (143)
T ss_dssp CEETTEECC--TTCEEEECTTCEEESSSS
T ss_pred cEECCEEec--CCCEEEecCCCEEEEecC
Confidence 356775543 567789999999998774
No 179
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=50.05 E-value=16 Score=20.83 Aligned_cols=59 Identities=10% Similarity=-0.043 Sum_probs=33.2
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccC-CcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKG-DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~-g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++++..||.+|=+.|.+.. |..+.+|+-.+ |+. +.-+.++. +.| .++.+++|++|.++
T Consensus 32 ~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~---~~~L~~D~--~tL--~~Y~i~~gstihlv 93 (95)
T 2kjr_A 32 VKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTC---VSTMDNND--AQL--GYYANSDGLRLHVV 93 (95)
T ss_dssp EEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEE---EEECCCTT--SBH--HHHCCSSSCEEEEE
T ss_pred EEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcc---cceeCCCC--CCH--hHCCcCCCCEEEEE
Confidence 45677889999988888776 44444443321 210 10111221 122 15678999998875
No 180
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=49.06 E-value=31 Score=23.76 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=39.5
Q ss_pred ccCccCcHHHHHHHHHHhcCcc-----cc-cccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKE-----RP-EMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~-----~~-~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
...+.+||.|++..+.+++|+. .+ -||-.++.-+.++.+ -+++..+ .+.+++|+.+.+-|
T Consensus 18 ~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~-----~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 18 QFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALD-----YYMLRNGDTMEYRK 83 (371)
T ss_dssp EECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGG-----GGTCCTTCEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHH-----HhCCCCCceeeccC
Confidence 3467899999999999999864 12 366655555555544 3343222 34788888777654
No 181
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=49.02 E-value=9.4 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.2
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+-+. ..+.|++||.|.+-
T Consensus 33 V~VNG~~v~----~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 33 VFLNGKRAT----IGDQVKPGDVVKVN 55 (290)
T ss_dssp EEETTEECC----TTCEECTTCCEEET
T ss_pred EEECCEEcc----CCcCcCCCCEEEec
Confidence 678998762 46789999999874
No 182
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.59 E-value=39 Score=20.13 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=19.1
Q ss_pred cccCccCcHHHHHHHHHHhcCcc
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKE 24 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~ 24 (73)
+++.+..||.+|=+.+.+++|..
T Consensus 31 lev~~s~TV~~lK~kI~~~~p~d 53 (116)
T 1wgh_A 31 FLFSPNDSASDIAKHVYDNWPMD 53 (116)
T ss_dssp EEECTTCBHHHHHHHHHHSSSCC
T ss_pred EEECCcCHHHHHHHHHHHhcccc
Confidence 57788899999999999977643
No 183
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=47.96 E-value=12 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred cCceEEEEcCcccccc---CCccCccCC
Q 035093 36 RPGVLVLVNDCDWELS---GQLDTTLEE 60 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l---~g~~t~l~d 60 (73)
||.+.|.|||+.++.| +-.+|.|++
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~ 35 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAG 35 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESS
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcC
Confidence 7899999999999887 333445544
No 184
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=47.62 E-value=11 Score=26.08 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=14.9
Q ss_pred CccCCCCEEEEEecCCC
Q 035093 56 TTLEEKDVVVFISTLHG 72 (73)
Q Consensus 56 t~l~dgD~V~i~PpvaG 72 (73)
.+|+.||.|.|+.|-++
T Consensus 12 ~~L~~Gd~I~ivaPSs~ 28 (311)
T 1zl0_A 12 TWQPIDGRVALIAPASA 28 (311)
T ss_dssp CCCCCCSEEEEECCSBC
T ss_pred ccCCCcCEEEEEeCCCC
Confidence 67999999999999764
No 185
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=46.93 E-value=18 Score=20.03 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=22.2
Q ss_pred EEEEcC---c-cccccCCccCccCCCCEEEEEe
Q 035093 40 LVLVND---C-DWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 40 ~ilvNg---~-~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.|.++| . .|....-.+.+++.|+.|.++-
T Consensus 38 ~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~ 70 (84)
T 2k14_A 38 EVVIEGIGGTISKSAVSFDNQQISYGTTVLVVD 70 (84)
T ss_dssp EEEESCTTSCCCEEEEETTSCCBCSSCEEEEEE
T ss_pred EEEEeeECccEEEEEEeCCCCccCCCCEEEEEE
Confidence 488899 6 8887653345699999998863
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=46.57 E-value=8.5 Score=27.29 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.7
Q ss_pred ccCCccCccCCCCEEEE
Q 035093 50 LSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 50 ~l~g~~t~l~dgD~V~i 66 (73)
.+.|.++.++|||.|.|
T Consensus 343 r~egk~y~v~dgDii~f 359 (363)
T 1jal_A 343 RLEGKDYIVQDGDVMHF 359 (363)
T ss_dssp EEECTTCBCCTTCEEEE
T ss_pred eccCCccEecCCCEEEE
Confidence 45789999999999877
No 187
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=46.40 E-value=36 Score=23.79 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=32.2
Q ss_pred cCccCcHHHHHHHHHHhcCcc-cccccccCCcccCceEEEEcCcccccc---CCccCccCCCCEEEE
Q 035093 4 LTFQLIMKDLLSWVGTNLIKE-RPEMFMKGDSVRPGVLVLVNDCDWELS---GQLDTTLEEKDVVVF 66 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~~~~-~~~l~~~~g~lr~~v~ilvNg~~i~~l---~g~~t~l~dgD~V~i 66 (73)
+.+|.|..||-+.+.+..-.. ....+ .|---| +.+-+|..-.-.. ..-+++|++||.|.|
T Consensus 66 ikpG~t~~el~~~~e~~i~~~~~~~~~--~g~~FP-~ciSvN~~v~Hg~P~~~~~~~~L~~GDiV~I 129 (358)
T 3fm3_A 66 VRPGITLLEIVRSIEDSTRTLLKGERN--NGIGFP-AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKI 129 (358)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHTTTSGG--GGEEEE-EEEEETTEEECCCCCTTCCCCBCCTTCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCcc--cCCCCC-cEEeeCCEEEecCCCCCCCCeEecCCCEEEE
Confidence 457888888865554322111 00011 010012 5678888654222 224679999999876
No 188
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=46.04 E-value=17 Score=19.91 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=23.0
Q ss_pred eEEEEcCccccccCCc-cCccCCCCEEEEEe
Q 035093 39 VLVLVNDCDWELSGQL-DTTLEEKDVVVFIS 68 (73)
Q Consensus 39 v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~P 68 (73)
=.|.++|..|+..... +.+++.|+.|.+.-
T Consensus 40 G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 40 GQVRLDGSIWSARSMDPTHTFAEGEIVSVID 70 (82)
T ss_dssp CEEEETTEEEEEEESSTTCCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEECCCCCccCCCCEEEEEE
Confidence 4588899999976422 36799999998863
No 189
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=46.03 E-value=7.2 Score=23.29 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=23.1
Q ss_pred CCcccC-ceEEEEcCccccccC--CccCcc---CCCCEEEEE
Q 035093 32 GDSVRP-GVLVLVNDCDWELSG--QLDTTL---EEKDVVVFI 67 (73)
Q Consensus 32 ~g~lr~-~v~ilvNg~~i~~l~--g~~t~l---~dgD~V~i~ 67 (73)
.+.|++ ++++.|||++++.+. ..-..| +.|+.|.+.
T Consensus 47 ~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~ 88 (113)
T 3soe_A 47 CQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88 (113)
T ss_dssp STTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 456775 599999999997653 222233 347777664
No 190
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=45.73 E-value=13 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEcCccccccCC---------ccCccCCCCEEEEEec
Q 035093 41 VLVNDCDWELSGQ---------LDTTLEEKDVVVFIST 69 (73)
Q Consensus 41 ilvNg~~i~~l~g---------~~t~l~dgD~V~i~Pp 69 (73)
|+|||+.+..++. ++.+++.||+|.||-+
T Consensus 299 v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 336 (371)
T 3e5p_A 299 VLVNGKRCEIVGRVCMDQCMIRLAEEVPVGPVVTLVGK 336 (371)
T ss_dssp EESSSCEEEEESCCCSSCEEEEESSCCCSCCEEEEEEE
T ss_pred EEECCEEeEEeceecccEEEEECCCCCCCCCEEEEEcC
Confidence 8889998777664 1235889999999853
No 191
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=44.89 E-value=45 Score=23.07 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=32.5
Q ss_pred cccCccCcHHHHHHHHHHhc--Ccccccccc--cCCcccCceEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFM--KGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~--~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+++++..||.+|=+.|.+.. |..+.+|.. -.|+. +-++..+. +..+++|..|.++-+
T Consensus 19 v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~------l~D~~~L~-----~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 19 VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKT------AADNVKIS-----ALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSB------CCTTSBTT-----SSCCC--CEEEEECC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcc------cCccccHH-----HcCCCCCCEEEEEcc
Confidence 57788899999988888766 555555552 12321 11233322 345777777777643
No 192
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=44.07 E-value=12 Score=22.01 Aligned_cols=16 Identities=25% Similarity=0.107 Sum_probs=14.5
Q ss_pred cCceEEEEcCcccccc
Q 035093 36 RPGVLVLVNDCDWELS 51 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l 51 (73)
||.+.|.|||+.++.|
T Consensus 8 rP~vtvkI~Gq~~eaL 23 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEAL 23 (99)
T ss_dssp CCEEEEEETTEEEEEE
T ss_pred CCEEEEEECCEEEEEE
Confidence 7899999999998876
No 193
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.05 E-value=19 Score=22.01 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=32.0
Q ss_pred cccCccCcHHHHHHHHHHhc--Cccccc-ccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++.+.+||++|=+.++... |..+-+ +|. |+ +|-|++-.. +..+++|..|.+.
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~--GK------iLKD~eTL~-----~~gIk~g~TIhLv 86 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS--GK------ILKNNETLV-----QHGVKPQEIVQVE 86 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEEEEET--TE------EECSSCCHH-----HHSCCSSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC--Ce------EcCCcchHH-----HcCCCCCCEEEEE
Confidence 46778899999999999877 332222 332 11 334433332 3467888877653
No 194
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A
Probab=43.81 E-value=59 Score=21.91 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=31.1
Q ss_pred cCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC--ccCccCCCCEEEE
Q 035093 4 LTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ--LDTTLEEKDVVVF 66 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g--~~t~l~dgD~V~i 66 (73)
+.+|.|-.|+-+.+....-+.. +...-..++-+|..-.-.... -+.+|++||.|.|
T Consensus 24 i~pG~te~el~~~~~~~~~~~G-------~~~~fp~~vs~n~~~~H~~p~~~~~~~L~~GDiv~i 81 (295)
T 1xgs_A 24 ARPGMLLLELAESIEKMIMELG-------GKPAFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKI 81 (295)
T ss_dssp CCTTCBHHHHHHHHHHHHHHTT-------CEESSCCEEEETTEEECCCCCTTCCCBCCTTCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCCCCCcEEeeCCccccccCCCCCCccccCCCEEEE
Confidence 3457777776665554332111 010001456788775433332 2679999999876
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=43.70 E-value=8 Score=27.30 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.7
Q ss_pred ccCCccCccCCCCEEEE
Q 035093 50 LSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 50 ~l~g~~t~l~dgD~V~i 66 (73)
.+.|.++.++|||.|.|
T Consensus 348 r~~gk~y~v~dgdi~~~ 364 (368)
T 2dby_A 348 RLEGKDYEVQDGDVIYV 364 (368)
T ss_dssp EEECTTCBCCTTEEEEE
T ss_pred cccCCCceecCCCEEEE
Confidence 45789999999999877
No 196
>2akk_A RP4479, PHNA-like protein; beta-strand protein, structural genomics, PSI, protein struc initiative; NMR {Rhodopseudomonas palustris} SCOP: b.34.11.2
Probab=43.59 E-value=13 Score=21.06 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=11.3
Q ss_pred ccCccCCCCEEEEE
Q 035093 54 LDTTLEEKDVVVFI 67 (73)
Q Consensus 54 ~~t~l~dgD~V~i~ 67 (73)
--+.|++||.|+++
T Consensus 9 nGn~L~dGDsVtlI 22 (74)
T 2akk_A 9 NGALLADGDNVSLI 22 (74)
T ss_dssp SCCBCCTTEEEEES
T ss_pred CCCCccCCCEEEEE
Confidence 35789999999886
No 197
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=43.44 E-value=45 Score=19.03 Aligned_cols=59 Identities=12% Similarity=-0.048 Sum_probs=32.2
Q ss_pred cccCccCcHHHHHHHHHHhc--Ccccccc-cccC-CcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEM-FMKG-DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l-~~~~-g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
+++++..||.+|=+.|.++. |....+| |... |+. +.-|.++ =+.| .++.+++|++|.++
T Consensus 31 ~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~---~~~L~~D--~~tL--~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 31 ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSK---VAVLSDD--SRPL--GFFSPFDGFRLHII 93 (97)
T ss_dssp EEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCB---CCCSSGG--GSCH--HHHCCCSCCEEEEE
T ss_pred EEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcc---cceecCC--cCCH--HHCCCCCCCEEEEE
Confidence 46778899999988888776 3333333 3221 110 0000011 1112 15678999998775
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=43.02 E-value=10 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=16.3
Q ss_pred ccCCccCccCCCCEEEEEecC
Q 035093 50 LSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 50 ~l~g~~t~l~dgD~V~i~Ppv 70 (73)
.+.|.++.++|||.|.|-=-+
T Consensus 369 r~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 369 RQQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EEECTTCBCCTTCEEEEEEC-
T ss_pred cccCCCceeeCCCEEEEEecC
Confidence 357899999999999885433
No 199
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=42.74 E-value=15 Score=20.98 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=16.6
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++-+|.|++|+|....++-
T Consensus 16 V~VrpG~tlrdaL~KaLk~R 35 (77)
T 1c1y_B 16 VNVRNGMSLHDCLMKALKVR 35 (77)
T ss_dssp EECCTTCBHHHHHHHHHHTT
T ss_pred EEecCCcCHHHHHHHHHHHc
Confidence 67889999999999877643
No 200
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=42.72 E-value=3.8 Score=24.67 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=13.8
Q ss_pred EEEcCccccccCCccCccCCCCE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDV 63 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~ 63 (73)
|+|||+.+. ...|.+||.
T Consensus 64 VFVNGqrv~-----~~~I~~gDt 81 (102)
T 3uv0_A 64 IFVNDQEET-----VVDIGMENA 81 (102)
T ss_dssp EEETTEEES-----EEEECGGGC
T ss_pred EEECCEEee-----eEEccCCcc
Confidence 789999882 566778776
No 201
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=42.64 E-value=19 Score=20.99 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=18.7
Q ss_pred cccCccCcHHHHHHHHHHhcC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI 22 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~ 22 (73)
+.++++.|+.|+|+.-|+++.
T Consensus 24 VKvtp~t~L~~VL~eaC~K~g 44 (90)
T 2al3_A 24 VKVTPSTVLLQVLEDTCRRQD 44 (90)
T ss_dssp ECCCTTSBHHHHHHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHhC
Confidence 567899999999999999884
No 202
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=42.45 E-value=3.6 Score=27.37 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=33.7
Q ss_pred ccCcHHHHHHHHHHhcCcccc-cccc-cCCccc---CceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 6 FQLIMKDLLSWVGTNLIKERP-EMFM-KGDSVR---PGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~~~~~~~-~l~~-~~g~lr---~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.|.|-..||..+..+...+-. ..|. +-...+ .+=.|.|||+-+.. ..+.+++||+|.+-.
T Consensus 82 kG~tg~~ll~lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~---ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 82 KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNI---ASYQVSPNDVVSIRE 146 (205)
T ss_dssp SSCHHHHHHHHHHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCC---TTCBCCTTBCCBCCS
T ss_pred CCCcHHHHHHhhHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEcc---CCcCcCCCCEEEecC
Confidence 366766677766655543321 1121 111111 12237889987742 368899999987643
No 203
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structur comparisons, virus-viral protein complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=42.30 E-value=19 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.0
Q ss_pred cCceEEEEcCccccccCCccCccCCCCEEEEEecCCC
Q 035093 36 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG 72 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaG 72 (73)
.|+-++-++|++||. ..|-+.||.|.|..-+-|
T Consensus 218 ~~~~~~~ldg~~irl----~~pc~~gd~v~i~ty~dg 250 (602)
T 2fl8_A 218 NEGELVPLDGFNIRL----RQPCNIGDTVQIETFMDG 250 (602)
T ss_pred CCCceeeccCceeee----cCccccCCEEEEEEeecc
Confidence 356679999999984 689999999999876654
No 204
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=41.69 E-value=48 Score=23.06 Aligned_cols=55 Identities=5% Similarity=0.130 Sum_probs=33.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++++..||.+|-+.|.+.. |..+.+|+-. |+ ++-+++.+. +..+++|+.|.++-
T Consensus 248 leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~-Gk------~L~D~~TLs-----dygI~~gstL~Lvl 304 (307)
T 3ai5_A 248 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRTLS-----DYNIQKESTLHLVL 304 (307)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCTTSBTG-----GGTCCTTCEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEeC-Ce------ecCCCCCHH-----HcCCCCCCEEEEEE
Confidence 56778899999999998766 3333334322 22 122332222 55688999988764
No 205
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=41.67 E-value=5.9 Score=26.98 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=0.6
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCC-ccCccCCCCEEEEEecCCCC
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g-~~t~l~dgD~V~i~PpvaGG 73 (73)
.+....+++.|.++.+++.. --...+..+-+|+.|..-+- .+-.++|||+|.+|..--||
T Consensus 36 KIKrtTpL~KLM~AYcERqG-----------Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 36 KIKKTTPLRRLMEAFAKRQG-----------KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -----------------------------------------------------------------------C
T ss_pred EEccCChHHHHHHHHHHHhC-----------CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 33444555556665555542 11234556667777653211 12257999999999877666
No 206
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=41.53 E-value=12 Score=20.59 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=21.6
Q ss_pred cc-CceEEEEcCccccccCCcc--CccCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLD--TTLEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~--t~l~dgD~V~i 66 (73)
|+ -.+++-|||+.+....-.+ ..++.|+.|.+
T Consensus 47 L~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l 81 (93)
T 2dls_A 47 VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVAL 81 (93)
T ss_dssp CCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEE
Confidence 44 4788999999987654332 23567887765
No 207
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=41.17 E-value=50 Score=19.36 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccC----ccCCCCEEEEEec
Q 035093 7 QLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT----TLEEKDVVVFIST 69 (73)
Q Consensus 7 ~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t----~l~dgD~V~i~Pp 69 (73)
.+.++-|.++.|++-. --...+..+.+|.+|.. .+| .+++||.|-.+-.
T Consensus 40 tt~l~KL~~aYc~r~g-----------v~~~sirFlfDG~rI~~---~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 40 SEPLQSVVDHMATHLG-----------VSPSRILLLFGETELSP---TATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp SSCTHHHHHHHHHHHT-----------SCGGGEEEEETTEECCT---TSCHHHHTCCSSCEEEEEEC
T ss_pred CChHHHHHHHHHhhcC-----------CChhhEEEEECCcCCCC---CCCHhHcCCCCCCEEEEEEe
Confidence 3445556666555442 11236778889988854 355 5799999988754
No 208
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=41.08 E-value=32 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.7
Q ss_pred ccccCCccCccCCCCEEEEEec
Q 035093 48 WELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 48 i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+.....-+|.|+.||.+.++-+
T Consensus 161 ~i~~P~~dt~L~~GD~Liv~g~ 182 (205)
T 1vct_A 161 WIFGPNENFKIRAGDVLIGRGT 182 (205)
T ss_dssp EEESCCTTCBCCTTCEEEEEEC
T ss_pred EEeCCCCCCEECCCCEEEEEEC
Confidence 3334667999999999998743
No 209
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=40.73 E-value=25 Score=20.69 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.0
Q ss_pred cCCccCccCCCCEEEEEec
Q 035093 51 SGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 51 l~g~~t~l~dgD~V~i~Pp 69 (73)
-+.+|-.|+.||.|+++..
T Consensus 29 tq~~dl~l~~GdlVAVl~k 47 (92)
T 1ug1_A 29 AQDLDVSLLEGDLVGVIKK 47 (92)
T ss_dssp CSSSCCCCCTTCEEEEEES
T ss_pred CCceeeeecCCCEEEEEec
Confidence 4677889999999999864
No 210
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=40.43 E-value=25 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred eEEEEcCccccccCC--ccC-------ccCCCCEEEEEec
Q 035093 39 VLVLVNDCDWELSGQ--LDT-------TLEEKDVVVFIST 69 (73)
Q Consensus 39 v~ilvNg~~i~~l~g--~~t-------~l~dgD~V~i~Pp 69 (73)
--|+|||+.+..++. +|. .++.||+|.||-+
T Consensus 301 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~GD~V~l~G~ 340 (395)
T 3hur_A 301 SSVIINGKRMPIIGRITMDQTMVKLDRKYPIGTRVTLIGK 340 (395)
T ss_dssp EEEEETTEEEEBCSCCCSSCEEEECSSCCCTTCEEEEEES
T ss_pred CeEEECCEEEEEECceeccEEEEECCCCCCCCCEEEEEcC
Confidence 358899998877764 111 5788999999854
No 211
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=39.91 E-value=13 Score=21.99 Aligned_cols=20 Identities=0% Similarity=-0.017 Sum_probs=17.7
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++.+..|++|+++.|+.+.
T Consensus 24 i~V~~~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 24 VEVAAGATARHVCEMLVQRA 43 (100)
T ss_dssp EEECTTCCHHHHHHHHHCSS
T ss_pred EEECCCCcHHHHHHHHHHHc
Confidence 57889999999999999866
No 212
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=39.79 E-value=27 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=21.7
Q ss_pred eEEEEcCccccccCC--cc------C----ccCCCCEEEEEe
Q 035093 39 VLVLVNDCDWELSGQ--LD------T----TLEEKDVVVFIS 68 (73)
Q Consensus 39 v~ilvNg~~i~~l~g--~~------t----~l~dgD~V~i~P 68 (73)
--|+|||+.+..++- +| | .++.||+|.||-
T Consensus 303 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~~~~Gd~v~l~G 344 (376)
T 3kw3_A 303 GTVYFNGHKLPIVGHISMDSIIVDATDLDKKPQRGDWVELIG 344 (376)
T ss_dssp CEEEETTEEEEBCSCCCSSCEEEECTTCSSCCCTTCEEEEEB
T ss_pred ceEEECCEEEEEeCeeccceEEEEcCCCcccCCCCCEEEEEC
Confidence 457899988877763 11 1 277899999984
No 213
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A
Probab=39.62 E-value=38 Score=24.04 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=20.1
Q ss_pred ceEEEEcCccccccC--C-ccCccCCCCEEEE
Q 035093 38 GVLVLVNDCDWELSG--Q-LDTTLEEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~--g-~~t~l~dgD~V~i 66 (73)
.+.+-+|..-.-... + .+.+|++||.|.|
T Consensus 84 ~~~vS~N~~v~H~~P~~~d~~~~L~~GDiV~I 115 (401)
T 2q8k_A 84 PTSISVNNCVCHFSPLKSDQDYILKEGDLVKI 115 (401)
T ss_dssp EEEEEETTEEECCCCCTTSCCCBCCTTCEEEE
T ss_pred CcEEeCCcccccCCCCCCCCCcccCCCCEEEE
Confidence 366778887654443 3 2478999999876
No 214
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=39.10 E-value=8 Score=21.11 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=19.5
Q ss_pred cc-CceEEEEcCccccc--cCCccCccCC-CCEEEE
Q 035093 35 VR-PGVLVLVNDCDWEL--SGQLDTTLEE-KDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~--l~g~~t~l~d-gD~V~i 66 (73)
|+ ..+++-|||+++.. ...+...++. |+.|.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44 47889999999973 2223333433 666655
No 215
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=38.94 E-value=48 Score=19.75 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=23.3
Q ss_pred ccccCCc-ccCceEEEEc-Ccc--ccccCCccCccCCCCEEEE
Q 035093 28 MFMKGDS-VRPGVLVLVN-DCD--WELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 28 l~~~~g~-lr~~v~ilvN-g~~--i~~l~g~~t~l~dgD~V~i 66 (73)
++|.+|+ ..+.++--|- +.+ +..+++..-.+++||.|.|
T Consensus 8 V~D~dGE~p~~~~I~~Is~~~~g~Vt~~~~~~H~l~dGD~V~F 50 (112)
T 2v31_A 8 LTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSF 50 (112)
T ss_dssp CCCCCCSSCCEEEEEEECCSSSEEEEECTTCCCCCCTTCEEEE
T ss_pred EECCCCCccceeeeeeeecCCCcEEEEecCCccCCcCCCEEEE
Confidence 5666666 4445544451 111 4455555567999999876
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=38.77 E-value=9 Score=27.36 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.4
Q ss_pred ccCCccCccCCCCEEEE
Q 035093 50 LSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 50 ~l~g~~t~l~dgD~V~i 66 (73)
.+.|.++.++|||.|.|
T Consensus 371 r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 371 LTKGKEYVMESGDIAHW 387 (392)
T ss_dssp CEEETTCBCCTTCEEEC
T ss_pred cccCCceeeeCCCEEEE
Confidence 34788999999999876
No 217
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=38.74 E-value=27 Score=23.94 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=29.8
Q ss_pred cCceEEEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 36 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
...+.|.++|+.-.+--|-.-.|++|..|+|.|-+
T Consensus 154 ~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~ 188 (246)
T 3kmh_A 154 DSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGL 188 (246)
T ss_dssp CSCEEEEETTEEEEECTTCEEEECTTCEEEECTTE
T ss_pred CCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCC
Confidence 45788999999988888888899999999998853
No 218
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=38.66 E-value=22 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=18.5
Q ss_pred cccCccCcHHHHHHHHHHhcC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI 22 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~ 22 (73)
+-+|+..+..+|++.+.++..
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~ 26 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKIS 26 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTT
T ss_pred EEeCCCCCHHHHHHHHHHHHc
Confidence 457889999999999999885
No 219
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=38.50 E-value=2.9 Score=25.68 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=17.9
Q ss_pred EEcCccccccCCccCccCCCCEEEEEec
Q 035093 42 LVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 42 lvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
++||+.+ ..+....|++||.+.++|-
T Consensus 80 ~vng~~l--~k~~~~~L~~GD~l~Ll~g 105 (119)
T 1ujx_A 80 TVGVQEL--KPGLSGSLSLGDVLYLVNG 105 (119)
T ss_dssp BSSSSBC--CTTCEEEEETTCCCBCBTT
T ss_pred EECCEEe--cCCCEEEecCCCEEEEecC
Confidence 4455443 3566778999999988764
No 220
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=38.33 E-value=28 Score=24.61 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=22.8
Q ss_pred eEEEEcCccccccCC--ccC-------ccCCCCEEEEEec
Q 035093 39 VLVLVNDCDWELSGQ--LDT-------TLEEKDVVVFIST 69 (73)
Q Consensus 39 v~ilvNg~~i~~l~g--~~t-------~l~dgD~V~i~Pp 69 (73)
--|+|||+....++. +|. .++.||+|.||-+
T Consensus 295 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~Gd~V~l~G~ 334 (382)
T 4a3q_A 295 SFVNVNGHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDN 334 (382)
T ss_dssp CEEEETTEEEEBCSCCCSSCEEEEECTTCCTTCEEEEECS
T ss_pred CEEEECCEEEEEeeeeeccEEEEECCCCCCCCCEEEEEeC
Confidence 458899998877764 111 5788999999854
No 221
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=37.95 E-value=37 Score=19.47 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=23.9
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCcc
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCD 47 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~ 47 (73)
-+|...|+++++..|+++.- +.. ...+-++||..-
T Consensus 25 lVp~~~tv~~~~~~lRkrL~-l~~---------~~alFlyVnn~~ 59 (91)
T 4gdk_A 25 AVERTRTIQGLIDFIKKFLK-LVA---------SEQLFIYVNQSF 59 (91)
T ss_dssp EEETTCBHHHHHHHHHHHTT-CCS---------SSCCEEEETTTB
T ss_pred EcCCCCCHHHHHHHHHHHhC-CCC---------CCeEEEEECCcc
Confidence 46788999999999988762 211 123557888753
No 222
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=37.08 E-value=7.1 Score=25.60 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEecCCCC
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
|++.+..||.+|=+.+.+.. |....+|+- +|+..+ . +..|.+++.|.++..+-||
T Consensus 15 LeV~~sdTV~~LK~kI~~keGIP~~qQRLIf-------------~GK~Le---D-~~TLs~~STLhLvlRLrGG 71 (189)
T 2xzm_9 15 YTLEQGTSVLDLKSQISQDMGFEIDMMTLVN-------------NGFIAP---N-TELVTDDVTYYLSLKLLGG 71 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEECCcChHHHHHHHHHHHhCcChhHEEEEe-------------cCeECC---C-CCcccCCCEEEEEEecCCC
Confidence 56777788888877777654 222222221 333221 1 2233377888887777665
No 223
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=36.35 E-value=23 Score=20.35 Aligned_cols=19 Identities=0% Similarity=-0.045 Sum_probs=16.2
Q ss_pred ccCcHHHHHHHHHHhcCcc
Q 035093 6 FQLIMKDLLSWVGTNLIKE 24 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~~~~~ 24 (73)
...||.++++.|.++|+.-
T Consensus 54 G~rtv~eIv~~L~~~y~~~ 72 (95)
T 3g2b_A 54 GTQSLAQIAQTLAAEFDAD 72 (95)
T ss_dssp SSSCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHcCCc
Confidence 3579999999999999754
No 224
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.25 E-value=33 Score=20.72 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=23.5
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCc
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDC 46 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~ 46 (73)
-+|...||++++..|.++.- +.. + ..+-++||+.
T Consensus 53 lVp~~~tv~qf~~~iRkrl~-l~~----~-----~alFl~Vn~~ 86 (119)
T 3h9d_A 53 LVPSDLTVGQFVSVLRKRVQ-LEA----E-----SALFVYTNDT 86 (119)
T ss_dssp EEETTCBHHHHHHHHHHHHT-CCT----T-----SCCEEEETTE
T ss_pred EcCCCCCHHHHHHHHHHHhC-CCc----c-----ceEEEEECCc
Confidence 36788999999999988762 211 1 1355788875
No 225
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=36.18 E-value=3.4 Score=23.68 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=20.7
Q ss_pred cc-CceEEEEcCccccccCCccCccCCCCEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTTLEEKDVVV 65 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~l~dgD~V~ 65 (73)
|+ ..+++-|||+.+.....+...++.|+.|.
T Consensus 53 l~~GD~I~~ing~~v~~~~~~~~~l~~g~~v~ 84 (112)
T 2p3w_A 53 IQDGDIIVKVNGRPLVDSSELQEAVLTESPLL 84 (112)
T ss_dssp CCTTCEEEEETTEECCSHHHHHHHHHHCSSEE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHhCCCeEE
Confidence 44 47889999999876655544455566443
No 226
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=36.03 E-value=30 Score=18.83 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=16.3
Q ss_pred cCccCcHHHHHHHHHHhc
Q 035093 4 LTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~ 21 (73)
+++..||.+|-+.+.++.
T Consensus 17 l~~~~Tv~~Lk~~I~~~~ 34 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAIT 34 (86)
T ss_dssp CCTTCBHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 788899999999999875
No 227
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=36.01 E-value=18 Score=24.88 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=35.7
Q ss_pred cCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccC------CccCccCCCCEEEEEec
Q 035093 7 QLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG------QLDTTLEEKDVVVFIST 69 (73)
Q Consensus 7 ~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~------g~~t~l~dgD~V~i~Pp 69 (73)
+.|+.++++.|+++|. +....-...+...+++.+--|..++.+|. |.--.++.+..+.|++|
T Consensus 116 ~~tl~~Iv~~ia~~~G-l~~~~~~~~~~~i~~~~~q~~eSd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 183 (361)
T 3cdd_A 116 NQTLTQIADIVCKPFG-IKVIVNTDVGEPFQRIQIEQGETPHELLARLAKQRGVLLTSDTFGNLVITRA 183 (361)
T ss_dssp EECHHHHHHHHHGGGT-CCEEECSCCCSCEEEEECCTTCCHHHHHHHHHHTTTCEEEECTTCCEEEECS
T ss_pred CCCHHHHHHHHHHHhC-CcEEeccCCCCccceEEecCCCCHHHHHHHHHHhCCcEEEECCCCeEEEeCC
Confidence 5799999999999983 44332111223333443334777787773 32333443347777766
No 228
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=35.37 E-value=30 Score=21.31 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.8
Q ss_pred CCcccCceEEEEcCcccccc---CCccCccCC
Q 035093 32 GDSVRPGVLVLVNDCDWELS---GQLDTTLEE 60 (73)
Q Consensus 32 ~g~lr~~v~ilvNg~~i~~l---~g~~t~l~d 60 (73)
+..=||.+.+.|||+.+++| +-.+|.|++
T Consensus 18 d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~ 49 (132)
T 3slz_A 18 EPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQ 49 (132)
T ss_dssp CCCCSSEEEEEETTEEEEEEECTTCSSCEECS
T ss_pred CccCCCEEEEEECCEEEEEEEeCCCCeEEEcc
Confidence 44568999999999999887 333345544
No 229
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=35.05 E-value=8.1 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=0.0
Q ss_pred EEEcCccccccCCccCccCCCCEEEEE
Q 035093 41 VLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
|.|||+.+.. .+++|+.||.|.+.
T Consensus 44 V~VNG~~v~~---~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 44 VLVNGKVCDK---PKEKVLGGEQVAIN 67 (325)
T ss_dssp ---------------------------
T ss_pred EEECCEEccC---CCCEeCCCCEEEEe
Confidence 6789987432 37889999999885
No 230
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=34.63 E-value=37 Score=19.56 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=23.8
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCc
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDC 46 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~ 46 (73)
-+|...|+++++..|+++.. + ..+-++||..
T Consensus 28 lV~~~~t~~~~v~~lRkrL~-l------------~alFlyVNn~ 58 (91)
T 3w1s_C 28 KISMSQSFAMVILFLKRRLK-M------------DHVYCYINNS 58 (91)
T ss_dssp EEETTSBHHHHHHHHHHHHT-C------------SCCEEEETTT
T ss_pred EcCCCCCHHHHHHHHHHhhC-C------------ceEEEEECCc
Confidence 46788999999999998763 1 1466888875
No 231
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=33.95 E-value=40 Score=21.00 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=17.7
Q ss_pred cCccccccCCccCccCCCCEEEEEec
Q 035093 44 NDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 44 Ng~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+|+.+ ...-+|.|+.||.+.++-+
T Consensus 181 ~~~~~--~p~~~~~l~~gD~l~v~g~ 204 (218)
T 3l4b_C 181 GGVLV--VPRGDTEILSGDKLYVIVS 204 (218)
T ss_dssp SSCEE--CCCTTCBCCTTEEEEEEEE
T ss_pred CCEEE--cCCCCCEECCCCEEEEEEC
Confidence 45444 3667999999999988743
No 232
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=33.92 E-value=9 Score=21.44 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=20.1
Q ss_pred cc-CceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
|+ ..+++-|||+.+.....+...+ +.|+.|.+
T Consensus 18 L~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l 53 (91)
T 2kjp_A 18 IEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53 (91)
T ss_dssp CCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEE
Confidence 44 4789999999987554333333 24666544
No 233
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.91 E-value=17 Score=21.18 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=16.6
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++-+|.|++|+|....++-
T Consensus 22 V~VrpG~tlrdaL~KaLk~R 41 (86)
T 1wxm_A 22 VTVRDGMSVYDSLDKALKVR 41 (86)
T ss_dssp EECCSSCBSHHHHHHHHHTT
T ss_pred EEecCCcCHHHHHHHHHHHc
Confidence 67889999999998877643
No 234
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=33.39 E-value=75 Score=18.69 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.5
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++-+|.|++|+|....+.-
T Consensus 32 V~VrpG~tlrdAL~KaLk~R 51 (95)
T 2l05_A 32 VPARCGVTVRDSLKKALMMR 51 (95)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHHHHc
Confidence 67889999999998877643
No 235
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.27 E-value=17 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=20.2
Q ss_pred EEEcCccccccCCccCccCCC--CEEEE--EecCC
Q 035093 41 VLVNDCDWELSGQLDTTLEEK--DVVVF--ISTLH 71 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~dg--D~V~i--~Ppva 71 (73)
|.|||+-+.. ..+.+..| |.|.+ .+|+.
T Consensus 130 V~VNg~~V~~---Ps~~V~~~~eD~I~v~~~s~i~ 161 (180)
T 3j20_D 130 IEVNGQIIRS---PSYLVLKEEEDTITYARTSPFA 161 (180)
T ss_dssp CEESSSBCCC---SSCCCCTGGGGCEECSSCSSSS
T ss_pred eEECCEEeCC---CCcccCCCCCCEEEEeCCCccc
Confidence 6789987753 36788888 88988 44444
No 236
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=33.25 E-value=36 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=22.8
Q ss_pred eEEEEcCccccccCC--cc--------C-ccCCCCEEEEEec
Q 035093 39 VLVLVNDCDWELSGQ--LD--------T-TLEEKDVVVFIST 69 (73)
Q Consensus 39 v~ilvNg~~i~~l~g--~~--------t-~l~dgD~V~i~Pp 69 (73)
-.|+|||+.+..++. +| . .++.||+|.||-+
T Consensus 297 ~~v~i~g~~~pivGrv~MD~~~vDvt~~~~~~~Gd~v~l~G~ 338 (374)
T 4ecl_A 297 SYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGK 338 (374)
T ss_dssp CEEEETTEEEEEESCCCSSCEEEECTTCSSCCTTCEEEEEEE
T ss_pred eEEEECCEEEEEEChhhhceEEEEcCCCCCCCCCCEEEEEeC
Confidence 578899998877764 11 1 4788999999853
No 237
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=32.91 E-value=78 Score=20.23 Aligned_cols=55 Identities=11% Similarity=-0.107 Sum_probs=31.3
Q ss_pred cccCc--cCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCC
Q 035093 2 LSLTF--QLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEE 60 (73)
Q Consensus 2 ~~l~~--~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~d 60 (73)
+++++ +.||-++++.+....|.+.-+ +.-.-..-.-=.|.|||+.+. -=.|++.+
T Consensus 25 v~~~~~~~~tll~~l~~~~~~~~~l~~~-~~C~~g~Cg~C~v~v~G~~~l---aC~~~~~~ 81 (238)
T 2wdq_B 25 LEADEGRDMMLLDALIQLKEKDPSLSFR-RSCREGVCGSDGLNMNGKNGL---ACITPISA 81 (238)
T ss_dssp EECCTTCCCBHHHHHHHHHHHCTTCCCC-CSSSSSSSCTTEEEETTEEEE---GGGCBGGG
T ss_pred eecCCCCCChHHHHHHHhcccCCCcccc-ccCCCCCCCCCEEEECCEEEc---ccccchhh
Confidence 56777 999999999987654433211 111111122335788998754 22445544
No 238
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=32.70 E-value=39 Score=20.62 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=16.4
Q ss_pred ccCccCcHHHHHHHHHHhc
Q 035093 3 SLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~ 21 (73)
-+|...||++++..|.++.
T Consensus 58 lVp~~~tv~qf~~~IRkrl 76 (125)
T 3m95_A 58 LVPSDLTVGQFYFLIRKRI 76 (125)
T ss_dssp EEETTSBHHHHHHHHHHHT
T ss_pred EcCCCCEeeeehhhhHhhc
Confidence 3678899999999998876
No 239
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=32.69 E-value=29 Score=24.21 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=34.7
Q ss_pred ccCcHHHHHHHHHHhcCccccc-ccccCCcccCceEEEEcCccccccC------CccCccCCCCEEEEEec
Q 035093 6 FQLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELSG------QLDTTLEEKDVVVFIST 69 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~~~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~------g~~t~l~dgD~V~i~Pp 69 (73)
.+.|+.++++.|++.|..+... +-.+.+.....+.+--|..||.+|. |.-..+..+..+.|.+|
T Consensus 109 ~~~Tl~~Iv~~Ia~~~G~L~~~~v~~~~~~~~~~~~~q~~ESd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 179 (381)
T 3d37_A 109 KGMTVLDAAKKLAAPWPQIKAVVLKAENNPALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGA 179 (381)
T ss_dssp BTSBHHHHHHHHHTTCTTSCCEEEESSCCCBBCCCCCCTTCBHHHHHHHHHHHTTCEEEECTTSCEEEECC
T ss_pred cCCCHHHHHHHHHHhcCCceEEeeccCCCCccceEEeeCCCCHHHHHHHHHHHCCCEEEECCCCeEEEeCC
Confidence 3689999999999988424433 2222233333343434667776663 22223322235666655
No 240
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.32 E-value=17 Score=22.95 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.7
Q ss_pred CCccCccCCCCEEEEE
Q 035093 52 GQLDTTLEEKDVVVFI 67 (73)
Q Consensus 52 ~g~~t~l~dgD~V~i~ 67 (73)
+---+.|++||.|+++
T Consensus 71 DanGn~L~dGDsVtvI 86 (138)
T 2akl_A 71 DSVGNVLQDGDTITVI 86 (138)
T ss_dssp CTTSCBCCTTCEEECC
T ss_pred cCCCCCccCCCeEEEE
Confidence 4445789999999986
No 241
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=32.18 E-value=17 Score=21.44 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.4
Q ss_pred cCceEEEEcCcccccc
Q 035093 36 RPGVLVLVNDCDWELS 51 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l 51 (73)
||.+.|.|||+.++.|
T Consensus 8 RP~v~v~I~Gq~~e~L 23 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVL 23 (104)
T ss_dssp CCEEEEEETTEEEEEE
T ss_pred CCEEEEEECCEEEEEE
Confidence 7899999999988876
No 242
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=31.64 E-value=42 Score=20.18 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=16.0
Q ss_pred cCccCcHHHHHHHHHHhc
Q 035093 4 LTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~ 21 (73)
+|...||++++..|.++.
T Consensus 53 Vp~~~tv~qf~~~iRkrl 70 (118)
T 3rui_B 53 VPADLTVGQFVYVIRKRI 70 (118)
T ss_dssp EETTSBHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 678899999999998876
No 243
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=31.34 E-value=15 Score=19.90 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=19.9
Q ss_pred cc-CceEEEEcCccccccC--CccCccC-CCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSG--QLDTTLE-EKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~--g~~t~l~-dgD~V~i 66 (73)
|+ ..+++-|||+++.... .....++ .|+.|.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2pkt_A 45 LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTL 80 (91)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 44 4788999999987655 3222232 5666654
No 244
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=31.31 E-value=22 Score=20.63 Aligned_cols=31 Identities=6% Similarity=0.040 Sum_probs=22.8
Q ss_pred eEEEEcCccccccCCccCccCCCCEEEEEec
Q 035093 39 VLVLVNDCDWELSGQLDTTLEEKDVVVFIST 69 (73)
Q Consensus 39 v~ilvNg~~i~~l~g~~t~l~dgD~V~i~Pp 69 (73)
+...+.|+-.-..++....+++||.+.|-|-
T Consensus 41 i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~ 71 (164)
T 2arc_A 41 LNLTIRGQGVVKNQGREFVCRPGDILLFPPG 71 (164)
T ss_dssp EEEEEEECEEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEEEeEEEEEECCEEEEecCCeEEEEcCC
Confidence 4455667666667888889999998877663
No 245
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=30.72 E-value=41 Score=18.37 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=23.5
Q ss_pred hcCcccccccccCCcccCceEEEEcCcccc
Q 035093 20 NLIKERPEMFMKGDSVRPGVLVLVNDCDWE 49 (73)
Q Consensus 20 ~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~ 49 (73)
+..+.+.-+|-.+|+-..+..-++||..|-
T Consensus 10 nvsgvqgflfhtdgkesygyrafingveig 39 (72)
T 4f87_A 10 NVSGVQGFLFHTDGKESYGYRAFINGVEIG 39 (72)
T ss_dssp -CCSCCEEEEECCSSSCCCEEEEETTEEEE
T ss_pred ecccceEEEEecCCccccchhheecceEec
Confidence 345567778999999888899999997664
No 246
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=30.47 E-value=14 Score=22.21 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=18.6
Q ss_pred ccCccCcHHHHHHHHHHhcCcccc
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERP 26 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~ 26 (73)
++|..-.|.-.|+.+|+++|+.-+
T Consensus 42 s~~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 42 SVPSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTTEE
T ss_pred ccchHhHHHHHHHHHHhcCCchhh
Confidence 445566788899999999997543
No 247
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=30.46 E-value=4.8 Score=22.99 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=20.7
Q ss_pred cc-CceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
|+ ..+++-|||+.+.....+...++.|+.|.+
T Consensus 53 l~~GD~I~~ing~~v~~~~~~~~~l~~~~~v~l 85 (113)
T 2pzd_A 53 LRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAV 85 (113)
T ss_dssp CCTTCEEEEETTEECCSHHHHHHHHHHCSSEEE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHhCCCeEEE
Confidence 44 478899999998765544445554555443
No 248
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.38 E-value=17 Score=20.73 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=20.8
Q ss_pred cc-CceEEEEcCccccccCCccCc---cCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTT---LEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~---l~dgD~V~i 66 (73)
|+ ..+++-|||+++.....++.. .+.|+.|.+
T Consensus 60 L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 95 (117)
T 1uit_A 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95 (117)
T ss_dssp CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 44 378899999998765443332 256777665
No 249
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=29.44 E-value=16 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.5
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.|+|+.++.+.+...+ . ++-|...|||+-++ ++++|+.+.+|.++-
T Consensus 15 ~~~~g~t~~~ia~~~~~~~---~----------~~~v~~~vng~~~d----l~~~l~~d~~v~~~~ 63 (645)
T 1nyr_A 15 AFDKGTTTEDIAQSISPGL---R----------KKAVAGKFNGQLVD----LTKPLETDGSIEIVT 63 (645)
T ss_dssp BCCTTCCHHHHHHTTCHHH---H----------HHCCEEEETTEEEC----TTSCCCSCBCCCEEC
T ss_pred EecCCCCHHHHHHHhhhhc---c----------cCeEEEEECCEEEe----CCcccCCCCeEEEee
Confidence 5677889988877654322 1 12366778997654 689998888877653
No 250
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=29.24 E-value=17 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.167 Sum_probs=22.3
Q ss_pred CceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 37 PGVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
..+++-|||+.+...+.+...| +.||.|.+
T Consensus 283 GDvI~~ing~~v~~~~dl~~~l~~~~~g~~v~l 315 (348)
T 3qo6_A 283 GDIITSVNGTKVSNGSDLYRILDQCKVGDEVTV 315 (348)
T ss_dssp CCEECEETTBCCSSSHHHHHHHTTCCTTCEEEE
T ss_pred CCEEEEECCEEeCCHHHHHHHHHhCCCcCEEEE
Confidence 4899999999998766555544 45787765
No 251
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=29.01 E-value=64 Score=20.38 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=38.6
Q ss_pred ccCccCcHHHHHHHHHHhcCccccccccc-CCc-ccCceEEEEcCccccccCCccC-ccCCCCEEEEEec
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMK-GDS-VRPGVLVLVNDCDWELSGQLDT-TLEEKDVVVFIST 69 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~-~g~-lr~~v~ilvNg~~i~~l~g~~t-~l~dgD~V~i~Pp 69 (73)
++....|+.+-|-..+...|..+=.+.+- +|+ +..|++-=--|.-+--|+|... ..+.||.|.|+.-
T Consensus 38 ~Y~GSITID~dLldaAgIl~~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNGAAArl~~~GD~VII~sY 107 (143)
T 1pqh_A 38 HYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASF 107 (143)
T ss_dssp SSCCCEEEEHHHHHHHTCCTTCEEEEEETTTCCEEEEEEEEECTTCCCEECCGGGGGTCCTTCEEEEEEE
T ss_pred ccceeEEECHHHHHHcCCCCCCEEEEEECCCCceEEEEEEEccCCCceEEechHHHccCCCCCEEEEEEC
Confidence 34444577666666777777666666663 332 4445543222223333444444 4699999999863
No 252
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=28.87 E-value=26 Score=19.03 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=21.0
Q ss_pred cc-CceEEEEcCccccccCCccCc--c-CCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTT--L-EEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~--l-~dgD~V~i 66 (73)
|+ ..+++-|||+++.....++.. + +.|+.|.+
T Consensus 52 l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 87 (97)
T 2w4f_A 52 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQM 87 (97)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEE
Confidence 55 378899999999776543321 1 46777665
No 253
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=28.74 E-value=21 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=20.2
Q ss_pred EEEEcCccccccCCccCccCCCC--EEEEE--ecCCCC
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKD--VVVFI--STLHGG 73 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD--~V~i~--PpvaGG 73 (73)
.|.|||+-+.. ..+.+++|| .|.+. ++.+||
T Consensus 133 ~V~VNg~~V~~---Ps~~V~~~d~~~I~v~~~s~~~~~ 167 (181)
T 2xzm_D 133 HIKVGKNLVNV---PSFMVRTDSEKSIDFASTSPLGGG 167 (181)
T ss_dssp CCEETTEECCC---SCCBCCSTTSSCEECTTSTTTTTC
T ss_pred EEEECCEEECC---CCcCCCCCCceEEEEeCCCccCCC
Confidence 37789988753 367888887 56653 344443
No 254
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.47 E-value=5.3 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=17.3
Q ss_pred CceEEEEcCcccccc--CCccCccCCCCEEEE
Q 035093 37 PGVLVLVNDCDWELS--GQLDTTLEEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l--~g~~t~l~dgD~V~i 66 (73)
..+++-|||+++..+ ...-..++.|+.|.+
T Consensus 62 GD~I~~ing~~v~~~~~~~~~~~l~~~~~v~l 93 (104)
T 1wi2_A 62 GDQVLAVNDVDFQDIEHSKAVEILKTAREISM 93 (104)
T ss_dssp TCEEEEETTEECSSCCHHHHHHHHHHSSSEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHhCCCEEEE
Confidence 367888898888762 222223444555544
No 255
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=28.15 E-value=12 Score=26.83 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEecCCCC
Q 035093 4 LTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~PpvaGG 73 (73)
+...++++.|.++.+++..- -...+..+-+|+.|..-+-. +-.++|||+|.++..--||
T Consensus 37 Ik~~t~l~kLm~aY~~r~G~-----------~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 37 IKKTTPLRRLMEAFAKRQGK-----------EMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EecCChHHHHHHHHHHHhCC-----------CcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 34445555666655554421 12345566688877532211 2257999999999876665
No 256
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=28.11 E-value=41 Score=17.65 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=19.7
Q ss_pred eEEEEcCccccccCCccCccCCCCEEEE
Q 035093 39 VLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 39 v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
+...+.|+=.-..++....++.||.+.+
T Consensus 52 ~~~v~~G~~~~~~~~~~~~l~~Gd~~~i 79 (105)
T 1v70_A 52 VYYALEGEVVVRVGEEEALLAPGMAAFA 79 (105)
T ss_dssp EEEEEESCEEEEETTEEEEECTTCEEEE
T ss_pred EEEEEeCEEEEEECCEEEEeCCCCEEEE
Confidence 4566667655556677778999998764
No 257
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=27.79 E-value=19 Score=20.33 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=20.3
Q ss_pred ccC-ceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 35 VRP-GVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 35 lr~-~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
|++ .+++-|||+.+.....+...+ +.|+.|.+
T Consensus 55 l~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l 90 (105)
T 2i4s_A 55 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 90 (105)
T ss_dssp CCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEE
Confidence 443 788889998887655443322 46776654
No 258
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=27.63 E-value=14 Score=20.07 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=18.0
Q ss_pred CceEEEEcCcccccc--CCccCccC-CCCEEEE
Q 035093 37 PGVLVLVNDCDWELS--GQLDTTLE-EKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l--~g~~t~l~-dgD~V~i 66 (73)
..+++.|||+++... ......++ .++.+.+
T Consensus 50 GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~ 82 (95)
T 3r68_A 50 NDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 82 (95)
T ss_dssp TEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 378899999998765 33333332 3555444
No 259
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=27.59 E-value=51 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred EEcCccccccCCccCccCCCCEEEEE
Q 035093 42 LVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 42 lvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.-||+-+ ...-+|.+++||.|.+|
T Consensus 417 ~R~~~~i--iP~gdt~i~~gD~vivf 440 (461)
T 4g65_A 417 VRGEEVL--IAHDRTVIEQDDHVVMF 440 (461)
T ss_dssp EETTEEE--ECCTTCBCCTTCEEEEE
T ss_pred EECCEEE--cCCCCCEECCCCEEEEE
Confidence 3455543 34459999999998876
No 260
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.45 E-value=14 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=17.0
Q ss_pred EEEcCccccccCCccCccCC--CCEEEEEe
Q 035093 41 VLVNDCDWELSGQLDTTLEE--KDVVVFIS 68 (73)
Q Consensus 41 ilvNg~~i~~l~g~~t~l~d--gD~V~i~P 68 (73)
|.|||+-+.. ..+.+++ +|.|.+.+
T Consensus 35 V~Vng~~v~k---ps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 35 VRVGPDVVTD---PAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp EEETTBCCCC---TTCEEEHHHHTTEEESC
T ss_pred EEECCEEECC---CCCCCCCCCCcEEEEEC
Confidence 7789987743 3466666 78887654
No 261
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=27.37 E-value=11 Score=21.06 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=18.7
Q ss_pred CceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 37 PGVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
..+++-|||+.+.....+...+ +.|+.|.+
T Consensus 25 GD~Il~InG~~v~~~~~l~~~l~~~~~g~~v~l 57 (94)
T 2kl1_A 25 GDRIAAIDGQPINTSEQIVSYVREKQAGDRVRV 57 (94)
T ss_dssp TCEEEEETTBCCCCHHHHHHHHHHSCTTCCEEE
T ss_pred CCEEEEECCEECCCHHHHHHHHHhCCCCCEEEE
Confidence 4789999999987554333333 24665543
No 262
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=27.11 E-value=20 Score=19.93 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=19.0
Q ss_pred CceEEEEcCccccccC--CccCcc-CCCCEEEE
Q 035093 37 PGVLVLVNDCDWELSG--QLDTTL-EEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~--g~~t~l-~dgD~V~i 66 (73)
..+++-|||+++.... ..-..+ +.|+.|.+
T Consensus 47 GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 79 (106)
T 3ngh_A 47 GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79 (106)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence 4788999999987654 222233 45666654
No 263
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=27.05 E-value=37 Score=19.22 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=20.1
Q ss_pred ceEEEEcCccccccCCcc--CccCCCCEEEE
Q 035093 38 GVLVLVNDCDWELSGQLD--TTLEEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~--t~l~dgD~V~i 66 (73)
.+.+.+.|+=.-.+++.. ..|++||.+.|
T Consensus 55 E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~i 85 (112)
T 2opk_A 55 EWVMVVSGSAGIECEGDTAPRVMRPGDWLHV 85 (112)
T ss_dssp EEEEEEESCEEEEETTCSSCEEECTTEEEEE
T ss_pred EEEEEEeCeEEEEECCEEEEEEECCCCEEEE
Confidence 455666776555566666 78999988765
No 264
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=26.71 E-value=14 Score=19.85 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=18.5
Q ss_pred CceEEEEcCcccccc--CCccCcc---CCCCEEEE
Q 035093 37 PGVLVLVNDCDWELS--GQLDTTL---EEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l--~g~~t~l---~dgD~V~i 66 (73)
..+++-|||+++... ...-..+ +.|+.|.+
T Consensus 46 GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 80 (88)
T 3bpu_A 46 GDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTL 80 (88)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred CCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEE
Confidence 368889999998765 2222223 35776655
No 265
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=26.68 E-value=38 Score=20.41 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=15.6
Q ss_pred cccCccCcHHHHHHHHHHh
Q 035093 2 LSLTFQLIMKDLLSWVGTN 20 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~ 20 (73)
+++-+|.|++|+|...-+.
T Consensus 33 V~VrpG~tlrdaL~KaLk~ 51 (107)
T 1rrb_A 33 VNVRNGMSLHDCLMKALKV 51 (107)
T ss_dssp EECCTTCBHHHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHHHH
Confidence 6788999999999876653
No 266
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=26.63 E-value=29 Score=19.56 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=22.1
Q ss_pred ceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 38 GVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
.+...+.|+=.-..++....+++||.+.|=|
T Consensus 56 Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 56 ELFIVIQGNAIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEEEESEEEEEETTEEEEEETTCEEEECT
T ss_pred EEEEEEeCEEEEEECCEEEEECCCcEEEECC
Confidence 4556667776656677788899999876644
No 267
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=26.56 E-value=12 Score=20.99 Aligned_cols=30 Identities=7% Similarity=0.139 Sum_probs=18.4
Q ss_pred CceEEEEcCccccc--cCCccCccCC-CCEEEE
Q 035093 37 PGVLVLVNDCDWEL--SGQLDTTLEE-KDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~--l~g~~t~l~d-gD~V~i 66 (73)
-.+++-|||+.+.. ...+...++. |+.|.+
T Consensus 50 GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 82 (103)
T 1v5l_A 50 GDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82 (103)
T ss_dssp TCBEEEETTEECSSCCHHHHHHHHTTCCSEEEC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 47889999999876 3333333332 565544
No 268
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.27 E-value=30 Score=19.33 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=20.8
Q ss_pred cc-CceEEEEcCccccccCCccCc---cCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTT---LEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~---l~dgD~V~i 66 (73)
|+ -.+++-|||+.+......+.. -+.|+.|.+
T Consensus 64 L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 99 (110)
T 1x5q_A 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQM 99 (110)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEE
Confidence 55 378899999998765443321 136777665
No 269
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=26.17 E-value=23 Score=19.03 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=18.3
Q ss_pred CceEEEEcCcccccc--CCccCccCC-CCEEEE
Q 035093 37 PGVLVLVNDCDWELS--GQLDTTLEE-KDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l--~g~~t~l~d-gD~V~i 66 (73)
..+++-|||+++... ......++. |+.|.+
T Consensus 49 GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 81 (90)
T 2he4_A 49 QDRLIEVNGQNVEGLRHAEVVASIKAREDEARL 81 (90)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTSSSEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence 378889999998765 333333332 565544
No 270
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=26.05 E-value=1.3e+02 Score=21.30 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccc
Q 035093 9 IMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDW 48 (73)
Q Consensus 9 TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i 48 (73)
+...|+..+...+...+..+.+++|+.-+++.|.|.|.+.
T Consensus 283 n~~all~~l~qv~~~I~G~V~D~~g~pi~gA~V~v~g~~~ 322 (426)
T 1uwy_A 283 NKASLIEYIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKH 322 (426)
T ss_dssp THHHHHHHHGGGGCSEEEEEECTTSCBCCSCEEEETTCCC
T ss_pred hHHHhhhhhccccceeEEEEECCCCCccCceEEEEEeccc
Confidence 4566888888888888889999999999999999998763
No 271
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=25.59 E-value=49 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=16.0
Q ss_pred cccCccCcHHHHHHHHHHh
Q 035093 2 LSLTFQLIMKDLLSWVGTN 20 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~ 20 (73)
+++-+|.|++++|....+.
T Consensus 28 V~VrpG~tlrdaL~KaLk~ 46 (96)
T 3ny5_A 28 VPARCGVTVRDSLKKALMM 46 (96)
T ss_dssp EECCTTCBHHHHHHHHHHT
T ss_pred EEecCCcCHHHHHHHHHHH
Confidence 6788999999999887763
No 272
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=25.55 E-value=32 Score=18.91 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred cc-CceEEEEcCccccccC--CccCcc--CCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSG--QLDTTL--EEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~--g~~t~l--~dgD~V~i 66 (73)
|+ ..+++-|||+++.... ..-..+ +.|+.|.+
T Consensus 63 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l 99 (104)
T 3sfj_A 63 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 99 (104)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 54 3788999999986554 333344 35666654
No 273
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=25.34 E-value=29 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=20.8
Q ss_pred ceEEEEcCccccccC-CccCccCCCCEEEEEe
Q 035093 38 GVLVLVNDCDWELSG-QLDTTLEEKDVVVFIS 68 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~-g~~t~l~dgD~V~i~P 68 (73)
.+...+.|+=.-..+ |....|++||.+.|=|
T Consensus 51 E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 51 ETCYILEGKVEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEEEEEEEEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEEEeCEEEEEECCCCEEEECCCCEEEECC
Confidence 344556666544455 7778999999887644
No 274
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.20 E-value=67 Score=19.36 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=17.6
Q ss_pred cccCccCcHHHHHHHHHHhcC
Q 035093 2 LSLTFQLIMKDLLSWVGTNLI 22 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~ 22 (73)
|.++.++|.+|+|+..-.++.
T Consensus 26 ~~~~~~STAkdvl~qaL~ka~ 46 (110)
T 2bye_A 26 FTINGGTKAKQLLQQILTNEQ 46 (110)
T ss_dssp EECCTTCCHHHHHHHHHCCSS
T ss_pred EEecCCCcHHHHHHHHHHHhc
Confidence 457889999999999987773
No 275
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=24.92 E-value=12 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=17.5
Q ss_pred cccccCCccCccCCCCEEEEEecCCCC
Q 035093 47 DWELSGQLDTTLEEKDVVVFISTLHGG 73 (73)
Q Consensus 47 ~i~~l~g~~t~l~dgD~V~i~PpvaGG 73 (73)
..+.-+.++|+|-.|| +||+.+||
T Consensus 73 E~dsdGeieTkL~KGd---V~~T~gGG 96 (120)
T 3vhx_B 73 ELASDGEIETKLIKGD---IYKTRGGG 96 (120)
T ss_dssp EECTTSCEEEEEEEEE---EEECTTSC
T ss_pred eecCCCcEEEEEEEee---EEeecCCc
Confidence 3444577788888887 67888887
No 276
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=24.89 E-value=32 Score=20.95 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=19.9
Q ss_pred EEEEcCccccccCCccCccCCCCEEEEEecC
Q 035093 40 LVLVNDCDWELSGQLDTTLEEKDVVVFISTL 70 (73)
Q Consensus 40 ~ilvNg~~i~~l~g~~t~l~dgD~V~i~Ppv 70 (73)
.|.+|-.|...++ |++||.|.+..+-
T Consensus 54 ~v~inp~dA~~lG-----I~dGd~V~V~s~~ 79 (146)
T 2ki8_A 54 YAEINEEDWNALG-----LQEGDRVKVKTEF 79 (146)
T ss_dssp EEEECHHHHHHHT-----CCTTCEEEEECSS
T ss_pred EEEECHHHHHHcC-----CCCCCEEEEEeCC
Confidence 4777888877665 8899999987653
No 277
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=24.85 E-value=39 Score=18.18 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=20.4
Q ss_pred ceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.+...+.|+=.-..++....|+.||.+.|=
T Consensus 46 e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~ 75 (113)
T 2gu9_A 46 QWLFVVDGAGEAIVDGHTQALQAGSLIAIE 75 (113)
T ss_dssp EEEEEEECCEEEEETTEEEEECTTEEEEEC
T ss_pred EEEEEEeCEEEEEECCEEEEeCCCCEEEEC
Confidence 355666776555567777789999877653
No 278
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=24.64 E-value=13 Score=20.38 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=19.0
Q ss_pred cc-CceEEEEcCcccccc--CCccCccC-CCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELS--GQLDTTLE-EKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l--~g~~t~l~-dgD~V~i 66 (73)
|+ ..+++-|||+++..+ ..+...++ .|+.|.+
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 83 (96)
T 2v90_A 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSL 83 (96)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44 478899999998763 22222232 2666654
No 279
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=24.55 E-value=33 Score=25.84 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=34.3
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+++.|+|+.++.+.+.... .+ .-+...|||+-|+ ++++|+.+..|.++.
T Consensus 13 ~~~~~~t~~~~a~~i~~~~---~~----------~~~~~~vng~~~d----l~~~l~~d~~~~~~~ 61 (642)
T 1qf6_A 13 HYDHAVSPMDVALDIGPGL---AK----------ACIAGRVNGELVD----ACDLIENDAQLSIIT 61 (642)
T ss_dssp ECSSCBCHHHHHHHHCHHH---HH----------HCSEEEETTEEEE----TTSCBCSCEECCEEC
T ss_pred EecCCCCHHHHHHHhchhh---hh----------heEEEEECCEEec----cccccCCCceEEEee
Confidence 5667889999988775432 21 2355678998765 688998888777653
No 280
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=24.39 E-value=74 Score=18.61 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=15.7
Q ss_pred ccCccCcHHHHHHHHHHhc
Q 035093 3 SLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~ 21 (73)
-+|...||++++..|..+.
T Consensus 49 lVp~~~tv~~~~~~iRk~l 67 (110)
T 2r2q_A 49 LVPSDLTVGQFYFLIRKRI 67 (110)
T ss_dssp EEETTCBHHHHHHHHHHHT
T ss_pred EeCCCCcHHHHHHHHHHHh
Confidence 3677889999999998875
No 281
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=24.35 E-value=89 Score=17.93 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHhcCccc-ccccccC----Cc--ccCceEEEEcCccccccCCccC
Q 035093 8 LIMKDLLSWVGTNLIKER-PEMFMKG----DS--VRPGVLVLVNDCDWELSGQLDT 56 (73)
Q Consensus 8 ~TV~~ll~~L~~~~~~~~-~~l~~~~----g~--lr~~v~ilvNg~~i~~l~g~~t 56 (73)
..+...++.|+++||+.+ -++-.++ -. --|-++++.||+-+..+.|...
T Consensus 39 ~~~~p~l~~la~~~~~v~f~kvd~d~~~~~~~v~~~PT~~~fk~G~~v~~~~G~~~ 94 (118)
T 3evi_A 39 LLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIE 94 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEGGGTSTTCCGGGCSEEEEEETTEEEEEEESTTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHhHHHCCCCCCCEEEEEECCEEEEEEeChhh
Confidence 457788999999998753 1111111 12 2378999999999888877653
No 282
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=24.32 E-value=21 Score=21.53 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.5
Q ss_pred cCceEEEEcCcccccc
Q 035093 36 RPGVLVLVNDCDWELS 51 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l 51 (73)
||.+ |.|||+.++.|
T Consensus 14 rP~v-ikI~Gq~~eaL 28 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFL 28 (116)
T ss_dssp CEEE-EEETTEEEEEE
T ss_pred CCEE-EEECCEEEEEE
Confidence 7899 99999999877
No 283
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=24.25 E-value=63 Score=19.41 Aligned_cols=20 Identities=15% Similarity=-0.076 Sum_probs=16.0
Q ss_pred cccCccCcHHHHHHHHHHhc
Q 035093 2 LSLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~ 21 (73)
+++.+..||.+|=+.+.++.
T Consensus 16 lev~~sdTV~~lK~kI~~~e 35 (118)
T 2fnj_B 16 TDAKESSTVFELKRIVEGIL 35 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHH
T ss_pred EEeCCcChHHHHHHHHHHHh
Confidence 56778899999888887765
No 284
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=23.96 E-value=35 Score=19.94 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.7
Q ss_pred CccCCCCEEEEEec
Q 035093 56 TTLEEKDVVVFIST 69 (73)
Q Consensus 56 t~l~dgD~V~i~Pp 69 (73)
-.|++.|+|+||.-
T Consensus 32 reLkddd~vAIlnI 45 (88)
T 1iqo_A 32 KKLSDDDEIAIISI 45 (88)
T ss_dssp CCCSSCCCEEEEEC
T ss_pred ccCCCCCcEEEEEe
Confidence 36899999999864
No 285
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.94 E-value=70 Score=19.00 Aligned_cols=19 Identities=0% Similarity=0.128 Sum_probs=15.8
Q ss_pred ccCccCcHHHHHHHHHHhc
Q 035093 3 SLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~ 21 (73)
-+|...||++++..|..+.
T Consensus 50 lVp~~~tv~~f~~~iRk~l 68 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRI 68 (117)
T ss_dssp EEETTSBHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHhhHHhh
Confidence 3677889999999998875
No 286
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=23.92 E-value=40 Score=19.57 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=20.2
Q ss_pred ceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+.+.+.|+=.-.++|....|+.||.|.|
T Consensus 61 E~~~Vl~G~~~~~~~g~~~~l~~GD~v~i 89 (119)
T 3lwc_A 61 DVMIVLEGRLSVSTDGETVTAGPGEIVYM 89 (119)
T ss_dssp EEEEEEEEEEEEEETTEEEEECTTCEEEE
T ss_pred EEEEEEeCEEEEEECCEEEEECCCCEEEE
Confidence 44555566655555777788999998865
No 287
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.92 E-value=56 Score=18.07 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=21.5
Q ss_pred ceEEEEcCccccccCCccC-ccCCCCEEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDT-TLEEKDVVVFI 67 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t-~l~dgD~V~i~ 67 (73)
.+...+.|+=.-..++... .|+.||.+.|=
T Consensus 49 e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip 79 (117)
T 2b8m_A 49 VHLIIIKGEMTLTLEDQEPHNYKEGNIVYVP 79 (117)
T ss_dssp EEEEEEESEEEEEETTSCCEEEETTCEEEEC
T ss_pred EEEEEEeCEEEEEECCEEEEEeCCCCEEEEC
Confidence 3556677776556677778 89999987653
No 288
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=23.91 E-value=36 Score=20.09 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=17.1
Q ss_pred ccCccCcHHHHHHHHHHhcC
Q 035093 3 SLTFQLIMKDLLSWVGTNLI 22 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~ 22 (73)
-+|...+..+|++.+.++..
T Consensus 28 ~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 28 LVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp EECTTCCHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHc
Confidence 46788999999999998874
No 289
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=23.83 E-value=17 Score=24.77 Aligned_cols=32 Identities=6% Similarity=0.229 Sum_probs=0.0
Q ss_pred ccC-ceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 35 VRP-GVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 35 lr~-~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
|++ .+++-|||+.+.....+...++.|+.|.+
T Consensus 272 l~~GD~I~~ing~~v~~~~~~~~~l~~~~~v~l 304 (332)
T 3num_A 272 LKENDVIISINGQSVVSANDVSDVIKRESTLNM 304 (332)
T ss_dssp ---------------------------------
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHhCCCeEEE
Confidence 443 68899999999877777777777776554
No 290
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=23.43 E-value=1.5e+02 Score=18.92 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=33.4
Q ss_pred ccCccCcHHHHHHHHHHhcCcccccccccCCcccCceEEEEcCccccccCCccC-ccCCCCEEEEEecCCC
Q 035093 3 SLTFQLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT-TLEEKDVVVFISTLHG 72 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t-~l~dgD~V~i~PpvaG 72 (73)
.+....+++-|.++.|++..--. ..+..+.+|+.+..-+..+. ..+|+|.|..+-.--|
T Consensus 36 ~i~~~~~l~kl~~~y~~~~g~~~-----------~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 36 KIKKTTPLRRLMEAFAKRQGKEM-----------DSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEETTSCTHHHHHHHHHHHTCCG-----------GGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEeeCCHHHHHHHHHHHhhCCCh-----------heEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 44556778888888888763211 13445556666544322222 4577777776655444
No 291
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=23.35 E-value=70 Score=18.58 Aligned_cols=56 Identities=9% Similarity=0.114 Sum_probs=34.9
Q ss_pred cccCccCcHHHHHHHHHHhc--CcccccccccCCcccCceEEEEcCccccccCCc-cCccCCCCEEEEEec
Q 035093 2 LSLTFQLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL-DTTLEEKDVVVFIST 69 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~--~~~~~~l~~~~g~lr~~v~ilvNg~~i~~l~g~-~t~l~dgD~V~i~Pp 69 (73)
+++|+.+-...+|+.-++.+ |.....+.+.|| .-|..-+-. +--||.|.++.++|-
T Consensus 28 lsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dG------------iGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 28 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDG------------IGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTS------------CCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred EecCccCchHHHHHHHHHHcCCCccceEEEecCC------------cccChhhccchhhhhcCceeEeccc
Confidence 57899999999999999988 332334444443 112111111 124678888888874
No 292
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.20 E-value=13 Score=20.63 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=19.5
Q ss_pred cc-CceEEEEcCccccccC--CccCccCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSG--QLDTTLEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~--g~~t~l~dgD~V~i 66 (73)
|+ ..+++-|||+.+.... ..-..++.|+.|.+
T Consensus 54 L~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l 88 (100)
T 2eeh_A 54 LCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHM 88 (100)
T ss_dssp CCSSCEEEEETTEECSSCCHHHHHHHHHSCSSEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEE
Confidence 44 3788899999987653 11123455665554
No 293
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=23.13 E-value=43 Score=18.46 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=20.5
Q ss_pred eEEEEcCccccccCCccCccCCCCEEEEEe
Q 035093 39 VLVLVNDCDWELSGQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 39 v~ilvNg~~i~~l~g~~t~l~dgD~V~i~P 68 (73)
+...+.|+=.-..++....|++||.+.|=|
T Consensus 61 ~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 61 LYLILQGEAVITFDDQKIDLVPEDVLMVPA 90 (114)
T ss_dssp EEEEEEEEEEEEETTEEEEECTTCEEEECT
T ss_pred EEEEEeCEEEEEECCEEEEecCCCEEEECC
Confidence 445566665555677777899999876644
No 294
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=23.00 E-value=16 Score=19.85 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=19.0
Q ss_pred CceEEEEcCccccccCCccCc---cCCCCEEEE
Q 035093 37 PGVLVLVNDCDWELSGQLDTT---LEEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~g~~t~---l~dgD~V~i 66 (73)
..+++-|||+.+.....+... .+.|+.|.+
T Consensus 40 GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l 72 (87)
T 2i6v_A 40 GDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 72 (87)
T ss_dssp TCEEEEETTEETTCHHHHHHHHHTGGGCSEEEE
T ss_pred CCEEEEECCEECCCHHHHHHHHHhcCCCCEEEE
Confidence 478999999988755433322 245666554
No 295
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=22.61 E-value=39 Score=18.97 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=19.9
Q ss_pred eEEEEcCcccccc-CCccCccCCCCEEEE
Q 035093 39 VLVLVNDCDWELS-GQLDTTLEEKDVVVF 66 (73)
Q Consensus 39 v~ilvNg~~i~~l-~g~~t~l~dgD~V~i 66 (73)
+...+.|+=.-.. +|....|+.||.+.|
T Consensus 63 ~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i 91 (125)
T 3h8u_A 63 TWTVISGEAEYHQGNGIVTHLKAGDIAIA 91 (125)
T ss_dssp EEEEEECEEEEECSTTCEEEEETTEEEEE
T ss_pred EEEEEEeEEEEEECCCeEEEeCCCCEEEE
Confidence 4446777766566 677778999998754
No 296
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.60 E-value=34 Score=18.18 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=20.4
Q ss_pred ceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
.+.+.+.|+=.-..++....+++||.+.|
T Consensus 52 e~~~v~~G~~~~~~~~~~~~l~~Gd~~~i 80 (102)
T 3d82_A 52 EVFIVMEGTLQIAFRDQNITLQAGEMYVI 80 (102)
T ss_dssp EEEEEEESEEEEECSSCEEEEETTEEEEE
T ss_pred EEEEEEeCEEEEEECCEEEEEcCCCEEEE
Confidence 45666777665566777788999986644
No 297
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=22.58 E-value=40 Score=18.64 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=20.9
Q ss_pred cccC-ceEEEEcCccccccCCccCc---cCCCCEEEE
Q 035093 34 SVRP-GVLVLVNDCDWELSGQLDTT---LEEKDVVVF 66 (73)
Q Consensus 34 ~lr~-~v~ilvNg~~i~~l~g~~t~---l~dgD~V~i 66 (73)
.|++ .+++-|||+++....-.... .+.|+.|.+
T Consensus 55 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l 91 (107)
T 2h2b_A 55 QLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKI 91 (107)
T ss_dssp TBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEE
Confidence 4553 68889999988765433332 256776654
No 298
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=22.52 E-value=28 Score=15.78 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=12.7
Q ss_pred CcHHHHHHHHHHhcCcc
Q 035093 8 LIMKDLLSWVGTNLIKE 24 (73)
Q Consensus 8 ~TV~~ll~~L~~~~~~~ 24 (73)
+|+.|+++.+.+...++
T Consensus 7 sTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 7 STIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58889998888765443
No 299
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=22.49 E-value=53 Score=24.41 Aligned_cols=28 Identities=0% Similarity=-0.084 Sum_probs=21.6
Q ss_pred cccCccCcHHHHHHHHHHhcCccccccc
Q 035093 2 LSLTFQLIMKDLLSWVGTNLIKERPEMF 29 (73)
Q Consensus 2 ~~l~~~~TV~~ll~~L~~~~~~~~~~l~ 29 (73)
|.+.+++||++++..++++..-.....|
T Consensus 26 v~~~~~~~~~~i~~~v~~~l~i~~~~~f 53 (656)
T 2j0j_A 26 IRHGDATDVRGIIQKIVDCHKVKNVACY 53 (656)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCSCGGGE
T ss_pred EEeCCCCcHHHHHHHHHHhcCcceeeeE
Confidence 5567899999999999998754344555
No 300
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=22.48 E-value=33 Score=20.76 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=14.2
Q ss_pred cCceEEEEcCcccccc
Q 035093 36 RPGVLVLVNDCDWELS 51 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l 51 (73)
||-+.|.|||+.++.|
T Consensus 9 RP~vti~I~Gq~~eaL 24 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGL 24 (114)
T ss_dssp CCEEEEEETTEEEEEE
T ss_pred CCeEEEEECCEEEEEE
Confidence 7889999999998877
No 301
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=22.19 E-value=41 Score=21.20 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=9.0
Q ss_pred ccCCCCEEEEE
Q 035093 57 TLEEKDVVVFI 67 (73)
Q Consensus 57 ~l~dgD~V~i~ 67 (73)
.|+|||+|.|-
T Consensus 121 ~LkDGD~V~I~ 131 (146)
T 2oyn_A 121 NLKDGDVIKIL 131 (146)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 58999988874
No 302
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=22.04 E-value=59 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=14.7
Q ss_pred CccCCCCEEEEEecCCC
Q 035093 56 TTLEEKDVVVFISTLHG 72 (73)
Q Consensus 56 t~l~dgD~V~i~PpvaG 72 (73)
..|++||.|+|..+..|
T Consensus 170 ~~l~~GDiI~i~t~~~G 186 (249)
T 2p1g_A 170 PWIKNGDIIALTTNTPG 186 (249)
T ss_dssp TTSCTTCEEEEEECSTT
T ss_pred hcCCCCCEEEEEeCCCC
Confidence 56999999999998765
No 303
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.93 E-value=1.1e+02 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.4
Q ss_pred CCccCccCCCCEEEEEe
Q 035093 52 GQLDTTLEEKDVVVFIS 68 (73)
Q Consensus 52 ~g~~t~l~dgD~V~i~P 68 (73)
...+|.|+.||.+.++-
T Consensus 200 p~~~~~l~~GD~l~v~g 216 (234)
T 2aef_A 200 PPRDYSFRAGDIILGIG 216 (234)
T ss_dssp CCTTCBCCTTCEEEEEE
T ss_pred CCCCCEECCCCEEEEEE
Confidence 56689999999998874
No 304
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=21.93 E-value=53 Score=19.43 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=12.6
Q ss_pred ccCcHHHHHHHHHHh
Q 035093 6 FQLIMKDLLSWVGTN 20 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~ 20 (73)
.+.||++|++.|.+.
T Consensus 73 ~n~TV~~L~~lL~k~ 87 (108)
T 1d2z_A 73 YNHTVQTLFALFKKL 87 (108)
T ss_dssp HCCBHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHc
Confidence 478999999999863
No 305
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.85 E-value=15 Score=21.51 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=11.7
Q ss_pred CceEEEEcCcccccc
Q 035093 37 PGVLVLVNDCDWELS 51 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l 51 (73)
..+++-|||+.+...
T Consensus 67 GD~Il~Vng~~v~~~ 81 (118)
T 2yub_A 67 GDRILEINGTPVRTL 81 (118)
T ss_dssp TCCEEEESSSBTTTS
T ss_pred CCEEEEECCEECCCc
Confidence 368888999888765
No 306
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=21.56 E-value=18 Score=21.52 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccc-CceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 34 SVR-PGVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 34 ~lr-~~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
.|+ ..+++-|||+.+.....+...+ +.|+.|.+
T Consensus 73 GL~~GD~I~~inG~~v~~~~~l~~~l~~~~~g~~v~l 109 (134)
T 2l97_A 73 HLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKI 109 (134)
T ss_dssp TSCSSCEEEEETTEECCCHHHHHHHHHHSSTTCEEEE
T ss_pred CCCCCCEEEEECCEEcCCHHHHHHHHHhCCCCCEEEE
Confidence 344 4789999999987654443322 35776554
No 307
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.27 E-value=1.1e+02 Score=20.14 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=21.9
Q ss_pred CCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 32 GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 32 ~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.|++-+.+.|.+.+.-++ .+++||.|.|.
T Consensus 206 ~G~~Prsi~v~l~~dLvd-------~~~PGDrV~vt 234 (268)
T 2vl6_A 206 SGQLPRQLEIILEDDLVD-------SARPGDRVKVT 234 (268)
T ss_dssp TTSCCCEEEEEEEGGGTT-------SSCTTCEEEEE
T ss_pred CCCCCcEEEEEEccCccC-------cccCCCEEEEE
Confidence 578878888888775553 47999999853
No 308
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=21.26 E-value=62 Score=21.72 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=14.7
Q ss_pred CccCCCCEEEEEecCCC
Q 035093 56 TTLEEKDVVVFISTLHG 72 (73)
Q Consensus 56 t~l~dgD~V~i~PpvaG 72 (73)
-.|++||-|+|..+..|
T Consensus 169 ~~l~~GDiIai~t~~~G 185 (240)
T 4h4j_A 169 PWIKDGDIIAITTNTPG 185 (240)
T ss_dssp TTSCTTCEEEEEECSTT
T ss_pred hhCCCCcEEEEEecCCC
Confidence 46999999999998766
No 309
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Probab=21.25 E-value=1.7e+02 Score=20.45 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred cCccCcHHHHHHHHHHhcCccccc-ccccCCcccCceEEEEcCccccccCC--c-cCccCCCCEEEE
Q 035093 4 LTFQLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQ--L-DTTLEEKDVVVF 66 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~~~~~~~-l~~~~g~lr~~v~ilvNg~~i~~l~g--~-~t~l~dgD~V~i 66 (73)
+.+|.|..|+-..+....-+.... -+ .+---| .++-+|..-.-.... . +.+|++||.|.|
T Consensus 68 ikpG~te~El~~~ie~~~~~~g~~~~~--~~~aFp-t~~s~N~~~~H~~P~~~d~~~~L~~GDlV~I 131 (360)
T 2nw5_A 68 VRPGITLLEIVRSIEDSTRTLLKGERN--NGIGFP-AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKI 131 (360)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHTTTSGG--GGEEEE-EEEEETTEEECCCCCTTCCCCBCCTTCEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcc--CccccC-ceeeccccccCCCCCcccCCcCcCCCCEEEE
Confidence 456888888877665432111000 00 000001 125667653322222 2 679999998876
No 310
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=21.10 E-value=21 Score=19.95 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=20.1
Q ss_pred CceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 37 PGVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
..+++-|||+.+...+.+...+ +.|+.|.+
T Consensus 27 GD~I~~Ing~~v~~~~dl~~~l~~~~~g~~v~l 59 (100)
T 3i18_A 27 GDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKI 59 (100)
T ss_dssp TCEEEEETTBCCSSHHHHHHHHHTSCTTCEEEE
T ss_pred CCEEEEECCEECCCHHHHHHHHHhCCCCCEEEE
Confidence 3799999999987655444433 35676654
No 311
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.88 E-value=1.1e+02 Score=20.30 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCcccCceEEEEcCccccccCCccCccCCCCEEEEE
Q 035093 32 GDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 67 (73)
Q Consensus 32 ~g~lr~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i~ 67 (73)
.|++-+.+.|.+.+.-++ .+++||.|.|.
T Consensus 193 ~G~~Prsi~V~l~~dLvd-------~~~PGDrV~vt 221 (279)
T 1ltl_A 193 GGEQPRQITVVLEDDLVD-------TLTPGDIVRVT 221 (279)
T ss_dssp SSCCCCEEEEEEEGGGTT-------CCCTTCEEEEE
T ss_pred CCCCCeEEEEEEcccccC-------ccCCCCEEEEE
Confidence 578878888888775553 47899999864
No 312
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=20.82 E-value=56 Score=18.13 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=13.6
Q ss_pred ccCcHHHHHHHHHHhc
Q 035093 6 FQLIMKDLLSWVGTNL 21 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~~ 21 (73)
.|.|+.|+++.+.+.|
T Consensus 56 ~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 56 KGTSITDVVNQLVDNW 71 (76)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4789999999988877
No 313
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=20.77 E-value=59 Score=19.26 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=12.7
Q ss_pred ccCcHHHHHHHHHHh
Q 035093 6 FQLIMKDLLSWVGTN 20 (73)
Q Consensus 6 ~~~TV~~ll~~L~~~ 20 (73)
.+.||++|++.|.+.
T Consensus 77 ~~~TV~~Ll~lL~~~ 91 (113)
T 2a9i_A 77 TNCTVGDLVDLLVQI 91 (113)
T ss_dssp GTCBHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHc
Confidence 478999999999863
No 314
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=20.73 E-value=18 Score=19.76 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=12.3
Q ss_pred ccC-ceEEEEcCccccc
Q 035093 35 VRP-GVLVLVNDCDWEL 50 (73)
Q Consensus 35 lr~-~v~ilvNg~~i~~ 50 (73)
|++ .+++-|||+++..
T Consensus 51 l~~GD~I~~ing~~v~~ 67 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLG 67 (97)
T ss_dssp CCTTCEEEEETTEECSS
T ss_pred CCCCCEEEEECCEECCC
Confidence 553 6888999998876
No 315
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=20.69 E-value=1.8e+02 Score=18.79 Aligned_cols=62 Identities=19% Similarity=0.050 Sum_probs=32.5
Q ss_pred cCccCcHHHHHHHHHHhcCccc-ccccccCCcccCceEEEEcCccccccCCccCc-cCCCCEEEE
Q 035093 4 LTFQLIMKDLLSWVGTNLIKER-PEMFMKGDSVRPGVLVLVNDCDWELSGQLDTT-LEEKDVVVF 66 (73)
Q Consensus 4 l~~~~TV~~ll~~L~~~~~~~~-~~l~~~~g~lr~~v~ilvNg~~i~~l~g~~t~-l~dgD~V~i 66 (73)
+.+|.|-.|+-..+....-+.. ...|..-....+-+..-.|..-.-... -+.+ |++||.|.|
T Consensus 43 i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~f~~~v~~g~n~~~~H~~p-~~~~~l~~Gd~v~i 106 (262)
T 1o0x_A 43 IVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNEEVVHGLP-LKEKVFKEGDIVSV 106 (262)
T ss_dssp CSTTCBHHHHHHHHHHHHHHHTCEESSTTGGGCCCSEEEEETTBCSCCCC-CTTCBCCTTCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCccccccccCCCcceEecccccccCCCC-CCCcccCCCCEEEE
Confidence 4567787777666655431111 011111012233455666776543333 3667 999999876
No 316
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=20.56 E-value=20 Score=19.96 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=20.0
Q ss_pred Cccc-CceEEEEcCcccccc--CCccCccC---CCCEEEE
Q 035093 33 DSVR-PGVLVLVNDCDWELS--GQLDTTLE---EKDVVVF 66 (73)
Q Consensus 33 g~lr-~~v~ilvNg~~i~~l--~g~~t~l~---dgD~V~i 66 (73)
+.|+ ..+++-|||+++... +.....|+ .|+.|.+
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l 93 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence 4455 478889999998332 22222332 5676655
No 317
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.43 E-value=17 Score=20.16 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=18.2
Q ss_pred CceEEEEcCccccccC--CccCccC-CCCEEEE
Q 035093 37 PGVLVLVNDCDWELSG--QLDTTLE-EKDVVVF 66 (73)
Q Consensus 37 ~~v~ilvNg~~i~~l~--g~~t~l~-dgD~V~i 66 (73)
..+++-|||+++.... .....++ .|+.|.+
T Consensus 51 GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 83 (102)
T 2d90_A 51 NDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL 83 (102)
T ss_dssp TCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4788999999987642 2222222 3666655
No 318
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=20.31 E-value=27 Score=20.64 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=18.8
Q ss_pred ceEEEEcCccccccCCccCcc---CCCCEEEE
Q 035093 38 GVLVLVNDCDWELSGQLDTTL---EEKDVVVF 66 (73)
Q Consensus 38 ~v~ilvNg~~i~~l~g~~t~l---~dgD~V~i 66 (73)
.+++-|||+.+.....+...+ +.|+.|.+
T Consensus 46 D~Il~InG~~v~~~~dl~~~l~~~~~g~~v~l 77 (125)
T 2hga_A 46 LVIESINGMPTSNLTTYSAALKTISVGEVINI 77 (125)
T ss_dssp CEEEEETTEECSSHHHHHHHHTTCCTTCEEEE
T ss_pred CEEEEECCEEcCCHHHHHHHHHhcCCCCEEEE
Confidence 788899999887654444333 35676554
No 319
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=20.31 E-value=20 Score=24.33 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=23.0
Q ss_pred cc-CceEEEEcCccccccCCccCccCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELSGQLDTTLEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l~g~~t~l~dgD~V~i 66 (73)
|+ ..+++-|||+.|.....+...++.++.|.+
T Consensus 274 l~~GDvI~~ing~~v~~~~~l~~~l~~~~~v~l 306 (325)
T 1lcy_A 274 LRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAV 306 (325)
T ss_dssp CCTTCEEEEETTEECCSHHHHHHHHTTCSSEEE
T ss_pred CCCCCEEEEECCEEcCCHHHHHHHHhCCCeEEE
Confidence 44 368899999998876666666666766554
No 320
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=20.30 E-value=24 Score=21.99 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=18.5
Q ss_pred cc-CceEEEEcCcccccc--CCccCccCCCCEEEE
Q 035093 35 VR-PGVLVLVNDCDWELS--GQLDTTLEEKDVVVF 66 (73)
Q Consensus 35 lr-~~v~ilvNg~~i~~l--~g~~t~l~dgD~V~i 66 (73)
|+ ..+++-|||+++..+ ...-..++.|+.|.+
T Consensus 128 L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~v~l 162 (192)
T 3k1r_A 128 LQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSI 162 (192)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHTSSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHcCCCeEEE
Confidence 44 357788888887652 222234555666654
No 321
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=20.19 E-value=70 Score=15.66 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=15.5
Q ss_pred ccCccCcHHHHHHHHHHhc
Q 035093 3 SLTFQLIMKDLLSWVGTNL 21 (73)
Q Consensus 3 ~l~~~~TV~~ll~~L~~~~ 21 (73)
.+++..|+.++++.+.+..
T Consensus 4 ~v~~~~~~~~a~~~m~~~~ 22 (70)
T 3fio_A 4 VVQPKDTVDRVAKILSRNK 22 (70)
T ss_dssp EECTTCBHHHHHHHHHHTT
T ss_pred EECCCCcHHHHHHHHHHcC
Confidence 4678899999999998744
No 322
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=20.02 E-value=63 Score=21.31 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=19.1
Q ss_pred cCceEEEEcCcccccc---CCccCccCC
Q 035093 36 RPGVLVLVNDCDWELS---GQLDTTLEE 60 (73)
Q Consensus 36 r~~v~ilvNg~~i~~l---~g~~t~l~d 60 (73)
||-+.|.|||+.+++| +-.+|.|++
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEECS
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEec
Confidence 7889999999999888 444556654
Done!