Query 035101
Match_columns 73
No_of_seqs 81 out of 83
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 99.4 5.5E-14 1.9E-18 110.0 4.6 60 12-73 520-579 (608)
2 3zvr_A Dynamin-1; hydrolase, D 99.4 1.1E-13 3.7E-18 113.3 5.7 58 14-73 681-738 (772)
3 3ljb_A Interferon-induced GTP- 99.2 1.2E-11 4.2E-16 91.1 6.4 65 7-73 203-268 (271)
4 1pq1_B BCL2-like protein 11; B 59.9 6.5 0.00022 20.9 2.2 14 10-23 10-23 (33)
5 3rob_A Uncharacterized conserv 59.1 8.5 0.00029 24.2 3.0 31 43-73 15-45 (139)
6 3fgy_A Uncharacterized NTF2-li 59.0 8.8 0.0003 22.5 2.9 28 46-73 6-33 (135)
7 3dmc_A NTF2-like protein; stru 58.8 6.5 0.00022 24.2 2.4 30 44-73 11-40 (134)
8 3en8_A Uncharacterized NTF-2 l 58.5 6.7 0.00023 24.0 2.4 29 45-73 5-33 (128)
9 1ohp_A Steroid delta-isomerase 55.8 11 0.00038 21.1 2.9 29 45-73 5-33 (125)
10 1oh0_A Steroid delta-isomerase 55.4 13 0.00043 21.5 3.2 28 46-73 8-35 (131)
11 3f40_A Uncharacterized NTF2-li 53.8 9.1 0.00031 23.0 2.4 29 45-73 6-34 (114)
12 1tuh_A BAL32A, hypothetical pr 53.0 11 0.00038 23.0 2.8 49 24-73 9-57 (156)
13 1nww_A Limonene-1,2-epoxide hy 52.8 13 0.00045 22.2 3.0 28 46-73 23-50 (149)
14 3kj0_B BCL-2-like protein 11; 52.7 11 0.00036 19.3 2.2 14 10-23 12-25 (27)
15 2bng_A MB2760; epoxide hydrola 52.7 13 0.00044 22.5 3.0 28 46-73 16-43 (149)
16 3g8z_A Protein of unknown func 51.3 9 0.00031 23.6 2.2 30 44-73 19-48 (148)
17 3r9m_A BRO1 domain-containing 50.2 70 0.0024 23.4 7.2 57 8-64 207-267 (376)
18 3fh1_A Uncharacterized NTF2-li 49.7 8.8 0.0003 22.8 1.9 29 45-73 17-45 (129)
19 3hx8_A MLR2180 protein, putati 48.6 17 0.0006 20.6 3.0 30 44-73 5-34 (129)
20 3ec9_A Uncharacterized NTF2-li 48.2 9.3 0.00032 22.7 1.8 27 47-73 14-40 (140)
21 3i0y_A Putative polyketide cyc 46.7 17 0.00059 21.3 2.8 27 47-73 10-36 (140)
22 3ebt_A Uncharacterized NTF2-li 45.4 14 0.00049 21.4 2.3 27 47-73 5-31 (132)
23 3dm8_A Uncharacterized protein 43.6 12 0.00041 22.8 1.8 28 46-73 5-32 (143)
24 1z1s_A Hypothetical protein PA 42.3 17 0.00058 22.6 2.4 28 46-73 24-51 (163)
25 1s5a_A Hypothetical protein YE 42.3 22 0.00075 21.0 2.8 28 46-73 11-38 (150)
26 3h3h_A Uncharacterized snoal-l 41.2 24 0.00081 20.6 2.8 28 46-73 9-36 (122)
27 3f7x_A Putative polyketide cyc 40.1 20 0.00068 22.2 2.5 28 46-73 21-48 (151)
28 2r4i_A Uncharacterized protein 35.9 33 0.0011 19.3 2.8 26 48-73 9-34 (123)
29 3bb9_A Putative orphan protein 35.6 25 0.00085 21.3 2.4 30 44-73 29-58 (148)
30 3d9r_A Ketosteroid isomerase-l 34.6 39 0.0013 19.3 3.0 26 48-73 14-39 (135)
31 3c3r_A Programmed cell death 6 33.8 54 0.0019 24.0 4.3 55 9-63 231-288 (380)
32 3u2r_A Regulatory protein MARR 33.6 82 0.0028 19.2 4.6 30 42-71 118-147 (168)
33 3mso_A Steroid delta-isomerase 33.3 12 0.0004 23.5 0.6 29 45-73 9-37 (143)
34 2wh6_B BCL-2-like protein 11; 32.7 12 0.00042 18.9 0.5 14 10-23 10-23 (26)
35 2c5k_P Vacuolar protein sortin 32.4 39 0.0013 17.0 2.4 14 43-56 8-21 (26)
36 1z67_A Hypothetical protein S4 31.1 46 0.0016 22.1 3.2 37 4-40 62-106 (135)
37 2g9w_A Conserved hypothetical 30.6 45 0.0015 20.4 3.0 25 47-71 96-120 (138)
38 3nhm_A Response regulator; pro 30.6 32 0.0011 19.3 2.1 21 2-22 103-123 (133)
39 3f8x_A Putative delta-5-3-keto 30.2 16 0.00056 23.4 0.9 31 43-73 18-48 (148)
40 3fsd_A NTF2-like protein of un 29.9 39 0.0013 20.2 2.6 29 45-73 14-42 (134)
41 3rau_A Tyrosine-protein phosph 29.8 1.6E+02 0.0055 21.4 6.9 59 8-66 201-268 (363)
42 1puz_A Conserved hypothetical 29.0 34 0.0012 20.5 2.1 23 51-73 31-53 (82)
43 1k68_A Phytochrome response re 28.4 40 0.0014 18.8 2.3 22 2-23 112-133 (140)
44 3grd_A Uncharacterized NTF2-su 28.2 6 0.0002 23.3 -1.4 28 46-73 5-32 (134)
45 3g16_A Uncharacterized protein 27.6 47 0.0016 21.8 2.8 29 45-73 10-38 (156)
46 2gex_A SNOL; alpha+beta barrel 27.5 48 0.0016 20.0 2.7 28 46-73 5-32 (152)
47 2p62_A Hypothetical protein PH 27.2 86 0.0029 22.9 4.3 29 14-42 164-193 (241)
48 2fbi_A Probable transcriptiona 26.6 97 0.0033 17.8 4.3 29 43-71 107-135 (142)
49 1f8p_A Neuropeptide Y (PNPY); 26.4 50 0.0017 17.8 2.3 18 10-27 15-32 (37)
50 3grc_A Sensor protein, kinase; 25.9 48 0.0017 18.8 2.4 21 2-22 108-128 (140)
51 2ux0_A Calcium-calmodulin depe 25.6 85 0.0029 18.4 3.5 29 45-73 13-41 (143)
52 3i42_A Response regulator rece 24.5 28 0.00097 19.5 1.1 21 2-22 103-123 (127)
53 1k66_A Phytochrome response re 24.4 51 0.0018 18.6 2.3 22 2-23 119-140 (149)
54 3hdg_A Uncharacterized protein 23.0 67 0.0023 18.1 2.6 21 2-22 106-126 (137)
55 1l2j_A Estrogen receptor beta; 22.8 1.8E+02 0.0062 19.8 5.2 9 62-70 217-225 (271)
56 3h51_A Putative calcium/calmod 22.7 74 0.0025 19.3 2.9 27 47-73 22-48 (156)
57 2xs1_A Programmed cell death 6 22.6 1.2E+02 0.004 24.1 4.7 54 9-62 216-272 (704)
58 2f99_A Aklanonic acid methyl e 22.3 14 0.00049 22.6 -0.5 31 43-73 9-39 (153)
59 3n53_A Response regulator rece 22.2 56 0.0019 18.6 2.1 21 2-22 103-123 (140)
60 2a61_A Transcriptional regulat 22.0 1.3E+02 0.0043 17.5 4.3 28 44-71 105-132 (145)
61 2a15_A Hypothetical protein RV 21.7 70 0.0024 18.6 2.5 28 46-73 8-35 (139)
62 3hnw_A Uncharacterized protein 21.6 1.7E+02 0.0059 18.9 5.5 38 7-44 25-65 (138)
63 3h5i_A Response regulator/sens 21.6 57 0.0019 18.7 2.1 21 2-22 105-125 (140)
64 3f7s_A Uncharacterized NTF2-li 21.5 81 0.0028 18.5 2.8 29 45-73 8-36 (142)
65 1sd4_A Penicillinase repressor 21.4 44 0.0015 19.5 1.6 24 48-71 96-121 (126)
66 4h62_V Mediator of RNA polymer 21.4 38 0.0013 17.5 1.1 14 59-72 7-20 (31)
67 3flj_A Uncharacterized protein 21.3 47 0.0016 21.8 1.9 25 49-73 22-46 (155)
68 2lm4_A Succinate dehydrogenase 21.3 57 0.002 20.8 2.2 23 51-73 46-68 (109)
69 3g3z_A NMB1585, transcriptiona 20.4 1.4E+02 0.0048 17.4 4.3 26 46-71 105-130 (145)
70 2qv0_A Protein MRKE; structura 20.4 64 0.0022 18.3 2.1 20 2-21 108-127 (143)
71 3cg0_A Response regulator rece 20.3 58 0.002 18.3 1.9 21 2-22 109-129 (140)
72 3dwl_F Actin-related protein 2 20.3 43 0.0015 23.4 1.5 20 15-34 1-20 (168)
73 3kto_A Response regulator rece 20.3 62 0.0021 18.4 2.1 21 2-22 107-127 (136)
74 1yye_A ER-beta, estrogen recep 20.2 2.1E+02 0.0073 19.4 5.2 8 63-70 190-197 (268)
75 1jgs_A Multiple antibiotic res 20.1 1.1E+02 0.0039 17.6 3.2 28 44-71 106-134 (138)
76 3cg4_A Response regulator rece 20.1 66 0.0023 18.2 2.1 20 2-21 108-127 (142)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=5.5e-14 Score=110.01 Aligned_cols=60 Identities=15% Similarity=0.265 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 12 LRWISQKVSGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 12 lr~i~~~V~sYv~~V~~tL~~sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.|...|.||+++|+++++|+|||||+||+|+.+++.|++.+++.|++++. +++||+||
T Consensus 520 ~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~--~~~ll~E~ 579 (608)
T 3szr_A 520 MEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDT--YSWLLKER 579 (608)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHH--HHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHhCCC
Confidence 4569999999999999999999999999999999999999999999998777 99999997
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.43 E-value=1.1e-13 Score=113.29 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 14 WISQKVSGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 14 ~i~~~V~sYv~~V~~tL~~sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-|..+|.||++||+++++|.|||||||++||.+|+.+.+.|.++||+.+. +.+||+|+
T Consensus 681 ~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~--~~~lm~Es 738 (772)
T 3zvr_A 681 TIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGD--QNTLMEES 738 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCC--TTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHhcC
Confidence 58999999999999999999999999999999999999999999999988 88999985
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=91.10 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 7 DPE-EELRWISQKVSGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 7 ~~d-~~lr~i~~~V~sYv~~V~~tL~~sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
|+. +-++-|...+.||+++|+++|+|.|||+|+|++|+.++..|+..++..|+.++. +..||.||
T Consensus 203 ~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~--~~~LL~E~ 268 (271)
T 3ljb_A 203 SATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDT--YSWLLKER 268 (271)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGG--HHHHTCCC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhh--HHHHhcCC
Confidence 344 668889999999999999999999999999999999999999999999999998 99999997
No 4
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=59.88 E-value=6.5 Score=20.94 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 035101 10 EELRWISQKVSGYV 23 (73)
Q Consensus 10 ~~lr~i~~~V~sYv 23 (73)
.+|||||.+..+|+
T Consensus 10 QELRRIGDeFNa~y 23 (33)
T 1pq1_B 10 QELRRIGDEFNETY 23 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhccc
Confidence 47999999999886
No 5
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=59.15 E-value=8.5 Score=24.22 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 43 VEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 43 V~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-+.+-+.|++.|+..+...+.+.+.+|+.||
T Consensus 15 de~aI~~l~~~~~~A~~~gD~~~l~al~a~D 45 (139)
T 3rob_A 15 DELAIRTVQYRWLEATRKFDRQVLSSLMTDD 45 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHccCc
Confidence 3677889999999999999999999998876
No 6
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=59.03 E-value=8.8 Score=22.52 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.+...||..+...+.+.+.+++.+|
T Consensus 6 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D 33 (135)
T 3fgy_A 6 ENVQIVKDFFAAMGRGDKKGLLAVSAED 33 (135)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEE
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 4567889999999999998899988775
No 7
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=58.79 E-value=6.5 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++.-+.+.+.|+..+...+...+.+||.||
T Consensus 11 ~~~~~~~~~~f~~A~~~gD~~~l~~lla~D 40 (134)
T 3dmc_A 11 LKVAHQGFEFFTQGLATGEWQKFLDMLTED 40 (134)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHcCCC
Confidence 345567899999999999998999999886
No 8
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=58.48 E-value=6.7 Score=23.97 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+..+.++..||..+.+.....+.+||.||
T Consensus 5 ~~~~~~v~~~~~a~~~~D~~~l~~llaeD 33 (128)
T 3en8_A 5 EKIREALNAHWQASAAGDFDAEHDIYDDD 33 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34568899999999999999999999876
No 9
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=55.83 E-value=11 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++-+.+...|+..+...+...+.+++.||
T Consensus 5 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D 33 (125)
T 1ohp_A 5 EHMTAVVQRYVAALNAGDLDGIVALFADD 33 (125)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 34567788899999888888888888765
No 10
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=55.43 E-value=13 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+-+.+...|+..+...+...+.+|+.||
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D 35 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADD 35 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 4456788888888888888888888775
No 11
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=53.84 E-value=9.1 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
...+.+.+.||..+.......+.+||.+|
T Consensus 6 ~~~~~~v~~f~~A~~~gD~~~l~~lla~D 34 (114)
T 3f40_A 6 ITTRDLVLEFIHALNTENFPAAKKRLNEN 34 (114)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34578899999999999999999999876
No 12
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=52.98 E-value=11 Score=23.02 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 24 EAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 24 ~~V~~tL~~sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+||.... .-|+..-.-|-.+..+.+...||..+...+.+.+.+++.||
T Consensus 9 ~~~~~~~~-~~~~~~~~~m~~~~~~~~v~~~~~a~~~gD~~~l~~l~a~D 57 (156)
T 1tuh_A 9 GIVTGPII-DHSKENDVMNEAEQNAETVRRGYAAFNSGDMKTLTELFDEN 57 (156)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred ceeeccee-ecchhhhccCCcchHHHHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 44544332 22333333344456678899999999999999999998876
No 13
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=52.81 E-value=13 Score=22.20 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.+.+...||..+...+.+.+.+++.||
T Consensus 23 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D 50 (149)
T 1nww_A 23 PDEKIVLEFMDALTSNDAAKLIEYFAED 50 (149)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHTTBCSS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCCC
Confidence 3456788999999999998999999886
No 14
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=52.74 E-value=11 Score=19.27 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 035101 10 EELRWISQKVSGYV 23 (73)
Q Consensus 10 ~~lr~i~~~V~sYv 23 (73)
.+|||||.+...|+
T Consensus 12 qELRRIGDeFN~~y 25 (27)
T 3kj0_B 12 QELRRIGDEFNAYY 25 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 37999999988776
No 15
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=52.69 E-value=13 Score=22.53 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.+...||..+...+...+.+++.||
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D 43 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDD 43 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCC
Confidence 4566788999999999998899998876
No 16
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=51.31 E-value=9 Score=23.60 Aligned_cols=30 Identities=10% Similarity=0.239 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+..+.+...||..+...+...+.+|+.||
T Consensus 19 ~~~n~~~v~~~~~a~~~gD~~~l~~l~a~D 48 (148)
T 3g8z_A 19 GMNTIDIAKSYITAIQTGDHATLGSIISPD 48 (148)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHcCCC
Confidence 345678899999999999999999998876
No 17
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=50.24 E-value=70 Score=23.40 Aligned_cols=57 Identities=4% Similarity=0.016 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH-HHHHHHhHHHHHHHHHHHHHhhhcHH
Q 035101 8 PEEELRWISQKVSGYVEAVLNSLAA---NVPKAI-VLCQVEKAKEDMLNQLYSSVNAQSTA 64 (73)
Q Consensus 8 ~d~~lr~i~~~V~sYv~~V~~tL~~---sVPKAi-VhcqV~~aKr~Ll~~l~~~l~~~e~~ 64 (73)
.++-+.+++..+..|++.+.+.+.. .||+.+ -|+++...=-.-+-++|..+.-.+.+
T Consensus 207 k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~ 267 (376)
T 3r9m_A 207 APGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASD 267 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567899999999999999998875 577776 56777665555566666666554443
No 18
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=49.69 E-value=8.8 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+..+.++..||..+.......+.+|+.+|
T Consensus 17 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D 45 (129)
T 3fh1_A 17 EQTAEIMRRFNDVFQLHDPAALPELIAEE 45 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHEEEE
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHhcCCC
Confidence 34567889999988888888888888775
No 19
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=48.56 E-value=17 Score=20.62 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+++=+.++..|+..+...+...+.+|+.||
T Consensus 5 ~~~I~~~~~~~~~a~~~~D~~~~~~l~a~D 34 (129)
T 3hx8_A 5 KEAIEAANADFVKAYNSKDAAGVASKYMDD 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence 445578889999999999998888887765
No 20
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=48.17 E-value=9.3 Score=22.71 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.+...||..+...+...+.+++.||
T Consensus 14 ~~~~v~~~~~a~~~gD~~~~~~l~a~D 40 (140)
T 3ec9_A 14 PYQIVADHYAASDRHDPAAMMADIAPA 40 (140)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 356788999999999998899988876
No 21
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=46.70 E-value=17 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.+...||..+...+...+.+++.+|
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D 36 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAED 36 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCc
Confidence 457788999999999998899888775
No 22
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=45.44 E-value=14 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.+...||..+...+...+.+++.+|
T Consensus 5 ~~~~v~~~~~a~~~~d~~~~~~l~a~D 31 (132)
T 3ebt_A 5 NMQTVRESYEAFHRRDLPGVLAALAPD 31 (132)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhccCHHHHHHhcCCC
Confidence 456788899999999998898888775
No 23
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=43.62 E-value=12 Score=22.81 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.-+.+...||..+.+.+...+.+++.||
T Consensus 5 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D 32 (143)
T 3dm8_A 5 SLWRFSRALHRALNDRQTEELATIIDDN 32 (143)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHEEEE
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHhcCCC
Confidence 4567899999999999998899998876
No 24
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=42.32 E-value=17 Score=22.59 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.++..||..+.+.+...+.+|+.||
T Consensus 24 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D 51 (163)
T 1z1s_A 24 NAKEILVHSLRLLENGDARGWCDLFHPE 51 (163)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHCCCC
Confidence 3466789999999999998999998876
No 25
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=42.29 E-value=22 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.+.+...||..+...+...+.+++.||
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D 38 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDEN 38 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCC
Confidence 4567888999999999998898888775
No 26
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=41.16 E-value=24 Score=20.63 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.-+.+++.+|..+...+...+.+++.||
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D 36 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADG 36 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCC
Confidence 3457788999999999998888888775
No 27
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=40.15 E-value=20 Score=22.17 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+-+.+...||..+...+.+.+.+++.+|
T Consensus 21 ~~~~lv~~~~~a~~~~D~~~l~~l~a~D 48 (151)
T 3f7x_A 21 TATELVNAYYAAFNAGDMPAFLALLSED 48 (151)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 3457789999999999998899998876
No 28
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=35.86 E-value=33 Score=19.34 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.+.|+..+.+.+.+.|.+|+.+|
T Consensus 9 ~~l~~~~~~A~~~~D~~~l~~l~~~d 34 (123)
T 2r4i_A 9 LDCEKKLLTAIQNNDVESLEVLLHDD 34 (123)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCcC
Confidence 46778888899999999999998765
No 29
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=35.58 E-value=25 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.++=+.+++.++..+...+.+.+.+++.+|
T Consensus 29 ~~~i~~~~~~~~~A~~~~D~~~l~~l~a~D 58 (148)
T 3bb9_A 29 DSAAGNVVKQFHAALQMGNEAIVRQSLAAN 58 (148)
T ss_dssp TSHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCC
Confidence 346678999999999999999998887765
No 30
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=34.64 E-value=39 Score=19.28 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.++..|+..+.....+.+.+|+.||
T Consensus 14 ~~~~~~~~~a~~~~D~~~~~~l~a~D 39 (135)
T 3d9r_A 14 EAAAIAYLTAFNRADIPAVIATYTDD 39 (135)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 46677788888888877777777665
No 31
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=33.83 E-value=54 Score=24.04 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HhHHHHH-HHHHHHhHHHHHHHHHHHHHhhhcH
Q 035101 9 EEELRWISQKVSGYVEAVLNSLA--ANVPKAI-VLCQVEKAKEDMLNQLYSSVNAQST 63 (73)
Q Consensus 9 d~~lr~i~~~V~sYv~~V~~tL~--~sVPKAi-VhcqV~~aKr~Ll~~l~~~l~~~e~ 63 (73)
++-+.+++..+..|++.+.+.+. +.+||.+ -|+++...--.-+-++|..+...+.
T Consensus 231 ~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~ 288 (380)
T 3c3r_A 231 DAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQ 288 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788999999999999999997 5677766 4566655444445555555544433
No 32
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.58 E-value=82 Score=19.18 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=21.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 42 QVEKAKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 42 qV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
.+...-..+.+.++..++..|.++|.++|+
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 147 (168)
T 3u2r_A 118 DLEEPVRQCHERQLGHLAADELHELIRLME 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344455566777888888888888877764
No 33
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=33.27 E-value=12 Score=23.48 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+-+.++..||+.+...+...|.+|+.||
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D 37 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPD 37 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 34567899999999998888888888876
No 34
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=32.70 E-value=12 Score=18.89 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 035101 10 EELRWISQKVSGYV 23 (73)
Q Consensus 10 ~~lr~i~~~V~sYv 23 (73)
.+|||||.+..+|+
T Consensus 10 qELRRIGDeFN~~y 23 (26)
T 2wh6_B 10 QELRRIGDEFNAYY 23 (26)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHhhhc
Confidence 37999998877654
No 35
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=32.36 E-value=39 Score=17.03 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHH
Q 035101 43 VEKAKEDMLNQLYS 56 (73)
Q Consensus 43 V~~aKr~Ll~~l~~ 56 (73)
+++-||.+|..||.
T Consensus 8 ~~KdKR~lLkeyY~ 21 (26)
T 2c5k_P 8 LNKDRRLLLREFYN 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHh
Confidence 46778999999985
No 36
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=31.14 E-value=46 Score=22.09 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=27.1
Q ss_pred ccCCChH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035101 4 RLADPEE--------ELRWISQKVSGYVEAVLNSLAANVPKAIVL 40 (73)
Q Consensus 4 ~~~~~d~--------~lr~i~~~V~sYv~~V~~tL~~sVPKAiVh 40 (73)
.|++||. -+.++++..--=-+.+...|+..+|++|=+
T Consensus 62 ~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~LP~~VD~ 106 (135)
T 1z67_A 62 QSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDA 106 (135)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhc
Confidence 5677665 456666666666678889999999998855
No 37
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=30.62 E-value=45 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
-..+.++|+..+...|.++|.++|+
T Consensus 96 ~~~~~~~~~~~ls~eE~~~L~~lL~ 120 (138)
T 2g9w_A 96 RQAALVHFVERVGADEADALRRALA 120 (138)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3467788888899999988888875
No 38
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.60 E-value=32 Score=19.33 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=16.8
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-+..|...+..+
T Consensus 103 l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 103 LVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EESSCCHHHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHHHhhh
Confidence 568999999888888777654
No 39
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=30.23 E-value=16 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 43 VEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 43 V~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+++-+.+++.|++.+.......|.+||.||
T Consensus 18 ~~~~~~~~l~~f~~a~~~gD~~aL~~LlA~D 48 (148)
T 3f8x_A 18 PNAAVQSGLQEWHRIIAEADWERLPDLLAED 48 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTCGGGSGGGEEEE
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHhCCC
Confidence 3456678899999999999998899998876
No 40
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=29.95 E-value=39 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.=..+.+.|+..+...+.+.|.+|+.+|
T Consensus 14 ~~I~~l~~~~~~A~~~~D~~~l~~L~~~d 42 (134)
T 3fsd_A 14 DDIAFYEERLRAAMLTGDLKGLETLLADD 42 (134)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhcCCC
Confidence 33457788899999999999999998765
No 41
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=29.80 E-value=1.6e+02 Score=21.42 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHH-HHHHHhHHHHHHHHHHHHHhhhcHHHH
Q 035101 8 PEEELRWISQKVSGYVEAVLNSLAA--------NVPKAIV-LCQVEKAKEDMLNQLYSSVNAQSTAMI 66 (73)
Q Consensus 8 ~d~~lr~i~~~V~sYv~~V~~tL~~--------sVPKAiV-hcqV~~aKr~Ll~~l~~~l~~~e~~ql 66 (73)
.++-+.+++..+..|++-+.+.+.. .+|+.+. |+++...--.=+-++|..+...+.++.
T Consensus 201 k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~ 268 (363)
T 3rau_A 201 KSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKF 268 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhH
Confidence 3567899999999999999998864 4666654 566666555556666666655544333
No 42
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=28.96 E-value=34 Score=20.49 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhcHHHHHHhhccC
Q 035101 51 LNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 51 l~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.++.|.++...+..+|+.||+++
T Consensus 31 ~~~~~~~ls~~el~~f~~LL~~~ 53 (82)
T 1puz_A 31 MEKEFEHLSDKELSEFSEILEFQ 53 (82)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHcCC
Confidence 45667778888999999999874
No 43
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.43 E-value=40 Score=18.81 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=16.5
Q ss_pred ccccCCChHHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGYV 23 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sYv 23 (73)
+.||+++++-...|...+..|.
T Consensus 112 l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 112 ITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp EECCSSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHc
Confidence 5689999888887777666554
No 44
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=28.17 E-value=6 Score=23.34 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.+...||..+.+.+...+.+++.+|
T Consensus 5 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D 32 (134)
T 3grd_A 5 ANLEIIRSTYEGSASSNAKHLAEALSEK 32 (134)
T ss_dssp CHHHHHHTTTSSCHHHHHHHHHHHEEEE
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 3456788888888888888888888775
No 45
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=27.61 E-value=47 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.-+.++++||..+.+.+...+.+++.||
T Consensus 10 ~~~~~~v~ry~~A~n~gD~d~l~~l~aeD 38 (156)
T 3g16_A 10 AAMEKVIRTYYDGCNEADEAKMIACFVPE 38 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34567889999999999998899888876
No 46
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=27.54 E-value=48 Score=19.96 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+.+...||..+.......+.+++.+|
T Consensus 5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D 32 (152)
T 2gex_A 5 ANKERCLEMVAAWNRWDVSGVVAHWAPD 32 (152)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3456778888888888888888887765
No 47
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=27.15 E-value=86 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHH
Q 035101 14 WISQKVSGYVEAVLNSLAAN-VPKAIVLCQ 42 (73)
Q Consensus 14 ~i~~~V~sYv~~V~~tL~~s-VPKAiVhcq 42 (73)
.+..-|..|+++.++.+-.. =||-|||-.
T Consensus 164 ~~l~kv~~~i~~L~~d~~rklkpK~vmyla 193 (241)
T 2p62_A 164 GILEKYRGSMRALSQDKGDKLTPKDVMHIL 193 (241)
T ss_dssp THHHHCSHHHHHHHHHHTSCBCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccCHHHHHHHH
Confidence 34567788999998877655 499999944
No 48
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.61 E-value=97 Score=17.82 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 43 VEKAKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 43 V~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
+...-....+.++..++..|.++|.++|+
T Consensus 107 ~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 135 (142)
T 2fbi_A 107 MSGDMEKNYQRIQERFGEEKLAQLLELLN 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 34445566778888888888888887775
No 49
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=26.45 E-value=50 Score=17.79 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035101 10 EELRWISQKVSGYVEAVL 27 (73)
Q Consensus 10 ~~lr~i~~~V~sYv~~V~ 27 (73)
+.|++--+.++-|+++|-
T Consensus 15 Eela~Y~~~Lr~YinlvT 32 (37)
T 1f8p_A 15 EDLARYYSALRHYINLIT 32 (37)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 367777888888888874
No 50
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.89 E-value=48 Score=18.79 Aligned_cols=21 Identities=5% Similarity=0.051 Sum_probs=16.4
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-+..|...+..+
T Consensus 108 l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 108 LEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECSSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhc
Confidence 578999998888887776654
No 51
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=25.63 E-value=85 Score=18.44 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++=+.+.+.|+..+...+...+.+++.+|
T Consensus 13 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~d 41 (143)
T 2ux0_A 13 QEIIKITEQLIEAINNGDFEAYTKICDPG 41 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34457889999999999999998887764
No 52
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.51 E-value=28 Score=19.47 Aligned_cols=21 Identities=5% Similarity=-0.175 Sum_probs=15.0
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-.+++....+.+
T Consensus 103 l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 103 LEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EESSCCHHHHHHHHHHHC---
T ss_pred eeCCCCHHHHHHHHHHhhccC
Confidence 579999999888888766554
No 53
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.43 E-value=51 Score=18.61 Aligned_cols=22 Identities=0% Similarity=-0.035 Sum_probs=16.4
Q ss_pred ccccCCChHHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGYV 23 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sYv 23 (73)
+.||+++++-...|...+..|.
T Consensus 119 l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 119 IVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp EECCSSHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhh
Confidence 5689999888777777666554
No 54
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.98 E-value=67 Score=18.09 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=15.8
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-...|......+
T Consensus 106 l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 106 LPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHH
Confidence 578999998887777666554
No 55
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=22.80 E-value=1.8e+02 Score=19.84 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=5.1
Q ss_pred cHHHHHHhh
Q 035101 62 STAMIEELL 70 (73)
Q Consensus 62 e~~ql~~LL 70 (73)
...+|.+||
T Consensus 217 ~~~Rf~~LL 225 (271)
T 1l2j_A 217 QSMRLANLL 225 (271)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 445666665
No 56
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=22.70 E-value=74 Score=19.28 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
=+.+++.|+..+...+...+.++..||
T Consensus 22 I~~~~~~~~~A~~~~D~~~l~~l~a~D 48 (156)
T 3h51_A 22 VAALFDTWNAALATGNPHKVADLYAPD 48 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 356677777777777777777776554
No 57
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=22.61 E-value=1.2e+02 Score=24.15 Aligned_cols=54 Identities=9% Similarity=0.198 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHH-HHHHHhHHHHHHHHHHHHHhhhc
Q 035101 9 EEELRWISQKVSGYVEAVLNSLA--ANVPKAIV-LCQVEKAKEDMLNQLYSSVNAQS 62 (73)
Q Consensus 9 d~~lr~i~~~V~sYv~~V~~tL~--~sVPKAiV-hcqV~~aKr~Ll~~l~~~l~~~e 62 (73)
++-+.+++..++.|++.+.+.+. +.+|+.+. |+++..+--.-+-++|..+...+
T Consensus 216 ~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e 272 (704)
T 2xs1_A 216 DAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ 272 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46789999999999999999987 77887655 45555444344555555554333
No 58
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=22.29 E-value=14 Score=22.63 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 43 VEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 43 V~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-+++.+.+...||..+.+.....+.+++.+|
T Consensus 9 ~~~~~~~~v~~~~~a~~~~d~~~~~~~~a~D 39 (153)
T 2f99_A 9 HRSEQIAAVRRMVEAYNTGKTDDVADYIHPE 39 (153)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCTTGGGTEEEE
T ss_pred hhhHHHHHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 3566777788899888777776677776654
No 59
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.25 E-value=56 Score=18.60 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=16.5
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-+..|...+..+
T Consensus 103 l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 103 LTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EESSCCHHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHhhH
Confidence 568999999888887776654
No 60
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.98 E-value=1.3e+02 Score=17.45 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
...-....+.++..++..|..+|.++|+
T Consensus 105 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 132 (145)
T 2a61_A 105 IERRENFIEKITSDLGKEKSSKILDYLK 132 (145)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455666777777777777766654
No 61
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=21.69 E-value=70 Score=18.61 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+-+.+...+|..+.......+.+++.||
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D 35 (139)
T 2a15_A 8 PALIASQSSWRCVQAHDREGWLALMADD 35 (139)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 3455678888888888888888877665
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.63 E-value=1.7e+02 Score=18.92 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 035101 7 DPEEELRWISQKVSGYVEAVLNS---LAANVPKAIVLCQVE 44 (73)
Q Consensus 7 ~~d~~lr~i~~~V~sYv~~V~~t---L~~sVPKAiVhcqV~ 44 (73)
++++||+.+++.|..-+.-+++. =.-+..+..|.+-++
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALN 65 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLN 65 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 57899999999998888888732 222444555555443
No 63
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=21.63 E-value=57 Score=18.70 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=15.1
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-+..|...+..+
T Consensus 105 l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 105 VMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp EETTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 568999988877776655443
No 64
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=21.53 E-value=81 Score=18.53 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++=+.+++.++..+...+...+.++..+|
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D 36 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADD 36 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 34567888888888888888787776654
No 65
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=21.43 E-value=44 Score=19.52 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHHHHHHH--HHHhhhcHHHHHHhhc
Q 035101 48 EDMLNQLY--SSVNAQSTAMIEELLQ 71 (73)
Q Consensus 48 r~Ll~~l~--~~l~~~e~~ql~~LL~ 71 (73)
..++..|+ ..+...|.++|.++|+
T Consensus 96 ~~~~~~~~~~~~ls~ee~~~l~~~L~ 121 (126)
T 1sd4_A 96 KSLVLNFAKNEELNNKEIEELRDILN 121 (126)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35666666 4677788888887775
No 66
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.38 E-value=38 Score=17.51 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=8.8
Q ss_pred hhhcHHHHHHhhcc
Q 035101 59 NAQSTAMIEELLQE 72 (73)
Q Consensus 59 ~~~e~~ql~~LL~E 72 (73)
.+-+.+|+++||+.
T Consensus 7 trfdekqieelldn 20 (31)
T 4h62_V 7 TRFDEKQIEELLDN 20 (31)
T ss_dssp ---CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 34567899999873
No 67
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=21.31 E-value=47 Score=21.83 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 49 DMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 49 ~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+++.|++.+...+...|.+||.||
T Consensus 22 ~~v~~f~~A~~~gD~~aL~~LlA~D 46 (155)
T 3flj_A 22 PTIARMQEVVAKGDESLIHALLAED 46 (155)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHhcCCC
Confidence 4689999999999999999999886
No 68
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=21.30 E-value=57 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhcHHHHHHhhccC
Q 035101 51 LNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 51 l~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+..|.++...+..+|+.||+++
T Consensus 46 ~~~~~~~ls~~el~~f~~LL~~~ 68 (109)
T 2lm4_A 46 AAKYLKKMNEEELEEYDSLLNEL 68 (109)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTSC
T ss_pred HHHHHccCCHHHHHHHHHHHcCC
Confidence 45667778888888999999864
No 69
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.44 E-value=1.4e+02 Score=17.42 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
.-....+.++..++..|.++|.++|+
T Consensus 105 ~~~~~~~~~~~~l~~~e~~~l~~~l~ 130 (145)
T 3g3z_A 105 SAQEFSDKVFATFGDKRTTRLFADLD 130 (145)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33445556666666666666655553
No 70
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=20.43 E-value=64 Score=18.33 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=13.6
Q ss_pred ccccCCChHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSG 21 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~s 21 (73)
+.||+++++-...|...+..
T Consensus 108 l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 108 ILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 56889888876666655443
No 71
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.28 E-value=58 Score=18.30 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=15.1
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-...|...+..+
T Consensus 109 l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 109 LAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp EEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhcc
Confidence 468899888777777665544
No 72
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=20.26 E-value=43 Score=23.40 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 035101 15 ISQKVSGYVEAVLNSLAANV 34 (73)
Q Consensus 15 i~~~V~sYv~~V~~tL~~sV 34 (73)
|+.....|.++|+.||.+++
T Consensus 1 Ma~tl~pYl~~Vr~tL~aAl 20 (168)
T 3dwl_F 1 MSNTLRPYLNAVRSTLTASL 20 (168)
T ss_dssp --CCHHHHHHHHHHHHHHHT
T ss_pred CCcchhhHHHHHHHHHHHHH
Confidence 34567889999999998753
No 73
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.26 E-value=62 Score=18.42 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=15.4
Q ss_pred ccccCCChHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGY 22 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sY 22 (73)
+.||+++++-+.+|......+
T Consensus 107 l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 107 IEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EESSBCHHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHhcc
Confidence 568999988888777655543
No 74
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=20.25 E-value=2.1e+02 Score=19.45 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.9
Q ss_pred HHHHHHhh
Q 035101 63 TAMIEELL 70 (73)
Q Consensus 63 ~~ql~~LL 70 (73)
..+|.+||
T Consensus 190 ~~Rf~~LL 197 (268)
T 1yye_A 190 SMRLANLL 197 (268)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 34455554
No 75
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=20.10 E-value=1.1e+02 Score=17.56 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred HhHHH-HHHHHHHHHHhhhcHHHHHHhhc
Q 035101 44 EKAKE-DMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 44 ~~aKr-~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
...-. .+.+.++..++..|.++|.++|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 134 (138)
T 1jgs_A 106 HQLVGQDLHQELTKNLTADEVATLEYLLK 134 (138)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33344 66778888899999988888875
No 76
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.06 E-value=66 Score=18.17 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=14.1
Q ss_pred ccccCCChHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSG 21 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~s 21 (73)
+.||+++++-+..|...+..
T Consensus 108 l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 108 ITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 56899988877777655443
Done!