Query 035100
Match_columns 73
No_of_seqs 113 out of 689
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jnb_A NHP2-like protein 1; sp 99.9 1.3E-22 4.6E-27 131.5 3.6 73 1-73 72-144 (144)
2 2aif_A Ribosomal protein L7A; 99.8 1.2E-21 4E-26 125.4 5.6 73 1-73 63-135 (135)
3 3o85_A Ribosomal protein L7AE; 99.8 3.7E-21 1.3E-25 121.4 6.8 70 1-72 53-122 (122)
4 2ale_A SNU13, NHP2/L7AE family 99.8 2.4E-21 8.1E-26 124.1 5.7 73 1-73 54-126 (134)
5 2lbw_A H/ACA ribonucleoprotein 99.8 2.7E-20 9.3E-25 117.0 8.1 71 1-71 42-121 (121)
6 1xbi_A 50S ribosomal protein L 99.8 5.8E-19 2E-23 110.8 6.7 66 1-66 51-117 (120)
7 1vq8_F 50S ribosomal protein L 99.8 6.3E-19 2.2E-23 110.3 6.0 68 1-71 51-119 (120)
8 2fc3_A 50S ribosomal protein L 99.8 1.4E-18 4.7E-23 109.4 7.2 67 1-70 50-117 (124)
9 1rlg_A 50S ribosomal protein L 99.8 1.1E-18 3.8E-23 109.1 6.1 68 1-71 49-117 (119)
10 3jyw_G 60S ribosomal protein L 99.7 7.2E-18 2.5E-22 105.6 4.1 52 1-53 47-98 (113)
11 3v7e_A Ribosome-associated pro 99.7 2E-17 6.7E-22 97.9 4.8 49 1-50 33-81 (82)
12 3on1_A BH2414 protein; structu 99.7 1.3E-17 4.5E-22 101.5 4.1 60 1-62 40-100 (101)
13 4a17_F RPL7A, 60S ribosomal pr 99.7 1.1E-16 3.9E-21 111.5 8.0 66 1-68 146-211 (255)
14 3v7q_A Probable ribosomal prot 99.7 3.7E-17 1.3E-21 99.7 4.3 59 1-61 41-100 (101)
15 3iz5_H 60S ribosomal protein L 99.6 1.7E-16 5.8E-21 110.7 6.3 64 1-65 149-215 (258)
16 3iz5_f 60S ribosomal protein L 99.6 1.6E-16 5.4E-21 99.1 5.1 58 1-59 48-107 (112)
17 3cpq_A 50S ribosomal protein L 99.6 3.9E-16 1.3E-20 96.4 6.5 60 1-62 43-104 (110)
18 3u5e_c L32, RP73, YL38, 60S ri 99.6 9.8E-17 3.4E-21 98.5 2.5 56 1-57 44-101 (105)
19 3j21_Z 50S ribosomal protein L 99.6 4.1E-16 1.4E-20 94.6 5.1 56 1-57 37-94 (99)
20 4a18_G RPL30; ribosome, eukary 99.6 2.5E-16 8.7E-21 96.4 4.2 55 1-56 44-100 (104)
21 1w41_A 50S ribosomal protein L 99.6 1.6E-16 5.5E-21 96.6 3.1 59 1-61 38-98 (101)
22 2xzm_U Ribosomal protein L7AE 99.6 1.2E-15 4.1E-20 96.7 5.4 53 1-53 46-109 (126)
23 3izc_H 60S ribosomal protein R 99.6 1.5E-15 5.2E-20 106.0 6.1 65 1-66 153-220 (256)
24 3u5c_M 40S ribosomal protein S 99.6 1.5E-15 5.1E-20 98.4 5.7 65 1-65 62-140 (143)
25 2zkr_f 60S ribosomal protein L 99.6 2.1E-15 7.2E-20 105.7 4.2 63 1-64 157-222 (266)
26 3vi6_A 60S ribosomal protein L 99.4 4.8E-14 1.6E-18 89.1 3.8 65 1-66 49-115 (125)
27 2kg4_A Growth arrest and DNA-d 99.4 2.8E-13 9.7E-18 89.5 6.5 55 1-55 59-134 (165)
28 3cg6_A Growth arrest and DNA-d 98.5 2.4E-07 8.2E-12 60.1 6.0 52 1-53 49-113 (146)
29 3ffm_A Growth arrest and DNA-d 98.2 4.2E-06 1.4E-10 55.2 6.0 44 10-53 85-134 (167)
30 2ohw_A YUEI protein; structura 64.3 16 0.00056 22.5 5.0 27 3-30 71-97 (133)
31 2b9s_B DNA topoisomerase I-lik 58.1 2.5 8.5E-05 23.4 0.3 22 15-36 29-50 (62)
32 2glf_A Probable M18-family ami 54.3 8.2 0.00028 28.3 2.6 27 3-30 366-392 (450)
33 3dnf_A ISPH, LYTB, 4-hydroxy-3 52.4 34 0.0012 23.9 5.5 55 10-68 223-278 (297)
34 3dfz_A SIRC, precorrin-2 dehyd 51.5 12 0.0004 24.8 2.8 42 10-53 104-148 (223)
35 3szu_A ISPH, 4-hydroxy-3-methy 51.5 35 0.0012 24.2 5.4 58 10-71 239-297 (328)
36 2glj_A Probable M18-family ami 50.3 9.8 0.00034 27.9 2.5 23 4-27 379-401 (461)
37 3bzy_B ESCU; auto cleavage pro 50.1 15 0.00051 20.9 2.8 21 9-29 27-47 (83)
38 3hww_A 2-succinyl-5-enolpyruvy 48.7 43 0.0015 24.3 5.8 55 13-69 496-554 (556)
39 1rxw_A Flap structure-specific 46.1 18 0.00063 24.9 3.3 34 4-38 125-160 (336)
40 1pjq_A CYSG, siroheme synthase 45.7 27 0.00092 25.1 4.2 43 10-53 85-130 (457)
41 2vt1_B Surface presentation of 44.2 20 0.00069 20.9 2.8 22 9-30 27-48 (93)
42 3gi1_A LBP, laminin-binding pr 42.2 74 0.0025 21.3 5.8 64 4-69 211-282 (286)
43 1y7e_A Probable M18-family ami 41.4 11 0.00039 27.5 1.7 23 4-27 376-398 (458)
44 3kkq_A RAS-related protein M-R 39.8 35 0.0012 19.9 3.5 25 10-34 111-135 (183)
45 1t9h_A YLOQ, probable GTPase E 39.4 19 0.00065 24.8 2.5 31 4-35 100-130 (307)
46 3fiq_A OBP1, RCG36470, odorant 39.3 19 0.00065 21.8 2.2 22 3-25 122-143 (157)
47 3t7y_A YOP proteins translocat 38.7 20 0.0007 21.0 2.2 22 9-30 42-63 (97)
48 2a9k_A RAS-related protein RAL 38.0 22 0.00075 20.7 2.4 27 10-36 111-137 (187)
49 3c01_E Surface presentation of 37.6 22 0.00074 20.9 2.2 22 9-30 27-48 (98)
50 1pq4_A Periplasmic binding pro 36.6 95 0.0032 20.8 6.4 60 4-69 220-285 (291)
51 3t5g_A GTP-binding protein RHE 36.4 42 0.0014 19.5 3.5 21 14-34 103-123 (181)
52 3kl9_A PEPA, glutamyl aminopep 36.0 29 0.00098 24.3 3.0 25 5-30 266-290 (355)
53 1u8z_A RAS-related protein RAL 34.8 27 0.00091 19.8 2.3 26 11-36 98-123 (168)
54 2prs_A High-affinity zinc upta 34.0 1E+02 0.0035 20.4 7.9 64 4-69 206-278 (284)
55 1kao_A RAP2A; GTP-binding prot 33.8 30 0.001 19.5 2.4 24 12-35 98-121 (167)
56 3nkl_A UDP-D-quinovosamine 4-d 33.7 50 0.0017 18.9 3.5 25 10-34 80-104 (141)
57 3ory_A Flap endonuclease 1; hy 32.6 33 0.0011 24.2 2.9 35 3-38 139-175 (363)
58 1sur_A PAPS reductase; assimil 31.3 47 0.0016 20.9 3.2 24 8-31 83-106 (215)
59 4h62_V Mediator of RNA polymer 30.9 46 0.0016 15.4 2.4 22 48-69 5-26 (31)
60 2ce2_X GTPase HRAS; signaling 30.9 29 0.00098 19.6 2.0 25 11-35 97-121 (166)
61 1a76_A Flap endonuclease-1 pro 30.6 36 0.0012 23.3 2.8 35 4-39 126-162 (326)
62 4e3q_A Pyruvate transaminase; 29.9 36 0.0012 24.6 2.8 24 7-30 255-278 (473)
63 2w6k_A COBE; biosynthetic prot 29.9 33 0.0011 21.2 2.3 22 13-35 59-80 (145)
64 2etv_A Iron(III) ABC transport 29.6 94 0.0032 20.9 4.7 29 13-41 109-151 (346)
65 3b02_A Transcriptional regulat 29.6 19 0.00067 21.7 1.1 35 10-44 116-155 (195)
66 2yv5_A YJEQ protein; hydrolase 29.6 44 0.0015 22.4 3.0 25 10-34 98-122 (302)
67 3qe9_Y Exonuclease 1; exonucle 29.4 42 0.0014 23.6 2.9 36 3-39 123-160 (352)
68 2vpu_A TET3, 354AA long hypoth 29.3 32 0.0011 24.0 2.3 45 4-49 266-316 (354)
69 3psh_A Protein HI_1472; substr 29.2 77 0.0026 20.9 4.2 15 16-30 100-114 (326)
70 2rcn_A Probable GTPase ENGC; Y 29.2 27 0.00091 24.7 1.9 31 4-35 143-173 (358)
71 3by5_A Cobalamin biosynthesis 29.1 46 0.0016 20.9 2.9 22 13-35 55-76 (155)
72 1fr2_A Colicin E9 immunity pro 29.0 43 0.0015 19.2 2.5 24 3-26 60-83 (86)
73 2atv_A RERG, RAS-like estrogen 28.9 43 0.0015 20.0 2.7 26 11-36 121-146 (196)
74 3u43_A Colicin-E2 immunity pro 28.4 45 0.0016 19.5 2.5 24 3-26 60-83 (94)
75 2x7j_A 2-succinyl-5-enolpyruvy 27.9 1E+02 0.0035 22.6 5.0 27 13-39 537-563 (604)
76 1kyq_A Met8P, siroheme biosynt 27.7 70 0.0024 21.7 3.8 41 10-53 119-168 (274)
77 2jli_A YSCU, YOP proteins tran 27.6 38 0.0013 20.7 2.2 22 9-30 71-92 (123)
78 2q5c_A NTRC family transcripti 27.5 49 0.0017 21.0 2.8 23 15-37 153-176 (196)
79 2pju_A Propionate catabolism o 27.4 46 0.0016 21.9 2.7 25 14-38 164-188 (225)
80 1gxg_A Colicin E8 immunity pro 27.2 50 0.0017 18.9 2.5 24 3-26 59-82 (85)
81 2lqo_A Putative glutaredoxin R 27.1 87 0.003 17.4 3.9 17 13-29 19-35 (92)
82 3bzs_A ESCU; auto cleavage pro 27.0 39 0.0013 21.0 2.2 22 9-30 81-102 (137)
83 1c1y_A RAS-related protein RAP 26.6 34 0.0012 19.4 1.8 25 11-35 97-121 (167)
84 2fn4_A P23, RAS-related protei 26.6 50 0.0017 18.9 2.6 20 16-35 108-127 (181)
85 2bgw_A XPF endonuclease; hydro 26.4 91 0.0031 19.8 4.0 31 6-36 98-128 (219)
86 3q8k_A Flap endonuclease 1; he 26.3 51 0.0017 23.0 2.9 35 4-39 131-167 (341)
87 2jlj_A YSCU, YOP proteins tran 25.9 42 0.0014 21.0 2.2 22 9-30 80-101 (144)
88 2a4v_A Peroxiredoxin DOT5; yea 25.9 1E+02 0.0035 17.8 6.7 58 13-71 81-156 (159)
89 2izo_A FEN1, flap structure-sp 25.7 43 0.0015 23.2 2.4 34 5-39 124-159 (346)
90 2yvq_A Carbamoyl-phosphate syn 25.6 40 0.0014 20.4 2.0 18 11-28 114-131 (143)
91 3isx_A Endoglucanase; TM1050, 25.6 25 0.00086 24.6 1.2 43 6-49 266-313 (343)
92 2zcw_A TTHA1359, transcription 25.0 40 0.0014 20.3 2.0 35 10-44 123-162 (202)
93 1b43_A Protein (FEN-1); nuclea 24.9 44 0.0015 23.0 2.4 34 4-38 126-161 (340)
94 3nk6_A 23S rRNA methyltransfer 24.7 97 0.0033 20.9 4.0 47 13-60 67-114 (277)
95 3cx3_A Lipoprotein; zinc-bindi 24.4 1.6E+02 0.0054 19.5 6.2 66 3-70 208-281 (284)
96 3b1s_B Flagellar biosynthetic 29.8 16 0.00056 21.0 0.0 20 10-29 28-47 (87)
97 3lrx_A Putative hydrogenase; a 23.8 68 0.0023 19.3 2.9 19 6-24 120-138 (158)
98 2bov_A RAla, RAS-related prote 23.7 40 0.0014 20.0 1.8 25 12-36 109-133 (206)
99 4atq_A 4-aminobutyrate transam 23.4 37 0.0013 24.4 1.8 23 7-29 245-267 (456)
100 3con_A GTPase NRAS; structural 23.3 46 0.0016 19.6 2.0 24 12-35 116-139 (190)
101 4dsu_A GTPase KRAS, isoform 2B 23.3 42 0.0014 19.5 1.8 25 11-35 98-122 (189)
102 3vat_A Dnpep, aspartyl aminope 23.3 43 0.0015 24.9 2.1 25 6-31 405-429 (496)
103 1b93_A Protein (methylglyoxal 23.3 53 0.0018 20.6 2.3 22 10-31 101-122 (152)
104 2nxw_A Phenyl-3-pyruvate decar 23.1 2.1E+02 0.0073 20.7 5.8 53 13-65 498-557 (565)
105 3mfq_A TROA, high-affinity zin 22.6 60 0.0021 21.7 2.6 27 4-31 195-221 (282)
106 2d2r_A Undecaprenyl pyrophosph 22.6 67 0.0023 21.6 2.9 22 9-30 46-67 (245)
107 2ioj_A Hypothetical protein AF 22.5 47 0.0016 19.6 1.9 18 12-29 88-105 (139)
108 3pqc_A Probable GTP-binding pr 22.5 99 0.0034 17.9 3.4 24 11-34 122-145 (195)
109 1oyi_A Double-stranded RNA-bin 22.3 42 0.0015 19.0 1.6 34 3-42 11-44 (82)
110 3qas_B Undecaprenyl pyrophosph 22.2 68 0.0023 21.7 2.8 22 9-30 48-69 (253)
111 3q85_A GTP-binding protein REM 21.8 45 0.0016 19.0 1.7 15 21-35 108-122 (169)
112 2cpg_A REPA protein, transcrip 21.7 49 0.0017 15.5 1.6 17 8-24 11-27 (45)
113 1e5p_A Aphrodisin; lipocalin, 21.4 61 0.0021 18.9 2.2 21 4-25 117-137 (151)
114 2xw6_A MGS, methylglyoxal synt 21.4 43 0.0015 20.6 1.6 21 11-31 94-114 (134)
115 3o63_A Probable thiamine-phosp 21.2 86 0.0029 20.7 3.1 31 10-41 84-114 (243)
116 1m0d_A Endonuclease, endodeoxy 21.1 37 0.0013 21.3 1.2 15 13-27 97-111 (138)
117 4hn9_A Iron complex transport 21.1 1.9E+02 0.0065 19.2 5.2 25 17-41 132-165 (335)
118 1unk_A Colicin E7; immunity pr 21.0 76 0.0026 18.3 2.5 24 3-26 61-84 (87)
119 3hh8_A Metal ABC transporter s 21.0 74 0.0025 21.4 2.9 61 4-69 215-289 (294)
120 3t1o_A Gliding protein MGLA; G 20.9 1.3E+02 0.0045 17.3 4.7 26 10-35 118-148 (198)
121 3sgv_B Undecaprenyl pyrophosph 20.7 76 0.0026 21.6 2.8 20 10-29 49-68 (253)
122 3k2z_A LEXA repressor; winged 20.7 55 0.0019 20.4 2.0 30 9-42 9-38 (196)
123 1wik_A Thioredoxin-like protei 20.7 86 0.003 17.4 2.7 29 13-41 35-69 (109)
124 1vmd_A MGS, methylglyoxal synt 20.6 63 0.0022 20.9 2.3 23 11-33 118-140 (178)
125 1jhf_A LEXA repressor; LEXA SO 20.5 80 0.0028 19.5 2.8 29 9-41 10-38 (202)
126 3qmx_A Glutaredoxin A, glutare 20.5 92 0.0031 17.2 2.8 17 13-29 31-47 (99)
127 2vg0_A Short-chain Z-isoprenyl 20.5 60 0.0021 21.5 2.3 22 9-30 34-55 (227)
128 2yan_A Glutaredoxin-3; oxidore 20.2 84 0.0029 17.2 2.6 17 13-29 37-53 (105)
129 3qq5_A Small GTP-binding prote 20.2 92 0.0031 22.2 3.3 32 4-35 122-153 (423)
130 3ugs_B Undecaprenyl pyrophosph 20.1 81 0.0028 21.1 2.8 20 10-29 38-57 (225)
131 2wem_A Glutaredoxin-related pr 20.1 1E+02 0.0034 17.9 3.0 17 13-29 40-57 (118)
No 1
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.86 E-value=1.3e-22 Score=131.49 Aligned_cols=73 Identities=77% Similarity=1.193 Sum_probs=70.2
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHHHhhcC
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 73 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~~~~~ 73 (73)
||+|++|++++++++.+|+++||||++++||.+||+|||+++++++++|++.+++++.+++++++++|+.|+|
T Consensus 72 IA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~~l~~ 144 (144)
T 2jnb_A 72 MAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 144 (144)
T ss_dssp EETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHHhC
Confidence 6899999889999999999999999999999999999999999889999999888999999999999999986
No 2
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.84 E-value=1.2e-21 Score=125.39 Aligned_cols=73 Identities=67% Similarity=1.094 Sum_probs=67.2
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHHHhhcC
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 73 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~~~~~ 73 (73)
+|+|++|++++++++.+|++++|||++++|+.+||+|||++|++++++|+|.+++++.+++++++++|+.|+|
T Consensus 63 iA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~~~~~~ 135 (135)
T 2aif_A 63 LAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQIEQILV 135 (135)
T ss_dssp EETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTTCC---
T ss_pred EecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHHHHHhC
Confidence 5899999977799999999999999999999999999999998889999999989999999999999999986
No 3
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.84 E-value=3.7e-21 Score=121.39 Aligned_cols=70 Identities=47% Similarity=0.868 Sum_probs=66.4
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHHHhhc
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLL 72 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~~~~ 72 (73)
+|+|++|++++.+++.+|+++||||++++|+.+||+|||+++++++++|+|.+ ++++++++++++|+.|+
T Consensus 53 iA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~d~~--~~~~~~~~~~~~i~~~~ 122 (122)
T 3o85_A 53 IAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHD--ALGNVVAEIVGKVEALV 122 (122)
T ss_dssp EETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEECCCT--TTHHHHHHHHHHHHTTC
T ss_pred EeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEEccc--chHHHHHHHHHHHHhhC
Confidence 58999999789999999999999999999999999999999999999999998 49999999999999875
No 4
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.84 E-value=2.4e-21 Score=124.15 Aligned_cols=73 Identities=75% Similarity=1.164 Sum_probs=68.6
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHHHhhcC
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 73 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~~~~~ 73 (73)
||+|++|++++++++.+|+++||||++++||.+||++||+++++++++|+|.+.+++.++++.+++.++.|++
T Consensus 54 iA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~~~ 126 (134)
T 2ale_A 54 MAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126 (134)
T ss_dssp EETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHhHH
Confidence 6899999889999999999999999999999999999999988788999998888899999999999998863
No 5
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.82 E-value=2.7e-20 Score=117.01 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=65.4
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-c--------hHHHHHHHHHHHHHHhh
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-A--------SQLKTQIQQLKDAIEKL 71 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~--------~~~~~~~~~~~~~~~~~ 71 (73)
||+|++|++++.+++.+|+++||||++++|+.+||+|||+++++++++|+|.| + .++.+.++++.++|++|
T Consensus 42 iA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~d~g~a~~~~~~~~~~y~~~y~~~~~~~~~~ 121 (121)
T 2lbw_A 42 IAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 121 (121)
T ss_dssp ECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEECCSCTTGGGCSSTHHHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 69999998799999999999999999999999999999998888999999987 4 45899999999999875
No 6
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.77 E-value=5.8e-19 Score=110.78 Aligned_cols=66 Identities=36% Similarity=0.680 Sum_probs=57.9
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQQLKD 66 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~~~~~ 66 (73)
||+|++|++++.+++.+|++++|||++++|+.+||++||+++++++++|+|.| ++.+.++++.+++
T Consensus 51 iA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~g~a~~l~~l~~~i~~ 117 (120)
T 1xbi_A 51 IAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVLIEKVNV 117 (120)
T ss_dssp EESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECSCHHHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCCCEEEEEEeccchHHHHHHHHHHHHH
Confidence 58999999789999999999999999999999999999999888999999999 5555555555443
No 7
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.76 E-value=6.3e-19 Score=110.31 Aligned_cols=68 Identities=37% Similarity=0.705 Sum_probs=59.1
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHHHHHHHHHhh
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQQLKDAIEKL 71 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~~~~~~~~~~ 71 (73)
+|+|++|++++.+++.+|++++|||++++|+.+||+|||+++++++++|+|.| ++ +.++.+.+.|+.|
T Consensus 51 iA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~a~---~~~~~l~~~~~~l 119 (120)
T 1vq8_F 51 VAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEAD---ADVEDIADKVEEL 119 (120)
T ss_dssp EESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEEESSCSSCH---HHHHHHHHHHHHT
T ss_pred EeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEecCchHH---HHHHHHHHHHHhc
Confidence 58999998789999999999999999999999999999999889999999998 44 4455566666654
No 8
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.76 E-value=1.4e-18 Score=109.41 Aligned_cols=67 Identities=36% Similarity=0.779 Sum_probs=56.9
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHHHHHHHHHh
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQQLKDAIEK 70 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~~~~~~~~~ 70 (73)
+|+|++|++++.+++.+|++++|||++++|+.+||+|||+++++++++|+|.| ++.+ ++.+.+.++.
T Consensus 50 iA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~---~~~l~~~~~~ 117 (124)
T 2fc3_A 50 IAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETL---VREIVEKVKE 117 (124)
T ss_dssp EETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGGGHHH---HHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEECcchHHHH---HHHHHHHHHH
Confidence 58999998789999999999999999999999999999999888999999998 5443 3444444443
No 9
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.76 E-value=1.1e-18 Score=109.08 Aligned_cols=68 Identities=41% Similarity=0.760 Sum_probs=58.8
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHHHHHHHHHhh
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQQLKDAIEKL 71 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~~~~~~~~~~ 71 (73)
+|+|++|++++.+++.+|++++|||++++|+.+||+|||+++++++++|+|.| ++ ..++.+.+.++.|
T Consensus 49 iA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d~g~a~---~~~~~l~~~~~~l 117 (119)
T 1rlg_A 49 IAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGELR---KELGSLVEKIKGL 117 (119)
T ss_dssp EESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEECGGGH---HHHHHHHHHHHTT
T ss_pred EeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEecCchHH---HHHHHHHHHHHHh
Confidence 58999998789999999999999999999999999999999888999999998 44 4455566666554
No 10
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.70 E-value=7.2e-18 Score=105.57 Aligned_cols=52 Identities=29% Similarity=0.545 Sum_probs=48.7
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE 53 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~ 53 (73)
||+|++|++++.+++.+|+++||||++++||.+||++||+++ +++++|+|.+
T Consensus 47 IA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~-~a~vai~d~~ 98 (113)
T 3jyw_G 47 IANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEVR 98 (113)
T ss_dssp ECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSS-CCSEEEECSC
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCC-cEEEEEEeCC
Confidence 699999988999999999999999999999999999999996 6679999976
No 11
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.69 E-value=2e-17 Score=97.87 Aligned_cols=49 Identities=31% Similarity=0.565 Sum_probs=46.8
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEE
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVT 50 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~ 50 (73)
||+|++|+ ++++++.+|++++|||++++||.+||+|||+++++++++|+
T Consensus 33 iA~D~~~~-~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 33 VAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp EETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 68999996 99999999999999999999999999999999999998885
No 12
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.69 E-value=1.3e-17 Score=101.53 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQ 62 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~ 62 (73)
+|+|++|+ +.++++.+|++++|||++++|+.+||+|||++ .+++++|+|.| +..+.++++
T Consensus 40 iA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~-~~~~vai~d~g~a~~i~~~~~ 100 (101)
T 3on1_A 40 LSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH-ERVVIGVKDAGFSRKLAALID 100 (101)
T ss_dssp EETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS-CCSEEEECCHHHHHHHHHHHH
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc-CeEEEEEECccHHHHHHHHhc
Confidence 58999999 99999999999999999999999999999998 55689999999 888888765
No 13
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.68 E-value=1.1e-16 Score=111.51 Aligned_cols=66 Identities=30% Similarity=0.590 Sum_probs=53.9
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAI 68 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~ 68 (73)
||+|++|++++.|+|++|+++||||++++|+++||++||+++ ++++++++.+ ++.+..++.+.+.|
T Consensus 146 IA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt-~s~Vaitdv~-~EDk~al~kLve~i 211 (255)
T 4a17_F 146 IAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKT-ATAVALTEVR-NEDKAKLQQFSELF 211 (255)
T ss_dssp EESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSC-CSEEEECCCC-HHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCc-ceEEEeeccC-HHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999986 4578898887 23333344444443
No 14
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.67 E-value=3.7e-17 Score=99.71 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQI 61 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~ 61 (73)
+|+|++|+ +.++++.+|++++|||++++|+++||+|||++. +++++|+|.| +..+.+++
T Consensus 41 iA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~-~~~~ai~D~g~a~~i~~~~ 100 (101)
T 3v7q_A 41 LTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKEA-RVVVAVTDQGFANKLISLL 100 (101)
T ss_dssp EETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSSC-CSEEEECCHHHHHHHHHHC
T ss_pred Eecccccc-chhhhcccccccCCCeeeechHHHHHhhhCccc-eEEEEEeccHHHHHHHHhc
Confidence 58999999 999999999999999999999999999999983 4579999999 77777664
No 15
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.65 E-value=1.7e-16 Score=110.66 Aligned_cols=64 Identities=25% Similarity=0.473 Sum_probs=54.7
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC---chHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE---ASQLKTQIQQLK 65 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~---~~~~~~~~~~~~ 65 (73)
||+|++|.|++.|+|.||+++|||||+|+||++||+++|.++ ++++++++.+ ...+.++++.++
T Consensus 149 IA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKt-ct~Va~t~v~~eDk~aLakLveair 215 (258)
T 3iz5_H 149 IAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKT-ASVLCLTTVKNEDKLEFSKILEAIK 215 (258)
T ss_dssp EESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSS-CCSEEEEESCCSCCHHHHHHHHHHT
T ss_pred EeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCcc-ceEEEEEecCHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999886 5568888876 245666655543
No 16
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.64 E-value=1.6e-16 Score=99.05 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=53.3
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEe-CChhhHhhHhCCCCceEEEEEEeCC-chHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPVVACSVTSNE-ASQLKT 59 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v-~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~ 59 (73)
||+|++|+ ++++|+.+|+.++|||+++ +|+.+||+|||+++++++++|+|.| +..+.+
T Consensus 48 lA~D~~~~-~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI~D~G~a~~l~~ 107 (112)
T 3iz5_f 48 LANNCPPL-RKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107 (112)
T ss_dssp ECSCCCHH-HHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEEECCSCCSHHHH
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEEeccchHHHHHh
Confidence 69999998 9999999999999999999 9999999999999888899999999 655544
No 17
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=3.9e-16 Score=96.38 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEe-CChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQ 62 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v-~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~ 62 (73)
+|+|+++ +++.+++.+|++++|||+.+ +|+.+||+|||+++++++++|+|.| +. +.++++
T Consensus 43 iA~D~~~-~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~d~g~a~-i~~~~~ 104 (110)
T 3cpq_A 43 LAGNIPK-DLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSN-IMELVE 104 (110)
T ss_dssp ECTTCBH-HHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEEECTTCC-HHHHHH
T ss_pred EeCCCCH-HHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEecCCHHH-HHHHhh
Confidence 6999955 59999999999999998887 9999999999999777789999999 55 888765
No 18
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.62 E-value=9.8e-17 Score=98.50 Aligned_cols=56 Identities=25% Similarity=0.184 Sum_probs=51.7
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEE-EeCChhhHhhHhCCCCceEEEEEEeCC-chHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTRPVVACSVTSNE-ASQL 57 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~-~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~ 57 (73)
+|+|++|+ ++++++.+|++++|||+ +++|+.+||+|||+++++++++|+|.| +..+
T Consensus 44 lA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~vaI~D~G~a~~l 101 (105)
T 3u5e_c 44 IAANTPVL-RKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDIL 101 (105)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECCSCCTT
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEEEeccchHHHH
Confidence 58999998 99999999999999999 799999999999999888889999999 5544
No 19
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.62 E-value=4.1e-16 Score=94.60 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEe-CChhhHhhHhCCCCceEEEEEEeCC-chHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPVVACSVTSNE-ASQL 57 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v-~sk~~LG~a~G~~r~~~~vai~~~~-~~~~ 57 (73)
+|+|++++ ++++++.+|++++|||+.+ +|+.+||+|||+++++++++|+|.| ++.+
T Consensus 37 iA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~d~g~a~~l 94 (99)
T 3j21_Z 37 VAKNAPKE-IKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94 (99)
T ss_dssp EECCCCHH-HHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEESSCSSCSHH
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEEEccchHHHH
Confidence 58997776 9999999999999997555 9999999999999888899999999 5443
No 20
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.62 E-value=2.5e-16 Score=96.42 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEE-EeCChhhHhhHhCCCCceEEEEEEeCC-chH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTRPVVACSVTSNE-ASQ 56 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~-~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~ 56 (73)
+|+|++|+ +..+++.+|++++|||+ |++|+.+||+|||+++++++++|+|.| +..
T Consensus 44 iA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI~D~G~a~~ 100 (104)
T 4a18_G 44 ISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAGDSDI 100 (104)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEEEECSSCGG
T ss_pred EeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEEeccchHHH
Confidence 69999999 99999999999999999 699999999999999888899999999 543
No 21
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.62 E-value=1.6e-16 Score=96.59 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEe-CChhhHhhHhCCCCceEEEEEEeCC-chHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFV-PSKQALGRACGVTRPVVACSVTSNE-ASQLKTQI 61 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v-~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~ 61 (73)
+|+|++++ ++.+++.+|++++|||+.+ +|+.+||+|||+++++++++|+|.| ++ +.+++
T Consensus 38 iA~D~~~~-~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~d~g~a~-i~~~~ 98 (101)
T 1w41_A 38 VARNARPD-IKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGASR-ILALG 98 (101)
T ss_dssp EETTSCHH-HHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEEECTTCC-GGGGG
T ss_pred EeCCCCHH-HHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEecCCHHH-HHHHh
Confidence 58996665 9999999999999998875 9999999999999777789999999 55 66554
No 22
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.59 E-value=1.2e-15 Score=96.68 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=48.2
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCC-----------CCceEEEEEEeCC
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV-----------TRPVVACSVTSNE 53 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~-----------~r~~~~vai~~~~ 53 (73)
||+|++|.+++.+++.+|++++|||++++|+.+||++||+ ..++++++|+|.|
T Consensus 46 iA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~g 109 (126)
T 2xzm_U 46 VAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCSSLAIRKYA 109 (126)
T ss_dssp EESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTCCCBCTTCCBSCCCCCCEEEESSCC
T ss_pred EeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCccccccCcCceeeEEEEEEEecC
Confidence 6899998669999999999999999999999999999997 3347889999988
No 23
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.59 E-value=1.5e-15 Score=105.96 Aligned_cols=65 Identities=26% Similarity=0.496 Sum_probs=54.8
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCc---hHHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEA---SQLKTQIQQLKD 66 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~---~~~~~~~~~~~~ 66 (73)
||+|++|++++.+++++|+++||||++++||.+||++||+++ +++++|+|.|. ..+.++++.+++
T Consensus 153 IA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~-~s~VAItD~g~eDk~al~kLve~ikt 220 (256)
T 3izc_H 153 IANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKT-SAVAALTEVRAEDEAALAKLVSTIDA 220 (256)
T ss_dssp EESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSS-CCSEEEESSCCSCCHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC-cEEEEeecCChhhHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999994 67899999872 345555544443
No 24
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.59 E-value=1.5e-15 Score=98.42 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCCCchhHHHhHHHHHh--hCCCCEEEeCChhhHhhHhCCC--------C---ceEEEEEEeCC-chHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAE--DKNVPYVFVPSKQALGRACGVT--------R---PVVACSVTSNE-ASQLKTQIQQLK 65 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~--~~~IP~~~v~sk~~LG~a~G~~--------r---~~~~vai~~~~-~~~~~~~~~~~~ 65 (73)
||.|++|.+++++++.+|+ +++|||++++|+.+||+|||+. | ++++++|+|.| +++..+.+.++.
T Consensus 62 LA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~l~~~~ 140 (143)
T 3u5c_M 62 LVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEHF 140 (143)
T ss_dssp CCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHSSCCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHhCcCccccCCCccccceeEEEEEcccchhhHHHHHHHHHH
Confidence 6999997779999999999 9999999999999999999963 2 46789999999 888888877654
No 25
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.55 E-value=2.1e-15 Score=105.72 Aligned_cols=63 Identities=24% Similarity=0.489 Sum_probs=53.1
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCCc---hHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNEA---SQLKTQIQQL 64 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~~---~~~~~~~~~~ 64 (73)
||+|++|++++.+++.+|+++||||++++|+.+||++||+++ +++++|+|.|. ..+..+++.+
T Consensus 157 IA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~-~s~VAItD~G~eD~~al~klve~i 222 (266)
T 2zkr_f 157 IAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKT-CTTVAFTQVNSEDKGALAKLVEAI 222 (266)
T ss_dssp EESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSC-CSEEEETTCSSTTTTHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC-ceEEEEeecCcchHHHHHHHHHHH
Confidence 699999998999999999999999999999999999999994 66799988862 3444444443
No 26
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.45 E-value=4.8e-14 Score=89.14 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=50.2
Q ss_pred CCCCCCchhHHHhHHHHHhhCCCCEE-EeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHHHHHHHH
Q 035100 1 MAADTEPLEILLHLPLLAEDKNVPYV-FVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQIQQLKD 66 (73)
Q Consensus 1 iA~D~~p~~~~~~l~~lc~~~~IP~~-~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~~~~~~~ 66 (73)
||+|++|+ +..+++.+|..+++|+. +++|+.+||+|||+++++++++|+|.| +..+.+++++..+
T Consensus 49 iA~Das~~-~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~~~~ 115 (125)
T 3vi6_A 49 LANNCPAL-RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGE 115 (125)
T ss_dssp ECTTSCHH-HHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEEEECTTCCCC---------
T ss_pred EeCCCCHH-HHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEEeCchhHHHHHHHHHhhcc
Confidence 69999998 99999999887777653 699999999999999888889999999 8888888776543
No 27
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=89.48 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCCCC-chhHHHhHH-----HHHhhCCCCEEEeCChhhHhhHhCC--------------CCceEEEEEEeCC-ch
Q 035100 1 MAADTE-PLEILLHLP-----LLAEDKNVPYVFVPSKQALGRACGV--------------TRPVVACSVTSNE-AS 55 (73)
Q Consensus 1 iA~D~~-p~~~~~~l~-----~lc~~~~IP~~~v~sk~~LG~a~G~--------------~r~~~~vai~~~~-~~ 55 (73)
||.|++ |.++..|++ .+|++++|||++|+|+.+||++||+ .|++++++|++.| ++
T Consensus 59 LA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s 134 (165)
T 2kg4_A 59 LAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQ 134 (165)
T ss_dssp EECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCC
T ss_pred EeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCCcccccccccccCCCcccceEEEEecccccc
Confidence 589997 665555555 9999999999999999999999997 3778899999998 53
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=98.51 E-value=2.4e-07 Score=60.06 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCCCCC-------chhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCC------CCceEEEEEEeCC
Q 035100 1 MAADTE-------PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGV------TRPVVACSVTSNE 53 (73)
Q Consensus 1 iA~D~~-------p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~------~r~~~~vai~~~~ 53 (73)
+|.|.+ |. .++-+.++|.+++||++.|.+..+||+++|+ .|..++++|++.|
T Consensus 49 LA~dcd~e~D~a~~~-y~kLveAlC~E~~I~lIkVdd~kkLgew~Gk~d~~g~pr~~sCvvV~d~g 113 (146)
T 3cg6_A 49 LAADEEDEGDIALQI-HFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPGDLHCILISNPN 113 (146)
T ss_dssp EECCTGGGGCHHHHH-HHHHHHHHHHHTTCEEEEECCHHHHHHHC----------CCSEEEEECCC
T ss_pred ecCCCccccchhHHH-HHHHHHHHHhhcCCCeEEeCchhHHHHHhCCcCCCCCCCCCEEEEEecCC
Confidence 467876 35 8888999999999999999999999999994 3557789999887
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.17 E-value=4.2e-06 Score=55.19 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhhHhCCC------CceEEEEEEeCC
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGRACGVT------RPVVACSVTSNE 53 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~------r~~~~vai~~~~ 53 (73)
.++-+.++|.+++||++.|.+..+||+++|.. +..++++|++.+
T Consensus 85 y~kLVeAlC~E~~I~LIkV~d~kkLgew~G~~~~~~k~~~csCVlVtd~g 134 (167)
T 3ffm_A 85 HFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPGDLHCILISNPN 134 (167)
T ss_dssp HHHHHHHHHHHTTCEEEEESCHHHHHHHHTTSCCSSSCSCCSEEEEECSS
T ss_pred HHHHHHHHHhhcCCCeEEeCCcchHHHHhCcCCCCCCCCccEEEEECCCC
Confidence 47788999999999999999999999999952 357889999987
No 30
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=64.27 E-value=16 Score=22.54 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCC
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~s 30 (73)
++++.. ....+..+|+++|+|+..|.+
T Consensus 71 g~l~~~-~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 71 GELQYQ-SYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp TTSCHH-HHHHHHHHHHHTTCCEEEECC
T ss_pred CCCCHH-HHHHHHHHHHHcCCCeEEecC
Confidence 345555 889999999999999999988
No 31
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=58.09 E-value=2.5 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.2
Q ss_pred HHHHhhCCCCEEEeCChhhHhh
Q 035100 15 PLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 15 ~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
.++|+.++||+.-+++|...-+
T Consensus 29 vaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 29 CSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp HHHHHHTTCCGGGTSCHHHHHH
T ss_pred hhhhhhcCCCHHHHhhHHHHHh
Confidence 5899999999999999987664
No 32
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}
Probab=54.32 E-value=8.2 Score=28.26 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=22.4
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCC
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~s 30 (73)
.|+++. +...+..+|+++||||=+.-.
T Consensus 366 ~~~~~~-~~~~~~~ia~~~~Ip~Q~~~~ 392 (450)
T 2glf_A 366 NDAHAE-FVARVRKVLNEQGVIWQVATL 392 (450)
T ss_dssp CBCCHH-HHHHHHHHHHHTTCCEEECCS
T ss_pred ccCCHH-HHHHHHHHHHHcCCCEEEEEe
Confidence 366777 999999999999999988443
No 33
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=52.40 E-value=34 Score=23.91 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=37.4
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhh-HhCCCCceEEEEEEeCCchHHHHHHHHHHHHH
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGR-ACGVTRPVVACSVTSNEASQLKTQIQQLKDAI 68 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~-a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~ 68 (73)
-..+|...|++.|.|-.++.+-++|-. ++. +...++|+.+- +.=..+++++.+.+
T Consensus 223 NT~rL~eia~~~~~~ty~Ie~~~el~~~wl~---~~~~VGITAGA-STP~~li~eVi~~l 278 (297)
T 3dnf_A 223 NTRRLYYISKELNPNTYHIETAEELQPEWFR---GVKRVGISAGA-STPDWIIEQVKSRI 278 (297)
T ss_dssp HHHHHHHHHHHHCSSEEEESSGGGCCGGGGT---TCSEEEEEECT-TCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCEEEeCChHHCCHHHhC---CCCEEEEeecC-CCCHHHHHHHHHHH
Confidence 357899999999999999999999874 322 33468888764 22233344444443
No 34
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=51.50 E-value=12 Score=24.84 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=24.8
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhhHhC---CCCceEEEEEEeCC
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGRACG---VTRPVVACSVTSNE 53 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G---~~r~~~~vai~~~~ 53 (73)
+-..+-..|+ .|||+..+.+. +++...= ..|+--.++|..+|
T Consensus 104 ~N~~I~~~ak-~gi~VNvvD~p-~~~~f~~Paiv~rg~l~iaIST~G 148 (223)
T 3dfz_A 104 VNKFVKQHIK-NDQLVNMASSF-SDGNIQIPAQFSRGRLSLAISTDG 148 (223)
T ss_dssp HHHHHHHHSC-TTCEEEC------CCSEECCEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHh-CCCEEEEeCCc-ccCeEEEeeEEEeCCEEEEEECCC
Confidence 6778888898 99998776664 4443210 12334578998887
No 35
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=51.48 E-value=35 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhh-HhCCCCceEEEEEEeCCchHHHHHHHHHHHHHHhh
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGR-ACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKL 71 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~-a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~~~ 71 (73)
-..+|...|++.|.|-.++.+.++|-. ++. +...++|+.+- +.=..+++++.+.+..+
T Consensus 239 NT~rL~eia~~~g~~ty~Ie~~~el~~~wl~---g~~~VGITAGA-STP~~lieeVi~~l~~~ 297 (328)
T 3szu_A 239 NSNRLAELAQRMGKRAFLIDDAKDIQEEWVK---EVKCVGVTAGA-SAPDILVQNVVARLQQL 297 (328)
T ss_dssp HHHHHHHHHHHTTCEEEEESSGGGCCHHHHT---TCSEEEEEECT-TCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEeCChHHCCHHHhC---CCCEEEEeecC-CCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999874 332 23468888764 33334555555555543
No 36
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}
Probab=50.35 E-value=9.8 Score=27.88 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEE
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVF 27 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~ 27 (73)
|+++. +...+..+|+++||||=.
T Consensus 379 ~~~~~-~~~~l~~ia~~~~Ip~Q~ 401 (461)
T 2glj_A 379 DANPE-YIAELRRILSKESVNWQT 401 (461)
T ss_dssp CCCHH-HHHHHHHHHHHTCCCEEE
T ss_pred cCCHH-HHHHHHHHHHHcCCCeEE
Confidence 56677 999999999999999988
No 37
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=50.07 E-value=15 Score=20.95 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=17.6
Q ss_pred hHHHhHHHHHhhCCCCEEEeC
Q 035100 9 EILLHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~ 29 (73)
++-.++...++++|||+..-.
T Consensus 27 ~~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEECH
T ss_pred HHHHHHHHHHHHcCCCEEeCH
Confidence 467899999999999997644
No 38
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=48.66 E-value=43 Score=24.33 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=34.5
Q ss_pred hHHHHHhhCCCCEEEeCChhhHhhHh----CCCCceEEEEEEeCCchHHHHHHHHHHHHHH
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALGRAC----GVTRPVVACSVTSNEASQLKTQIQQLKDAIE 69 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG~a~----G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~ 69 (73)
.+..+|+.+|+++..+.+.++|-.++ ..++++..=+.++.. +....++++.+.+.
T Consensus 496 d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~--~~~~~l~~~~~~~~ 554 (556)
T 3hww_A 496 HFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDT--DGAQTLQQLLAQVS 554 (556)
T ss_dssp CSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEEEECCSS--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEEEECCcc--ccHHHHHHHHHHhh
Confidence 35679999999999999999887654 333444333445555 33344444444443
No 39
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=46.09 E-value=18 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCCh--hhHhhHh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSK--QALGRAC 38 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk--~~LG~a~ 38 (73)
+++|. ....+..+++..||||+..++- ++|+..+
T Consensus 125 ~vt~~-~~~~~~~lL~~~gi~~i~apgeAEA~lA~la 160 (336)
T 1rxw_A 125 RVDEY-IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMA 160 (336)
T ss_dssp CCCHH-HHHHHHHHHHHTTCCEEECSSCHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHhCCCCEEEcCchHHHHHHHHH
Confidence 45555 7788999999999999999993 3566665
No 40
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=45.67 E-value=27 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhhHhC---CCCceEEEEEEeCC
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGRACG---VTRPVVACSVTSNE 53 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G---~~r~~~~vai~~~~ 53 (73)
+-..+...|+++|||+..+.. -+++...= ..+.-..++|+.+|
T Consensus 85 ~n~~i~~~a~~~~i~vn~~d~-~e~~~~~~pa~~~~~~l~iaIsT~G 130 (457)
T 1pjq_A 85 VNQRVSDAAESRRIFCNVVDA-PKAASFIMPSIIDRSPLMVAVSSGG 130 (457)
T ss_dssp HHHHHHHHHHHTTCEEEETTC-TTSSSEECCEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHHcCCEEEECCC-cccCceEeeeEEEeCCeEEEEECCC
Confidence 567888999999999766665 44553320 01222368898777
No 41
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=44.23 E-value=20 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.0
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
++-.++...++++|||++.-..
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEECHH
Confidence 4678899999999999976543
No 42
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=42.19 E-value=74 Score=21.30 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCCh--hhHhhHhCCCCceEEEEEEeC------CchHHHHHHHHHHHHHH
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSK--QALGRACGVTRPVVACSVTSN------EASQLKTQIQQLKDAIE 69 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk--~~LG~a~G~~r~~~~vai~~~------~~~~~~~~~~~~~~~~~ 69 (73)
+.+|. -+..+.+++++++|+++++.+. ..+-+.+-.+.++.++ .++. +..+|.+.|+..-+.+.
T Consensus 211 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~-~l~pl~~~~~~~~~Y~~~m~~n~~~l~ 282 (286)
T 3gi1_A 211 EPSPR-QLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVK-TLSPLEAAPSGNKTYLENLRANLEVLY 282 (286)
T ss_dssp -CCHH-HHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEE-ECCCSCSCCSSSCCHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEE-EecccccCCCCcCCHHHHHHHHHHHHH
Confidence 45666 6788999999999999999764 2333333222223223 3321 12367777766555544
No 43
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4
Probab=41.37 E-value=11 Score=27.51 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.1
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEE
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVF 27 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~ 27 (73)
|+++. +...+..+|++.||||-.
T Consensus 376 ~~~~~-~~~~l~~~a~~~~Ip~Q~ 398 (458)
T 1y7e_A 376 DADAE-LVSYIRQLLNKNNIAWQV 398 (458)
T ss_dssp --CHH-HHHHHHHHHHHHTCCEEE
T ss_pred cCCHH-HHHHHHHHHHHcCCCeEE
Confidence 45666 899999999999999977
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=39.82 E-value=35 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhH
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQAL 34 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~L 34 (73)
+...+...+...++|++.+.+|.+|
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCc
Confidence 3344445556689999999999886
No 45
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=39.44 E-value=19 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=23.7
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
+.+++ .+..+...++..++|.+.+.+|.+|-
T Consensus 100 ~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 100 SFSTA-LLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TCCHH-HHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred CCCHH-HHHHHHHHHHHCCCCEEEEEECCccC
Confidence 45555 77777888888888888888888763
No 46
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=39.28 E-value=19 Score=21.84 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.0
Q ss_pred CCCCchhHHHhHHHHHhhCCCCE
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPY 25 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~ 25 (73)
.|++|. .+.+|..+|+..|+|=
T Consensus 122 ~~~s~e-~~e~F~~~~~~~Gl~~ 143 (157)
T 3fiq_A 122 EDLNKA-QKQELRKLAEEYNIPN 143 (157)
T ss_dssp SCCCHH-HHHHHHHHHHHTTCCG
T ss_pred CCCCHH-HHHHHHHHHHHcCCCH
Confidence 367777 9999999999999983
No 47
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=38.65 E-value=20 Score=21.02 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=17.9
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
++-.++...++++|||+..-..
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCeEEECHH
Confidence 4678899999999999976443
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=38.01 E-value=22 Score=20.70 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=19.7
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhh
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
+...+...+...++|++.+.+|.+|-.
T Consensus 111 ~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 111 FREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 334555556566899999999999743
No 49
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=37.65 E-value=22 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.0
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
++-.++...++++|||++.-..
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCeecCHH
Confidence 4678899999999999976543
No 50
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=36.59 E-value=95 Score=20.78 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=38.1
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChh------hHhhHhCCCCceEEEEEEeCCchHHHHHHHHHHHHHH
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQ------ALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIE 69 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~------~LG~a~G~~r~~~~vai~~~~~~~~~~~~~~~~~~~~ 69 (73)
+.+|. -+..+..++++++|+++++.+.. .|.+..|.+ +..++.-..+|.+.|+..-+.+.
T Consensus 220 eps~~-~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~-----v~~ld~l~~~Y~~~m~~n~~~l~ 285 (291)
T 1pq4_A 220 EPSAQ-ELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAG-----VELLDPLAADWSSNLKAVAQKIA 285 (291)
T ss_dssp CCCHH-HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCE-----EEEECTTCSSHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCe-----EEEEcCchhhHHHHHHHHHHHHH
Confidence 45677 67789999999999999986542 244444522 23344433467777766555544
No 51
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=36.36 E-value=42 Score=19.54 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHhhCCCCEEEeCChhhH
Q 035100 14 LPLLAEDKNVPYVFVPSKQAL 34 (73)
Q Consensus 14 l~~lc~~~~IP~~~v~sk~~L 34 (73)
+...+...++|++.+.+|.+|
T Consensus 103 ~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 103 LLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp HHHHC----CCEEEEEECTTC
T ss_pred HHHhcCCCCCCEEEEEECccc
Confidence 334444568999999999887
No 52
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=36.04 E-value=29 Score=24.26 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCchhHHHhHHHHHhhCCCCEEEeCC
Q 035100 5 TEPLEILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 5 ~~p~~~~~~l~~lc~~~~IP~~~v~s 30 (73)
.+|. +...+..+|++.||||-++.+
T Consensus 266 ~~~~-l~~~l~~~a~~~gIp~q~~~~ 290 (355)
T 3kl9_A 266 LLPG-MKDFLLTTAEEAGIKYQYYCG 290 (355)
T ss_dssp CCHH-HHHHHHHHHHHTTCCEEEEEC
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECC
Confidence 4555 999999999999999988653
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=34.75 E-value=27 Score=19.81 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=18.9
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhHhh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
...+...+...++|++.+.+|.+|-.
T Consensus 98 ~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 98 REQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHHHHHhcCCCCCcEEEEEECccccc
Confidence 34445555556899999999999853
No 54
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=34.04 E-value=1e+02 Score=20.41 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCCh--hhHhhHhCCCCceEEEEEEeC-C------chHHHHHHHHHHHHHH
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSK--QALGRACGVTRPVVACSVTSN-E------ASQLKTQIQQLKDAIE 69 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk--~~LG~a~G~~r~~~~vai~~~-~------~~~~~~~~~~~~~~~~ 69 (73)
+.+|. -+..+..++++++|+++++.+. .++.+.+-.+.++.++ .++. + ..+|.+.|+..-+.+.
T Consensus 206 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~-~ld~l~~~~~~~~~~Y~~~m~~n~~~l~ 278 (284)
T 2prs_A 206 QPGAQ-RLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG-TLDPLGTNIKLGKTSYSEFLSQLANQYA 278 (284)
T ss_dssp CCCHH-HHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEE-ECCTTCTTSCCSTTHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEE-EeccCcccCCCCcccHHHHHHHHHHHHH
Confidence 45666 6778999999999999999754 3455555444444333 3443 1 1367777776555544
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=33.82 E-value=30 Score=19.54 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=17.7
Q ss_pred HhHHHHHhhCCCCEEEeCChhhHh
Q 035100 12 LHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 12 ~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
..+...+...++|++.+.+|.+|-
T Consensus 98 ~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 98 DQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp HHHHHHTTTSCCCEEEEEECGGGG
T ss_pred HHHHHhcCCCCCCEEEEEECCccc
Confidence 334445555789999999999874
No 56
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=33.73 E-value=50 Score=18.89 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.0
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhH
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQAL 34 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~L 34 (73)
....+...|+.+|+.+..+++..++
T Consensus 80 ~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 80 QKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp HHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred HHHHHHHHHHHcCCeEEECCCHHHH
Confidence 6677888888888888888887764
No 57
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=32.62 E-value=33 Score=24.21 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=27.2
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCChh--hHhhHh
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPSKQ--ALGRAC 38 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~--~LG~a~ 38 (73)
.+++|. ....+..+++..||||+..++-+ +++.++
T Consensus 139 ~~vt~~-~~~~i~~lL~~~GIp~i~apgEADaqiA~La 175 (363)
T 3ory_A 139 AKLTEE-MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIV 175 (363)
T ss_dssp CCCCHH-HHHHHHHHHHHHTCCEEECSSCHHHHHHHHH
T ss_pred ccCCHH-HHHHHHHHHHHCCCCEEEeCccHHHHHHHHH
Confidence 456665 78899999999999999999832 366554
No 58
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=31.33 E-value=47 Score=20.87 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.5
Q ss_pred hhHHHhHHHHHhhCCCCEEEeCCh
Q 035100 8 LEILLHLPLLAEDKNVPYVFVPSK 31 (73)
Q Consensus 8 ~~~~~~l~~lc~~~~IP~~~v~sk 31 (73)
.++..++..+|+++|||+..+...
T Consensus 83 ~e~~~~v~~~~~~~gi~~~v~~~~ 106 (215)
T 1sur_A 83 PETYRFIDELTDKLKLNLKVYRAT 106 (215)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCC
Confidence 458899999999999999988654
No 59
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=30.95 E-value=46 Score=15.44 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=13.4
Q ss_pred EEEeCCchHHHHHHHHHHHHHH
Q 035100 48 SVTSNEASQLKTQIQQLKDAIE 69 (73)
Q Consensus 48 ai~~~~~~~~~~~~~~~~~~~~ 69 (73)
+++..+.+++.++++.|.+.+-
T Consensus 5 gvtrfdekqieelldncietfv 26 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH
Confidence 3444556789999999887653
No 60
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=30.89 E-value=29 Score=19.55 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
...+...+...++|++.+.+|.+|-
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhh
Confidence 3344444555689999999998864
No 61
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=30.56 E-value=36 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhh--HhhHhC
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQA--LGRACG 39 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~--LG~a~G 39 (73)
++.|. ....+..+++..||||+..++-++ +|..+-
T Consensus 126 ~vt~~-~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~ 162 (326)
T 1a76_A 126 YLTPK-MVENCKYLLSLMGIPYVEAPSEGEAQASYMAK 162 (326)
T ss_dssp SSCHH-HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCeEECCccHHHHHHHHHH
Confidence 34454 788899999999999999998332 665544
No 62
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=29.90 E-value=36 Score=24.57 Aligned_cols=24 Identities=4% Similarity=0.038 Sum_probs=19.7
Q ss_pred chhHHHhHHHHHhhCCCCEEEeCC
Q 035100 7 PLEILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 7 p~~~~~~l~~lc~~~~IP~~~v~s 30 (73)
|.+....+.++|+++||.++.=.-
T Consensus 255 ~~~fl~~lr~lc~~~gilLI~DEV 278 (473)
T 4e3q_A 255 AKGYFQAILPILRKYDIPVISDEV 278 (473)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEECT
T ss_pred CHHHHHHHHHHhcccceEEeccCc
Confidence 345899999999999999987443
No 63
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=29.88 E-value=33 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=16.0
Q ss_pred hHHHHHhhCCCCEEEeCChhhHh
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
-+.++|+++|+|+.++ +.++|.
T Consensus 59 gL~~~A~~lg~pl~~~-~~eeL~ 80 (145)
T 2w6k_A 59 GLRQLATLLERPVHFL-APAVLH 80 (145)
T ss_dssp HHHHHHHHHTSCEEEE-CHHHHH
T ss_pred HHHHHHHHhCCCcEEe-CHHHHh
Confidence 4778999999999886 334443
No 64
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=29.65 E-value=94 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred hHHHHHhhCCCCEEEeCCh--------------hhHhhHhCCC
Q 035100 13 HLPLLAEDKNVPYVFVPSK--------------QALGRACGVT 41 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk--------------~~LG~a~G~~ 41 (73)
.+..+.+..|||++.+... ..||+++|++
T Consensus 109 ~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 109 TAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 3445566779999998642 3489999965
No 65
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=29.62 E-value=19 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHhHHHHHhhCCCC-----EEEeCChhhHhhHhCCCCce
Q 035100 10 ILLHLPLLAEDKNVP-----YVFVPSKQALGRACGVTRPV 44 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP-----~~~v~sk~~LG~a~G~~r~~ 44 (73)
+...+..+++.++.+ +..-.|..+|+..+|.+|.+
T Consensus 116 l~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 155 (195)
T 3b02_A 116 IARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRES 155 (195)
T ss_dssp HHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHH
Confidence 566777778777654 45667999999999988633
No 66
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.62 E-value=44 Score=22.40 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhH
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQAL 34 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~L 34 (73)
.+..+...++..++|.+.+.+|.+|
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDL 122 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccC
Confidence 4455566677788999999999887
No 67
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=29.36 E-value=42 Score=23.57 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=27.5
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCChhh--HhhHhC
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPSKQA--LGRACG 39 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~--LG~a~G 39 (73)
.++.|. +...+..+++..||||+..+.-++ +|.+.-
T Consensus 123 ~~vt~~-~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~ 160 (352)
T 3qe9_Y 123 INITHA-MAHKVIKAARSQGVDCLVAPYEADAQLAYLNK 160 (352)
T ss_dssp CCCCHH-HHHHHHHHHHHTTCEEEECSSCHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHcCCcEEECCcchHHHHHHHHH
Confidence 366776 889999999999999998875443 555443
No 68
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=29.28 E-value=32 Score=24.02 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=29.2
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEe-C---ChhhHhhHh--CCCCceEEEEE
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFV-P---SKQALGRAC--GVTRPVVACSV 49 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v-~---sk~~LG~a~--G~~r~~~~vai 49 (73)
..+|. +...+...|++.||||-.. . +-.+.|.+. +...+++.+++
T Consensus 266 ~~~~~-l~~~l~~~a~~~gIp~q~~~~~g~gGtDa~~i~~a~~Gipt~~Igv 316 (354)
T 2vpu_A 266 NINPK-LRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSI 316 (354)
T ss_dssp TSCHH-HHHHHHHHHHHTTCCCEEEECCSCCSSTHHHHHTSTTCCEEEEEEE
T ss_pred CCCHH-HHHHHHHHHHHcCCCcEEEeCCCCCccHHHHHHHhcCCCCEEEECc
Confidence 34566 9999999999999999763 2 234555442 22345555555
No 69
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=29.24 E-value=77 Score=20.85 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.0
Q ss_pred HHHhhCCCCEEEeCC
Q 035100 16 LLAEDKNVPYVFVPS 30 (73)
Q Consensus 16 ~lc~~~~IP~~~v~s 30 (73)
+.-++.|||++.+..
T Consensus 100 ~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 100 KQISDVNIPVVAISL 114 (326)
T ss_dssp HHHHTTTCCEEEECS
T ss_pred HHHHHcCCCEEEEec
Confidence 344677999999864
No 70
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=29.18 E-value=27 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.031 Sum_probs=23.9
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
+.+++ .+..+..+++..++|.+.+.+|.+|-
T Consensus 143 ~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 143 ELSLN-IIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp TCCHH-HHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred CCCHH-HHHHHHHHHHhcCCCEEEEEECccCC
Confidence 44555 66777788888889999998888874
No 71
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=29.14 E-value=46 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=16.3
Q ss_pred hHHHHHhhCCCCEEEeCChhhHh
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
-|.++|+++|+|+.++ +.++|.
T Consensus 55 gL~e~A~~lgvPl~~~-~~eeL~ 76 (155)
T 3by5_A 55 GLAEAAKGLSLSLEIV-AQERLE 76 (155)
T ss_dssp HHHHHHHHTTCCEEEC-CHHHHH
T ss_pred HHHHHHHHhCCCeEEE-CHHHHh
Confidence 4778999999999886 444443
No 72
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=29.02 E-value=43 Score=19.20 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=21.2
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEE
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYV 26 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~ 26 (73)
.|.+|.+++..+..|...+|-|.+
T Consensus 60 ~e~spE~Iv~~ik~wRa~~G~pgF 83 (86)
T 1fr2_A 60 DDDSPSGIVNTVKQWRAANGKSGF 83 (86)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCccc
Confidence 477899999999999999999864
No 73
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=28.91 E-value=43 Score=19.99 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhHhh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
...+...+...++|++.+.+|.+|-.
T Consensus 121 ~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 121 KNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhhCCCCCcEEEEEECccccc
Confidence 34444555567999999999999854
No 74
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=28.45 E-value=45 Score=19.52 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.2
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEE
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYV 26 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~ 26 (73)
.|.+|.+++..+..|-..+|-|.+
T Consensus 60 ~e~SPEgIv~~IKeWRa~nG~pgF 83 (94)
T 3u43_A 60 REDSPEGIVKEIKEWRAANGKSGF 83 (94)
T ss_dssp SCSSHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCccc
Confidence 377899999999999999999964
No 75
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=27.93 E-value=1e+02 Score=22.56 Aligned_cols=27 Identities=15% Similarity=-0.005 Sum_probs=23.8
Q ss_pred hHHHHHhhCCCCEEEeCChhhHhhHhC
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALGRACG 39 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG~a~G 39 (73)
.+..+++-+|+++..+.+.++|-.++.
T Consensus 537 d~~~~a~a~G~~~~~v~~~~el~~al~ 563 (604)
T 2x7j_A 537 DFKHAAALYGGTYSCPASWDEFKTAYA 563 (604)
T ss_dssp CTHHHHHHTTCEEECCSSHHHHHHHCC
T ss_pred CHHHHHHHcCCeEEecCCHHHHHHHHH
Confidence 467799999999999999999998764
No 76
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=27.71 E-value=70 Score=21.67 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=28.6
Q ss_pred HHHhHHHHHhhC---CCCEEEeCChhhHhh-----HhCCCCce-EEEEEEeCC
Q 035100 10 ILLHLPLLAEDK---NVPYVFVPSKQALGR-----ACGVTRPV-VACSVTSNE 53 (73)
Q Consensus 10 ~~~~l~~lc~~~---~IP~~~v~sk~~LG~-----a~G~~r~~-~~vai~~~~ 53 (73)
+-..+-..|+++ ++|+..+...+ ++. .+ .++- -.++|+.+|
T Consensus 119 ~n~~I~~~Ar~~f~~~i~VNvvd~pe-l~~f~~Pa~~--~~g~~l~IaIST~G 168 (274)
T 1kyq_A 119 ESARIYHLCKERFGKQQLVNVADKPD-LCDFYFGANL--EIGDRLQILISTNG 168 (274)
T ss_dssp HHHHHHHHHHHHHCTTSEEEETTCGG-GBSEECCEEE--EETTTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcc-cCeeEeeeEE--EeCCCEEEEEECCC
Confidence 678899999999 99998776644 443 21 1222 478998887
No 77
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=27.65 E-value=38 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.9
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
.+-.++...++++|||+..-..
T Consensus 71 ~~A~~I~~~A~e~~VPi~e~~~ 92 (123)
T 2jli_A 71 AQVQTVRKIAEEEGVPILQRIP 92 (123)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHH
Confidence 3678899999999999976543
No 78
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.52 E-value=49 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=12.6
Q ss_pred HHHHhhCCCCEEEeCC-hhhHhhH
Q 035100 15 PLLAEDKNVPYVFVPS-KQALGRA 37 (73)
Q Consensus 15 ~~lc~~~~IP~~~v~s-k~~LG~a 37 (73)
..+|+++|+|.+.+.| ++.+-+|
T Consensus 153 ~~~A~~~Gl~~vli~sg~eSI~~A 176 (196)
T 2q5c_A 153 TDEAIKQGLYGETINSGEESLRRA 176 (196)
T ss_dssp HHHHHHTTCEEEECCCCHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCHHHHHHH
Confidence 4556666666666665 4444443
No 79
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.44 E-value=46 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCEEEeCChhhHhhHh
Q 035100 14 LPLLAEDKNVPYVFVPSKQALGRAC 38 (73)
Q Consensus 14 l~~lc~~~~IP~~~v~sk~~LG~a~ 38 (73)
...+|+++|+|.+.+.|++.+-+|+
T Consensus 164 ~~~~A~~~Gl~~vlI~s~eSI~~Ai 188 (225)
T 2pju_A 164 ITDLAEEAGMTGIFIYSAATVRQAF 188 (225)
T ss_dssp HHHHHHHTTSEEEESSCHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHH
Confidence 3567888888888888877666553
No 80
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=27.19 E-value=50 Score=18.91 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEE
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYV 26 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~ 26 (73)
.|.+|.+++..+..|...+|-|.+
T Consensus 59 ~e~spE~Iv~~ik~wRa~~g~p~F 82 (85)
T 1gxg_A 59 NDGSPEAVIKEIKEWRAANGKSGF 82 (85)
T ss_dssp CCSSHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCHHHHHHHHHHHHHHcCCccc
Confidence 477899999999999999999863
No 81
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=27.06 E-value=87 Score=17.41 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=12.5
Q ss_pred hHHHHHhhCCCCEEEeC
Q 035100 13 HLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~ 29 (73)
....+-+++||||.++.
T Consensus 19 ~aK~~L~~~gi~y~~id 35 (92)
T 2lqo_A 19 RLKTALTANRIAYDEVD 35 (92)
T ss_dssp HHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHhcCCceEEEE
Confidence 34566678899998865
No 82
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=27.01 E-value=39 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=18.0
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
.+-.++...++++|||++.-+.
T Consensus 81 ~~A~~I~e~A~e~gVPi~e~~~ 102 (137)
T 3bzs_A 81 AKALQIIKLAELYDIPVIEDIP 102 (137)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHH
Confidence 3678899999999999976543
No 83
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=26.61 E-value=34 Score=19.40 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=17.7
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
...+...+...++|++.+.+|.+|-
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHhhCcCCCcEEEEEECcccc
Confidence 3344444445689999999998874
No 84
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=26.57 E-value=50 Score=18.95 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.6
Q ss_pred HHHhhCCCCEEEeCChhhHh
Q 035100 16 LLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 16 ~lc~~~~IP~~~v~sk~~LG 35 (73)
......++|++.+.+|.+|-
T Consensus 108 ~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 108 RVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp HHHTSSCCCEEEEEECGGGG
T ss_pred HhcCCCCCCEEEEEECcccc
Confidence 33445689999999999874
No 85
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=26.37 E-value=91 Score=19.78 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=26.7
Q ss_pred CchhHHHhHHHHHhhCCCCEEEeCChhhHhh
Q 035100 6 EPLEILLHLPLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 6 ~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
.|..+...+..+|-.+|+++++..|.++-++
T Consensus 98 ~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~ 128 (219)
T 2bgw_A 98 RERSLYAAMAALQLDYGIRLMNTMDPKGTAL 128 (219)
T ss_dssp THHHHHHHHHHHHHHSCCEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCceEEEcCCHHHHHH
Confidence 4667888899999999999999999998664
No 86
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.27 E-value=51 Score=22.99 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=25.6
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhh--HhhHhC
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQA--LGRACG 39 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~--LG~a~G 39 (73)
++++. ....+..+.+..||||+..++-++ +|.++-
T Consensus 131 ~vt~~-q~~~~~~lL~~~gip~i~ap~EADd~ia~La~ 167 (341)
T 3q8k_A 131 KVTKQ-HNDECKHLLSLMGIPYLDAPSEAEASCAALVK 167 (341)
T ss_dssp CCCHH-HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEECCccHHHHHHHHHh
Confidence 44455 677889999999999999998332 555443
No 87
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=25.90 E-value=42 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.0
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
.+-.++...++++|||++.-+.
T Consensus 80 ~~A~~I~e~A~e~gVPi~e~~~ 101 (144)
T 2jlj_A 80 AQVQTVRKIAEEEGVPILQRIP 101 (144)
T ss_dssp HHHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHH
Confidence 3678899999999999976543
No 88
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=25.86 E-value=1e+02 Score=17.76 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=35.1
Q ss_pred hHHHHHhhCCCCEEEeCC-hhhHhhHhCCCCce------EEEEEEeCC-----------chHHHHHHHHHHHHHHhh
Q 035100 13 HLPLLAEDKNVPYVFVPS-KQALGRACGVTRPV------VACSVTSNE-----------ASQLKTQIQQLKDAIEKL 71 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~s-k~~LG~a~G~~r~~------~~vai~~~~-----------~~~~~~~~~~~~~~~~~~ 71 (73)
.+..+++++++++-.+.+ ..++.++.|....- +...| .+| .....+.++++++.++.|
T Consensus 81 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 81 SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp HHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 456677888888776654 55788888875321 34445 443 133456666666666554
No 89
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=25.66 E-value=43 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCchhHHHhHHHHHhhCCCCEEEeCChhh--HhhHhC
Q 035100 5 TEPLEILLHLPLLAEDKNVPYVFVPSKQA--LGRACG 39 (73)
Q Consensus 5 ~~p~~~~~~l~~lc~~~~IP~~~v~sk~~--LG~a~G 39 (73)
+++. ....+..+++..||||+..++-++ +|.++-
T Consensus 124 vt~~-~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~ 159 (346)
T 2izo_A 124 LSNI-MVEESKKLLRAMGIPIVQAPSEGEAEAAYLNK 159 (346)
T ss_dssp -CHH-HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHh
Confidence 3344 778889999999999999998332 665543
No 90
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=25.65 E-value=40 Score=20.43 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHhHHHHHhhCCCCEEEe
Q 035100 11 LLHLPLLAEDKNVPYVFV 28 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v 28 (73)
...++..|-+++|||+.-
T Consensus 114 ~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 114 NYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HHHHHHHHHHTTCCEECS
T ss_pred HHHHHHHHHHhCCCeEcC
Confidence 457889999999999753
No 91
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=25.62 E-value=25 Score=24.58 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=27.1
Q ss_pred CchhHHHhHHHHHhhCCCCEEE-eC--ChhhHhhH--hCCCCceEEEEE
Q 035100 6 EPLEILLHLPLLAEDKNVPYVF-VP--SKQALGRA--CGVTRPVVACSV 49 (73)
Q Consensus 6 ~p~~~~~~l~~lc~~~~IP~~~-v~--sk~~LG~a--~G~~r~~~~vai 49 (73)
+|. +...+.++|++.||||-+ +. +-.+.|.+ .+...+++.+++
T Consensus 266 d~~-l~~~l~~~A~~~gIp~Q~~v~~ggGTDa~~i~~a~~Gipt~~Igv 313 (343)
T 3isx_A 266 SKR-ILENLIEIAEKFDIKYQMEVLTFGGTNAMGYQRTREGIPSATVSI 313 (343)
T ss_dssp HHH-HHHHHHHHHHHTTCCCEECCCBCCCSSHHHHHHHTSSCCEEEEEE
T ss_pred CHH-HHHHHHHHHHHCCCCeEEecCCCCchHHHHHHHhcCCCCEEEEcc
Confidence 445 889999999999999987 32 22333332 233345555555
No 92
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=24.99 E-value=40 Score=20.31 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHHhHHHHHhhCC-----CCEEEeCChhhHhhHhCCCCce
Q 035100 10 ILLHLPLLAEDKN-----VPYVFVPSKQALGRACGVTRPV 44 (73)
Q Consensus 10 ~~~~l~~lc~~~~-----IP~~~v~sk~~LG~a~G~~r~~ 44 (73)
+...+..+++.++ ..+..-.|..+|+..+|..|.+
T Consensus 123 l~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 162 (202)
T 2zcw_A 123 MAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRET 162 (202)
T ss_dssp HHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHH
Confidence 5566777777765 3456668999999999988643
No 93
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=24.95 E-value=44 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=24.9
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhh--HhhHh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQA--LGRAC 38 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~--LG~a~ 38 (73)
++.+. ....+..+.+..||||+..+.-++ +|.++
T Consensus 126 ~vt~~-~~~~~~~lL~~~gip~i~ap~EADa~iA~La 161 (340)
T 1b43_A 126 RVNEM-LIEDAKKLLELMGIPIVQAPSEGEAQAAYMA 161 (340)
T ss_dssp GGTHH-HHHHHHHHHHHHTCCEEECSSCHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCcEEEcChhHHHHHHHHH
Confidence 34444 778889999999999999985443 55544
No 94
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=24.68 E-value=97 Score=20.87 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=28.6
Q ss_pred hHHHHHhhCCCCEEEeCChhhHhhHhCCCCceEEEEEEeCC-chHHHHH
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVVACSVTSNE-ASQLKTQ 60 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r~~~~vai~~~~-~~~~~~~ 60 (73)
.+...|...++|+..+ +++.|-+..+...+-.++++.... ..++.+.
T Consensus 67 ~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~ 114 (277)
T 3nk6_A 67 ALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVPRPARLADI 114 (277)
T ss_dssp HHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECCCCCCHHHH
T ss_pred HHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecCCCCCHHHH
Confidence 4566778899999887 678888888765455567776654 3344433
No 95
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.39 E-value=1.6e+02 Score=19.50 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCChh--hHhhHhCCCCceEEEEEEeC-C-----chHHHHHHHHHHHHHHh
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPSKQ--ALGRACGVTRPVVACSVTSN-E-----ASQLKTQIQQLKDAIEK 70 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~--~LG~a~G~~r~~~~vai~~~-~-----~~~~~~~~~~~~~~~~~ 70 (73)
.+.+|. -+..+..++++++|+++++.+.. ++.+.+-.+.++.++. ++. + +.+|.+.|+..-+.+.+
T Consensus 208 ~eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~-l~~l~~~~~~~~~Y~~~m~~n~~~l~~ 281 (284)
T 3cx3_A 208 QEPSPR-QLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKT-LNPLESDPQNDKTYLENLEENMSILAE 281 (284)
T ss_dssp CCCCSH-HHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEE-CCCSSSCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEE-ecCcccCCCCcccHHHHHHHHHHHHHH
Confidence 356777 67889999999999999997543 3333333332332333 332 1 24677777776665543
No 96
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=29.84 E-value=16 Score=21.01 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.5
Q ss_pred HHHhHHHHHhhCCCCEEEeC
Q 035100 10 ILLHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~ 29 (73)
+-.++...++++|||+..-.
T Consensus 28 ~A~~I~e~A~e~~VPi~e~~ 47 (87)
T 3b1s_B 28 IAQKIVEIAENYSIPVVRKP 47 (87)
Confidence 56789999999999996543
No 97
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=23.76 E-value=68 Score=19.31 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=13.2
Q ss_pred CchhHHHhHHHHHhhCCCC
Q 035100 6 EPLEILLHLPLLAEDKNVP 24 (73)
Q Consensus 6 ~p~~~~~~l~~lc~~~~IP 24 (73)
.|...+..+...++++|+|
T Consensus 120 GP~~mm~~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 120 GPVGDQKQVFEVVKEYGVP 138 (158)
T ss_dssp SCHHHHHHHHHHHGGGTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4555667777777777777
No 98
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=23.65 E-value=40 Score=20.04 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=17.9
Q ss_pred HhHHHHHhhCCCCEEEeCChhhHhh
Q 035100 12 LHLPLLAEDKNVPYVFVPSKQALGR 36 (73)
Q Consensus 12 ~~l~~lc~~~~IP~~~v~sk~~LG~ 36 (73)
..+...+...++|++.+.+|.+|-.
T Consensus 109 ~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 109 EQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred HHHHHhcCCCCCCEEEEEeccCccc
Confidence 3444445556899999999998753
No 99
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=23.43 E-value=37 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.9
Q ss_pred chhHHHhHHHHHhhCCCCEEEeC
Q 035100 7 PLEILLHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 7 p~~~~~~l~~lc~~~~IP~~~v~ 29 (73)
|.+....+.++|+++|+.+++=.
T Consensus 245 ~~~fl~~lr~lc~~~gillI~DE 267 (456)
T 4atq_A 245 AEGFLPALSEWAKEKGIVFIADE 267 (456)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEC
T ss_pred chhhhHHHHHHHhhcCCceEecc
Confidence 34589999999999999988643
No 100
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=23.34 E-value=46 Score=19.59 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=17.3
Q ss_pred HhHHHHHhhCCCCEEEeCChhhHh
Q 035100 12 LHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 12 ~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
..+...+...++|++.+.+|.+|-
T Consensus 116 ~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 116 EQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp HHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHhCCCCCeEEEEEECCcCC
Confidence 344445555689999999998863
No 101
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=23.33 E-value=42 Score=19.52 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=17.7
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
...+.......++|++.+.+|.+|-
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCc
Confidence 3344444555789999999998863
No 102
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*
Probab=23.28 E-value=43 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=20.7
Q ss_pred CchhHHHhHHHHHhhCCCCEEEeCCh
Q 035100 6 EPLEILLHLPLLAEDKNVPYVFVPSK 31 (73)
Q Consensus 6 ~p~~~~~~l~~lc~~~~IP~~~v~sk 31 (73)
++. +...+..+|+++||||=+.-.+
T Consensus 405 ~~~-~~~~l~~ia~~~~Ip~Q~~v~r 429 (496)
T 3vat_A 405 NAV-SEALIREVASSVGVPLQDLMVR 429 (496)
T ss_dssp CHH-HHHHHHHHHHHHTCCCEEECCC
T ss_pred CHH-HHHHHHHHHHHcCCCEEEEEec
Confidence 444 8999999999999999876544
No 103
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=23.26 E-value=53 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=17.2
Q ss_pred HHHhHHHHHhhCCCCEEEeCCh
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSK 31 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk 31 (73)
=...+...|-.++|||..-..-
T Consensus 101 D~~~IrR~A~~~~IP~~T~lat 122 (152)
T 1b93_A 101 DVKALLRLATVWNIPVATNVAT 122 (152)
T ss_dssp HHHHHHHHHHHTTCCEESSHHH
T ss_pred cHHHHHHHHHHcCCCEEeCHHH
Confidence 3567999999999999765443
No 104
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=23.06 E-value=2.1e+02 Score=20.66 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=34.4
Q ss_pred hHHHHHhhCCCCEEEeCChhhHhhHhC----CCCce-EEEEEEeCC--chHHHHHHHHHH
Q 035100 13 HLPLLAEDKNVPYVFVPSKQALGRACG----VTRPV-VACSVTSNE--ASQLKTQIQQLK 65 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk~~LG~a~G----~~r~~-~~vai~~~~--~~~~~~~~~~~~ 65 (73)
.+..+++.+|+++..+.+.++|-.++. .+.+. ..-+.++.+ ...++++.+.++
T Consensus 498 d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~~~~~~~~~~~~~~~~~ 557 (565)
T 2nxw_A 498 RFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQK 557 (565)
T ss_dssp CHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEcccccCCHHHHHHHHHHH
Confidence 467899999999999999999876542 23445 333455554 344555544443
No 105
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.60 E-value=60 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCCh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSK 31 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk 31 (73)
+.+|. -+..+.+++++++|+++++.+.
T Consensus 195 eps~~-~l~~l~~~ik~~~v~~if~e~~ 221 (282)
T 3mfq_A 195 EVANS-DMIETVNLIIDHNIKAIFTEST 221 (282)
T ss_dssp CCCHH-HHHHHHHHHHHHTCCEEECBTT
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCC
Confidence 45666 7788999999999999998653
No 106
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=22.57 E-value=67 Score=21.65 Aligned_cols=22 Identities=5% Similarity=0.187 Sum_probs=19.2
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
+.+..+..+|.+.||+++.++.
T Consensus 46 ~~l~~iv~~c~~~GI~~lTlYa 67 (245)
T 2d2r_A 46 KTLKDITIWCANHKLECLTLYA 67 (245)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEe
Confidence 4678899999999999988876
No 107
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.52 E-value=47 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.5
Q ss_pred HhHHHHHhhCCCCEEEeC
Q 035100 12 LHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 12 ~~l~~lc~~~~IP~~~v~ 29 (73)
..+..+|+++|||+..++
T Consensus 88 ~~i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 88 QLVLTKAEERGVPVILTG 105 (139)
T ss_dssp HHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHHHCCCeEEEEC
Confidence 345588999999999877
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=22.50 E-value=99 Score=17.90 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHhHHHHHhhCCCCEEEeCChhhH
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQAL 34 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~L 34 (73)
...+..+....++|++.+.+|.+|
T Consensus 122 ~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 122 DLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp HHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCEEEEEEChhc
Confidence 345566777779999999999886
No 109
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=22.32 E-value=42 Score=19.03 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCC
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTR 42 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r 42 (73)
.|++..++...|..+=++.+ .|-.+|++.+|+++
T Consensus 11 ~d~~~~~~~~~IL~lL~~~g------~sa~eLAk~LgiSk 44 (82)
T 1oyi_A 11 DERSNAEIVCEAIKTIGIEG------ATAAQLTRQLNMEK 44 (82)
T ss_dssp --CCSHHHHHHHHHHHSSST------EEHHHHHHHSSSCH
T ss_pred cccchHHHHHHHHHHHHHcC------CCHHHHHHHHCcCH
Confidence 47777788888888888776 66789999999885
No 110
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=22.23 E-value=68 Score=21.75 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=18.9
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
+.+..+..+|.+.||+++.++.
T Consensus 48 ~~l~~iv~~c~~~GI~~lTlYa 69 (253)
T 3qas_B 48 KSVRRAVSFAANNGIEALTLYA 69 (253)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEEE
Confidence 3678899999999999988875
No 111
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=21.78 E-value=45 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=13.2
Q ss_pred CCCCEEEeCChhhHh
Q 035100 21 KNVPYVFVPSKQALG 35 (73)
Q Consensus 21 ~~IP~~~v~sk~~LG 35 (73)
.++|++.+.+|.+|-
T Consensus 108 ~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 108 HDLPVILVGNKSDLA 122 (169)
T ss_dssp SCCCEEEEEECTTCG
T ss_pred CCCCEEEEeeCcchh
Confidence 489999999999875
No 112
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.66 E-value=49 Score=15.53 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=12.5
Q ss_pred hhHHHhHHHHHhhCCCC
Q 035100 8 LEILLHLPLLAEDKNVP 24 (73)
Q Consensus 8 ~~~~~~l~~lc~~~~IP 24 (73)
.++...+..+|+..|++
T Consensus 11 ~~l~~~Ld~~a~~~g~s 27 (45)
T 2cpg_A 11 ESVLENLEKMAREMGLS 27 (45)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 35788888888887753
No 113
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=21.39 E-value=61 Score=18.91 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.1
Q ss_pred CCCchhHHHhHHHHHhhCCCCE
Q 035100 4 DTEPLEILLHLPLLAEDKNVPY 25 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~ 25 (73)
+++|. ++.++..+|+..|++-
T Consensus 117 ~l~~e-~~~~f~~~~~~~G~~~ 137 (151)
T 1e5p_A 117 ALTPE-ENEILVQFAHEKKIPV 137 (151)
T ss_dssp CCCHH-HHHHHHHHHHHTTCCG
T ss_pred CCCHH-HHHHHHHHHHHcCCCH
Confidence 45666 9999999999999986
No 114
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=21.39 E-value=43 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.3
Q ss_pred HHhHHHHHhhCCCCEEEeCCh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSK 31 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk 31 (73)
...+...|-.++|||..-..-
T Consensus 94 ~~~IrR~A~~~~IP~~T~lat 114 (134)
T 2xw6_A 94 VQALLRVCDVHGVPLATNPMA 114 (134)
T ss_dssp SHHHHHHHHHHTCCEECSHHH
T ss_pred HHHHHHHHHHcCCCeEcCHHH
Confidence 456899999999999765443
No 115
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=21.17 E-value=86 Score=20.71 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHhHHHHHhhCCCCEEEeCChhhHhhHhCCC
Q 035100 10 ILLHLPLLAEDKNVPYVFVPSKQALGRACGVT 41 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~ 41 (73)
+...+..+|+++++|++. .+..+|-.++|-+
T Consensus 84 ~a~~l~~l~~~~~~~liI-nd~~~lA~~~gAd 114 (243)
T 3o63_A 84 ACEILADAAHRYGALFAV-NDRADIARAAGAD 114 (243)
T ss_dssp HHHHHHHHHHHTTCEEEE-ESCHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCEEEE-eCHHHHHHHhCCC
Confidence 347789999999999655 5566777666644
No 116
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=21.12 E-value=37 Score=21.34 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=12.8
Q ss_pred hHHHHHhhCCCCEEE
Q 035100 13 HLPLLAEDKNVPYVF 27 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~ 27 (73)
-+-++|+++|+++++
T Consensus 97 tya~Wc~k~g~~~~~ 111 (138)
T 1m0d_A 97 SYGEFCEKHGIKFAD 111 (138)
T ss_dssp BHHHHHHHHTCCEEE
T ss_pred cHHHHHHHcCCceec
Confidence 467899999999984
No 117
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=21.07 E-value=1.9e+02 Score=19.16 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=18.2
Q ss_pred HHhhCCCCEEEeCCh---------hhHhhHhCCC
Q 035100 17 LAEDKNVPYVFVPSK---------QALGRACGVT 41 (73)
Q Consensus 17 lc~~~~IP~~~v~sk---------~~LG~a~G~~ 41 (73)
.-++.|+|++.+... ..||+++|++
T Consensus 132 ~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 132 TLESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 346678999998642 4588998865
No 118
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=21.02 E-value=76 Score=18.33 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.9
Q ss_pred CCCCchhHHHhHHHHHhhCCCCEE
Q 035100 3 ADTEPLEILLHLPLLAEDKNVPYV 26 (73)
Q Consensus 3 ~D~~p~~~~~~l~~lc~~~~IP~~ 26 (73)
.|.+|..++..+..|-..+|-|.+
T Consensus 61 ~edsPEgIv~~iKeWRa~nG~pgF 84 (87)
T 1unk_A 61 RDDSPEGIVKEIKEWRAANGKPGF 84 (87)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCccc
Confidence 477888899999999999999864
No 119
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.97 E-value=74 Score=21.42 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=38.0
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCCh------hhHhhHhCCCCceEEEE-EEe-C------CchHHHHHHHHHHHHHH
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSK------QALGRACGVTRPVVACS-VTS-N------EASQLKTQIQQLKDAIE 69 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk------~~LG~a~G~~r~~~~va-i~~-~------~~~~~~~~~~~~~~~~~ 69 (73)
+.+|. -+..+.+++++++|+++++.+. +.|.+..|.+ +++ +.+ . ++.+|.+.|+..-+.+.
T Consensus 215 eps~~-~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~----v~~~~~~~~l~~~~~~~~~Y~~~m~~n~~~l~ 289 (294)
T 3hh8_A 215 EGTPD-QISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIP----IYSEIFTDSIAKKGKPGDSYYAMMKWNLDKIS 289 (294)
T ss_dssp CCCHH-HHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCC----EEEEECSSSCCCTTSTTCSHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCc----EEeeecCcccCCCCCCcccHHHHHHHHHHHHH
Confidence 45666 7788999999999999998653 2355555544 221 222 1 13467777766555443
No 120
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=20.92 E-value=1.3e+02 Score=17.31 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHhHHHHHhh-----CCCCEEEeCChhhHh
Q 035100 10 ILLHLPLLAED-----KNVPYVFVPSKQALG 35 (73)
Q Consensus 10 ~~~~l~~lc~~-----~~IP~~~v~sk~~LG 35 (73)
....+..+..+ .++|++.+.+|.+|-
T Consensus 118 s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 118 SMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred HHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 34444444443 689999999998864
No 121
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=20.72 E-value=76 Score=21.62 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=17.7
Q ss_pred HHHhHHHHHhhCCCCEEEeC
Q 035100 10 ILLHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~ 29 (73)
.+..+..+|.+.||+++.++
T Consensus 49 ~l~~i~~~c~~lGI~~lTlY 68 (253)
T 3sgv_B 49 SVRRAVSFAANNGIEALTLY 68 (253)
T ss_dssp HHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 67788999999999998876
No 122
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.71 E-value=55 Score=20.38 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=24.7
Q ss_pred hHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTR 42 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~r 42 (73)
++...+....+++|.| +|-.+|++++|.+.
T Consensus 9 ~il~~I~~~~~~~g~~----~s~~eia~~lgl~~ 38 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYP----PSVREIARRFRITP 38 (196)
T ss_dssp HHHHHHHHHHHHHSSC----CCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHhCCC----CCHHHHHHHcCCCc
Confidence 4677778888888888 78999999999884
No 123
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.69 E-value=86 Score=17.38 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=18.2
Q ss_pred hHHHHHhhCCCCEEEeCCh------hhHhhHhCCC
Q 035100 13 HLPLLAEDKNVPYVFVPSK------QALGRACGVT 41 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~sk------~~LG~a~G~~ 41 (73)
....+-+++||+|..+.=- ++|-+..|..
T Consensus 35 ~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~ 69 (109)
T 1wik_A 35 QILEILNSTGVEYETFDILEDEEVRQGLKTFSNWP 69 (109)
T ss_dssp HHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCC
Confidence 4455667789998777532 3566666643
No 124
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=20.56 E-value=63 Score=20.94 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHhHHHHHhhCCCCEEEeCChhh
Q 035100 11 LLHLPLLAEDKNVPYVFVPSKQA 33 (73)
Q Consensus 11 ~~~l~~lc~~~~IP~~~v~sk~~ 33 (73)
...|...|-.++|||..-..-++
T Consensus 118 ~~~IRR~A~~~~IP~~TnlatA~ 140 (178)
T 1vmd_A 118 VKALIRIATVYNIPVAITRSTAD 140 (178)
T ss_dssp HHHHHHHHHHTTCCEESSHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHHH
Confidence 45789999999999976544433
No 125
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=20.52 E-value=80 Score=19.46 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=24.0
Q ss_pred hHHHhHHHHHhhCCCCEEEeCChhhHhhHhCCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVT 41 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~sk~~LG~a~G~~ 41 (73)
++...+..+.+++|.| +|..+|++.+|.+
T Consensus 10 ~i~~~i~~~~~~~g~~----ps~~elA~~lgis 38 (202)
T 1jhf_A 10 EVFDLIRDHISQTGMP----PTRAEIAQRLGFR 38 (202)
T ss_dssp HHHHHHHHHHHHHSSC----CCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhCCC----ccHHHHHHHhCCC
Confidence 3667788888888886 5899999999976
No 126
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=20.48 E-value=92 Score=17.20 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=11.3
Q ss_pred hHHHHHhhCCCCEEEeC
Q 035100 13 HLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~ 29 (73)
....+-+++||||..+.
T Consensus 31 ~ak~~L~~~~i~y~~id 47 (99)
T 3qmx_A 31 RALALLKRKGVEFQEYC 47 (99)
T ss_dssp HHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHCCCCCEEEE
Confidence 34455667788887764
No 127
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=20.48 E-value=60 Score=21.51 Aligned_cols=22 Identities=5% Similarity=-0.001 Sum_probs=19.1
Q ss_pred hHHHhHHHHHhhCCCCEEEeCC
Q 035100 9 EILLHLPLLAEDKNVPYVFVPS 30 (73)
Q Consensus 9 ~~~~~l~~lc~~~~IP~~~v~s 30 (73)
+.+..+..+|.+.||+++.++.
T Consensus 34 ~~l~~i~~~c~~~GI~~lTlYa 55 (227)
T 2vg0_A 34 AKIAEMLRWCHEAGIELATVYL 55 (227)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEe
Confidence 3678899999999999998876
No 128
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=20.24 E-value=84 Score=17.20 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=11.1
Q ss_pred hHHHHHhhCCCCEEEeC
Q 035100 13 HLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 13 ~l~~lc~~~~IP~~~v~ 29 (73)
.+..+.++++|+|..+.
T Consensus 37 ~~~~~L~~~~i~~~~vd 53 (105)
T 2yan_A 37 QILEILNSTGVEYETFD 53 (105)
T ss_dssp HHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHCCCCeEEEE
Confidence 34455566788887664
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=20.22 E-value=92 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCCchhHHHhHHHHHhhCCCCEEEeCChhhHh
Q 035100 4 DTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 35 (73)
Q Consensus 4 D~~p~~~~~~l~~lc~~~~IP~~~v~sk~~LG 35 (73)
|++..+....+..+..+.++|++.+.+|.+|-
T Consensus 122 D~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 122 DSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp SSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred eCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 33344455667777788899999999998864
No 130
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=20.07 E-value=81 Score=21.12 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=16.9
Q ss_pred HHHhHHHHHhhCCCCEEEeC
Q 035100 10 ILLHLPLLAEDKNVPYVFVP 29 (73)
Q Consensus 10 ~~~~l~~lc~~~~IP~~~v~ 29 (73)
.+..+..+|.+.||+++.++
T Consensus 38 ~~~~i~~~c~~lGI~~lTlY 57 (225)
T 3ugs_B 38 TMQKLMEVCMEENISNLSLF 57 (225)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 67788999999999997654
No 131
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=20.06 E-value=1e+02 Score=17.89 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=11.2
Q ss_pred hHHHHHhhCCCC-EEEeC
Q 035100 13 HLPLLAEDKNVP-YVFVP 29 (73)
Q Consensus 13 ~l~~lc~~~~IP-~~~v~ 29 (73)
+...+-+++||| |..+.
T Consensus 40 ~ak~lL~~~gv~~~~~vd 57 (118)
T 2wem_A 40 AVVQILRLHGVRDYAAYN 57 (118)
T ss_dssp HHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHcCCCCCEEEE
Confidence 455666778896 66654
Done!