Query 035101
Match_columns 73
No_of_seqs 81 out of 83
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 15:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035101.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035101hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bb9a1 d.17.4.16 (A:27-147) U 76.3 0.7 5.1E-05 25.5 2.0 31 43-73 1-31 (121)
2 d3en8a1 d.17.4.20 (A:1-127) Un 71.1 1.1 8.3E-05 25.8 2.2 30 44-73 3-32 (127)
3 d2g9wa1 a.4.5.39 (A:3-124) Hyp 70.2 1.6 0.00011 25.9 2.7 27 46-72 93-119 (122)
4 d1z1sa1 d.17.4.10 (A:1-129) Un 60.4 3 0.00021 22.9 2.4 26 48-73 4-29 (129)
5 d1tuha_ d.17.4.11 (A:) Hypothe 53.9 5.9 0.00043 21.7 3.0 28 46-73 5-32 (131)
6 d1sd4a_ a.4.5.39 (A:) Penicill 52.5 8.6 0.00062 22.6 3.8 27 46-72 90-118 (122)
7 d1ohpa1 d.17.4.3 (A:1-125) Del 52.0 4.6 0.00033 21.9 2.3 27 47-73 7-33 (125)
8 d1s5aa_ d.17.4.10 (A:) Hypothe 51.0 5.7 0.00042 22.1 2.7 27 47-73 7-33 (139)
9 d1nwwa_ d.17.4.8 (A:) Limonene 48.9 7.5 0.00055 22.3 3.0 27 47-73 20-46 (145)
10 d3dm8a1 d.17.4.20 (A:1-135) Un 47.9 4.5 0.00032 22.8 1.8 28 46-73 5-32 (135)
11 d1oh0a_ d.17.4.3 (A:) Delta-5- 47.8 8.4 0.00061 21.1 3.0 29 45-73 5-33 (125)
12 d3dmca1 d.17.4.10 (A:1-133) Un 41.6 7.1 0.00052 22.2 2.1 27 47-73 13-39 (133)
13 d1k66a_ c.23.1.1 (A:) Response 41.4 4.3 0.00032 24.1 1.0 25 2-26 119-143 (149)
14 d3ec9a1 d.17.4.10 (A:10-139) U 41.1 8.2 0.0006 21.0 2.2 27 47-73 4-30 (130)
15 d2gfna1 a.4.1.9 (A:4-80) Proba 40.0 15 0.0011 19.2 3.2 40 33-73 37-76 (77)
16 d1ecda_ a.1.1.2 (A:) Erythrocr 39.5 30 0.0022 19.7 4.9 55 5-59 73-133 (136)
17 d1t3ua_ d.244.1.1 (A:) ZapA ho 39.0 13 0.00093 20.4 2.9 40 4-43 15-55 (92)
18 d1okra_ a.4.5.39 (A:) Methicil 37.3 24 0.0017 19.9 4.0 24 49-72 94-119 (120)
19 d2id3a2 a.121.1.1 (A:81-203) P 34.4 37 0.0027 19.2 8.2 56 16-71 7-63 (123)
20 d1puza_ a.218.1.1 (A:) Hypothe 34.0 12 0.00086 21.0 2.1 23 51-73 31-53 (82)
21 d2bnga1 d.17.4.8 (A:13-144) Un 33.7 15 0.0011 20.6 2.6 25 49-73 7-31 (132)
22 d1y9ba1 a.43.1.9 (A:3-83) Hypo 32.7 37 0.0027 18.8 4.9 40 33-72 29-68 (81)
23 d1xpca_ a.123.1.1 (A:) Estroge 32.4 47 0.0034 20.7 5.2 18 42-59 168-185 (245)
24 d1w25a2 c.23.1.1 (A:141-293) R 30.3 14 0.001 21.9 2.1 19 2-20 112-130 (153)
25 d1jgsa_ a.4.5.28 (A:) Multiple 29.5 32 0.0023 19.5 3.7 25 47-71 110-134 (138)
26 d1z67a1 a.259.1.1 (A:3-131) Hy 27.8 27 0.002 21.5 3.2 37 4-40 57-101 (129)
27 d2c52b1 a.153.1.1 (B:303-353) 27.6 8.6 0.00062 20.9 0.7 22 47-68 10-31 (51)
28 d3ebta1 d.17.4.9 (A:1-131) Unc 25.6 21 0.0015 19.3 2.2 26 48-73 5-30 (131)
29 d1t56a1 a.4.1.9 (A:22-94) Ethr 25.2 25 0.0019 17.9 2.4 39 32-71 33-71 (73)
30 d2k54a1 d.17.4.29 (A:1-123) Un 25.2 24 0.0018 19.4 2.5 26 48-73 6-31 (123)
31 d2r4ia1 d.17.4.15 (A:1-122) Un 23.7 31 0.0022 18.3 2.7 26 48-73 8-33 (122)
32 d1lqla_ d.227.1.1 (A:) Hypothe 23.4 20 0.0014 20.9 1.9 27 8-35 104-130 (141)
33 d2fbia1 a.4.5.28 (A:5-140) Pro 23.1 59 0.0043 18.1 4.0 30 42-71 100-129 (136)
34 d1yioa2 c.23.1.1 (A:3-130) Res 21.9 26 0.0019 19.7 2.1 18 2-19 101-118 (128)
35 d2bsza1 d.3.1.5 (A:6-275) Aryl 21.3 13 0.00097 24.4 0.8 12 5-16 1-12 (270)
36 d1w25a1 c.23.1.1 (A:2-140) Res 20.9 23 0.0017 20.3 1.8 19 2-20 102-120 (139)
37 d1vi0a1 a.4.1.9 (A:6-77) Hypot 20.3 45 0.0033 16.8 2.8 39 33-72 32-70 (72)
38 d3blza1 d.17.4.14 (A:3-126) Un 20.2 46 0.0033 18.3 3.0 29 45-73 9-37 (124)
No 1
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}
Probab=76.25 E-value=0.7 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 43 VEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 43 V~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
|..|-.++++.|++.+...+.+.+.+|+.+|
T Consensus 1 ~~~a~~~v~~~~~~A~~~~D~~~~~~l~a~D 31 (121)
T d3bb9a1 1 VDSAAGNVVKQFHAALQMGNEAIVRQSLAAN 31 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence 4567789999999999999999999998765
No 2
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}
Probab=71.14 E-value=1.1 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 44 EKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 44 ~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++..+++.+.||..+...+.+.+.+|+.||
T Consensus 3 ~e~~~~~v~~~~~A~~~gD~da~~~l~adD 32 (127)
T d3en8a1 3 EEKIREALNAHWQASAAGDFDAEHDIYDDD 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhcCC
Confidence 466788999999999999999999999886
No 3
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=70.17 E-value=1.6 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhcc
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQE 72 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~E 72 (73)
+...++.+|+.++...|.++|+++|++
T Consensus 93 s~~~~~~~l~~~ls~~el~~L~~ll~~ 119 (122)
T d2g9wa1 93 SRQAALVHFVERVGADEADALRRALAE 119 (122)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 444567777788999999999999875
No 4
>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=60.36 E-value=3 Score=22.92 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.++.+||..+.....+.+.+|+.||
T Consensus 4 ~eiv~~~~~~~~~gD~~~~~~l~a~D 29 (129)
T d1z1sa1 4 KEILVHSLRLLENGDARGWCDLFHPE 29 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcCc
Confidence 56889999999999999999998876
No 5
>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]}
Probab=53.89 E-value=5.9 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
....+...||..+...+.+.+.+||.||
T Consensus 5 ~n~~vv~~~~~a~~~~D~~~~~~l~~~D 32 (131)
T d1tuha_ 5 QNAETVRRGYAAFNSGDMKTLTELFDEN 32 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 4456789999999999999999999876
No 6
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=52.48 E-value=8.6 Score=22.55 Aligned_cols=27 Identities=7% Similarity=0.293 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH--HhhhcHHHHHHhhcc
Q 035101 46 AKEDMLNQLYSS--VNAQSTAMIEELLQE 72 (73)
Q Consensus 46 aKr~Ll~~l~~~--l~~~e~~ql~~LL~E 72 (73)
+-..|+.+|+.. +..++.++|.++|++
T Consensus 90 s~~~lv~~~~~~~~ls~~el~eL~~~l~~ 118 (122)
T d1sd4a_ 90 DMKSLVLNFAKNEELNNKEIEELRDILND 118 (122)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 444566666655 788888888888875
No 7
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=51.97 E-value=4.6 Score=21.85 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-+.++++|+..+.....+.+.+|+.||
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D 33 (125)
T d1ohpa1 7 MTAVVQRYVAALNAGDLDGIVALFADD 33 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCCc
Confidence 356899999999999999999998875
No 8
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}
Probab=50.99 E-value=5.7 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
...+.++||+.+.......+.+|+.||
T Consensus 7 ~~e~v~~~~~a~~~~D~~~~~~l~~eD 33 (139)
T d1s5aa_ 7 ACETLRKFMAYMLEKDMKSWTELWDEN 33 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCCc
Confidence 446789999999999999999998876
No 9
>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=48.90 E-value=7.5 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.|...||..+...+...+.+++.||
T Consensus 20 ~~~lv~~~~~A~~~~D~~~~~~~~~~D 46 (145)
T d1nwwa_ 20 DEKIVLEFMDALTSNDAAKLIEYFAED 46 (145)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 457899999999999999999999887
No 10
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=47.93 E-value=4.5 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 46 AKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 46 aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
....|-..||+.+..++...+.+||.+|
T Consensus 5 ~~~~~~~~~y~A~~~~d~d~~~~l~~~D 32 (135)
T d3dm8a1 5 SLWRFSRALHRALNDRQTEELATIIDDN 32 (135)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHEEEE
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 4567788999999999999999999876
No 11
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=47.84 E-value=8.4 Score=21.06 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++-+.+.+.++..+.+.+...+.+|+.||
T Consensus 5 e~~~~~v~~y~~a~~~~D~d~~~~l~~~d 33 (125)
T d1oh0a_ 5 QEVQGLMARYIELVDVGDIEAIVQMYADD 33 (125)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCCC
Confidence 45567889999999999998888888775
No 12
>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}
Probab=41.56 E-value=7.1 Score=22.19 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-+++.++|++.+...+...+.+||.||
T Consensus 13 a~~~~e~f~~a~~~gD~d~~~~l~~~D 39 (133)
T d3dmca1 13 AHQGFEFFTQGLATGEWQKFLDMLTED 39 (133)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhccc
Confidence 346688999999999988899998886
No 13
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=41.35 E-value=4.3 Score=24.13 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=20.1
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVSGYVEAV 26 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~sYv~~V 26 (73)
+.||+++++-+..|.+.+..|.+.|
T Consensus 119 l~KP~~~~~L~~~i~~~l~~~~~~~ 143 (149)
T d1k66a_ 119 IVKPLEIDRLTETVQTFIKYWLDIV 143 (149)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTS
T ss_pred EECCCCHHHHHHHHHHHHHHHhccC
Confidence 5799999999999988888776543
No 14
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=41.08 E-value=8.2 Score=21.03 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
-+++...||..+.+.....+.++|.||
T Consensus 4 ~~~iv~~~~~A~~~~D~d~~~~~~a~D 30 (130)
T d3ec9a1 4 PYQIVADHYAASDRHDPAAMMADIAPA 30 (130)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHCcCHHHHHHhcCcc
Confidence 357789999999999999999988876
No 15
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=39.98 E-value=15 Score=19.24 Aligned_cols=40 Identities=8% Similarity=0.124 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 33 NVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 33 sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.|+++.+|=-. ..|..|+...+......-..++.+.++++
T Consensus 37 gvs~~~lY~~F-~~K~~L~~~~~~~~~~~~~~~~~~~~~~~ 76 (77)
T d2gfna1 37 GWSTGVLNHYF-GSRHELLLAALRRAGDIQGDRYRTILDEE 76 (77)
T ss_dssp SSCHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35666665333 48999999999999988888888888764
No 16
>d1ecda_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}
Probab=39.52 E-value=30 Score=19.66 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=31.9
Q ss_pred cCCChHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 035101 5 LADPEEELRWISQKVS------GYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSSVN 59 (73)
Q Consensus 5 ~~~~d~~lr~i~~~V~------sYv~~V~~tL~~sVPKAiVhcqV~~aKr~Ll~~l~~~l~ 59 (73)
+-|++..++.+|..=. .|++.+...|...+.+.+-..-+..|=..+++.++.-|.
T Consensus 73 l~~~~~~l~~L~~~H~~~gv~~~~f~~~~~~l~~~l~~~l~~~e~~~AW~~~~~~~~~~~~ 133 (136)
T d1ecda_ 73 LPNIEADVNTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGATLDTFFGMIF 133 (136)
T ss_dssp TTCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4456666666654432 366666666666666655444455566666666665554
No 17
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.01 E-value=13 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Q 035101 4 RLADPEEELRWISQKVSGYVEAVLNSLA-ANVPKAIVLCQV 43 (73)
Q Consensus 4 ~~~~~d~~lr~i~~~V~sYv~~V~~tL~-~sVPKAiVhcqV 43 (73)
=|.++|+||+..+..|...+.-+++... .+.-+..|-+-.
T Consensus 15 c~~~eee~l~~aA~~ln~k~~~l~~~~~~~~~~~~lvmaaL 55 (92)
T d1t3ua_ 15 CPDDERANLESAARYLDGKMREIRSSGKVIGADRVAVMAAL 55 (92)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4667788999999999999988876643 223344444444
No 18
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=37.25 E-value=24 Score=19.92 Aligned_cols=24 Identities=4% Similarity=0.249 Sum_probs=17.1
Q ss_pred HHHHHHHHH--HhhhcHHHHHHhhcc
Q 035101 49 DMLNQLYSS--VNAQSTAMIEELLQE 72 (73)
Q Consensus 49 ~Ll~~l~~~--l~~~e~~ql~~LL~E 72 (73)
.++.+|+.+ +..+|.++|.++|+|
T Consensus 94 ~~~~~~~~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 94 SLVLNFVEKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHhc
Confidence 444455544 778888899999886
No 19
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=34.38 E-value=37 Score=19.22 Aligned_cols=56 Identities=5% Similarity=0.020 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHHhhhcHHHHHHhhc
Q 035101 16 SQKVSGYVEAVLNSLAANVPKAIVLCQVEKAKE-DMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 16 ~~~V~sYv~~V~~tL~~sVPKAiVhcqV~~aKr-~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
...+..|+..+...+.....-+++++.+-++.+ .-+..++..+...-...+..+|+
T Consensus 7 r~DL~~~l~~~~~~l~~p~~~~~~~~l~ae~~~~p~l~~~~~~~~~~r~~~~~~il~ 63 (123)
T d2id3a2 7 EEDLRANARLVVRTLDDPRQGRLFRALIAASLCNEQAAEALHRFYAVRVDEWAGCVR 63 (123)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889888889999999988765 23445556666655656666653
No 20
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=34.04 E-value=12 Score=20.97 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhcHHHHHHhhccC
Q 035101 51 LNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 51 l~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.-|.++...+.++|++||+++
T Consensus 31 ~~~~~~~l~~~el~~f~~lL~~~ 53 (82)
T d1puza_ 31 MEKEFEHLSDKELSEFSEILEFQ 53 (82)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHCCHHHHHHHHHHHcCC
Confidence 44556778888999999999864
No 21
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=33.70 E-value=15 Score=20.57 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 49 DMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 49 ~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.+.+.||..+.+.+...+.+++.+|
T Consensus 7 ~~V~~f~~A~~~~D~d~~~~~~a~D 31 (132)
T d2bnga1 7 RAVEAFLNALQNEDFDTVDAALGDD 31 (132)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHccCHHHHHHHhccc
Confidence 5678999999999999999998876
No 22
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=32.74 E-value=37 Score=18.77 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhcc
Q 035101 33 NVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQE 72 (73)
Q Consensus 33 sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~E 72 (73)
|+---|+-..+++|++-|.++-.-.|..+.-..|-+.|++
T Consensus 29 tls~Fv~~aa~~~A~~vi~~~~~~~Ls~~~~~~f~~aLd~ 68 (81)
T d1y9ba1 29 SINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDN 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHhHheeeCHHHHHHHHHHHhC
Confidence 4455677788899999999999999999999999888875
No 23
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.38 E-value=47 Score=20.75 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHhHHHHHHHHHHHHHh
Q 035101 42 QVEKAKEDMLNQLYSSVN 59 (73)
Q Consensus 42 qV~~aKr~Ll~~l~~~l~ 59 (73)
.|.+.++.++..|...+.
T Consensus 168 ~v~~~q~~~~~aL~~~~~ 185 (245)
T d1xpca_ 168 HIHRVLDKITDTLIHLMA 185 (245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666665553
No 24
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=30.33 E-value=14 Score=21.91 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=14.6
Q ss_pred ccccCCChHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVS 20 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~ 20 (73)
+.||+++++-+.+|.+.+.
T Consensus 112 l~KP~~~~~L~~~i~~~l~ 130 (153)
T d1w25a2 112 LSRPIDPQELSARVKTQIQ 130 (153)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 5799999998877766543
No 25
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=29.52 E-value=32 Score=19.54 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
.+.+.+.+++.++..|.++|.++|.
T Consensus 110 ~~~~~~~~~~~l~~~e~~~l~~~L~ 134 (138)
T d1jgsa_ 110 GQDLHQELTKNLTADEVATLEYLLK 134 (138)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3556778899999999999988875
No 26
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=27.84 E-value=27 Score=21.49 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.6
Q ss_pred ccCCChH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 035101 4 RLADPEE--------ELRWISQKVSGYVEAVLNSLAANVPKAIVL 40 (73)
Q Consensus 4 ~~~~~d~--------~lr~i~~~V~sYv~~V~~tL~~sVPKAiVh 40 (73)
.|++|+. -+.++++.+--=-+.+...|+..+|++|=+
T Consensus 57 ~pIs~~ql~~~lG~d~l~~lA~q~Gl~~~~~~~~LA~~LP~~Vd~ 101 (129)
T d1z67a1 57 QSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDA 101 (129)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHhc
Confidence 5777665 455666665555678889999999998754
No 27
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.55 E-value=8.6 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHH
Q 035101 47 KEDMLNQLYSSVNAQSTAMIEE 68 (73)
Q Consensus 47 Kr~Ll~~l~~~l~~~e~~ql~~ 68 (73)
.+.||++||+-+.......|++
T Consensus 10 E~ALLdQL~t~L~n~D~~~LeE 31 (51)
T d2c52b1 10 EKALLEQLVSFLSGKDETELAE 31 (51)
T ss_dssp HHHHHHHHHHHHHTCSGGGTCT
T ss_pred HHHHHHHHHHHHhcCchhHHHH
Confidence 4689999999997776433443
No 28
>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=25.56 E-value=21 Score=19.27 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
.++...||......+...+.+++.||
T Consensus 5 ~~~v~~~~~a~~~~D~~~~~~~~a~D 30 (131)
T d3ebta1 5 MQTVRESYEAFHRRDLPGVLAALAPD 30 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhCcc
Confidence 46778899999999888888888765
No 29
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.23 E-value=25 Score=17.91 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 32 ANVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 32 ~sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
..|++..+|.-.. .|..|+..++......-...++.+++
T Consensus 33 agvs~~t~Y~~F~-~K~~L~~~~~~~~~~~~~~~~~~~~~ 71 (73)
T d1t56a1 33 AGISRPTFYFYFP-SKEAVLLTLLDRVVNQADMALQTLAE 71 (73)
T ss_dssp HTCCHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHCc-CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777777765 68888888888877766666655543
No 30
>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.22 E-value=24 Score=19.41 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
+.+.++||..+.+.+...+.+++.||
T Consensus 6 ~~~V~~~~~A~~~~D~e~~~~~~aeD 31 (123)
T d2k54a1 6 ELPVQKQLEAYNARDIDAFMAWWADD 31 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCC
Confidence 45788999999999999998888876
No 31
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=23.70 E-value=31 Score=18.28 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 48 EDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 48 r~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
..+...+++.+...+.+.+.+|+.+|
T Consensus 8 ~~~~~~~~~A~~~~D~~~l~~l~~~d 33 (122)
T d2r4ia1 8 LDCEKKLLTAIQNNDVESLEVLLHDD 33 (122)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHhhhccc
Confidence 46678889999999999999888765
No 32
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=23.42 E-value=20 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 035101 8 PEEELRWISQKVSGYVEAVLNSLAANVP 35 (73)
Q Consensus 8 ~d~~lr~i~~~V~sYv~~V~~tL~~sVP 35 (73)
+++.++++-..+..| +.|.++|++.+|
T Consensus 104 ~~e~~~~l~~~~~~~-CpV~~tL~~~~~ 130 (141)
T d1lqla_ 104 SETEIKEFIDFVSKR-CPAHNTLQGVSQ 130 (141)
T ss_dssp CHHHHHHHHHHHHHH-CHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHhc-CcHHHHhCCCce
Confidence 567788887777666 889999998776
No 33
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.14 E-value=59 Score=18.11 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhcHHHHHHhhc
Q 035101 42 QVEKAKEDMLNQLYSSVNAQSTAMIEELLQ 71 (73)
Q Consensus 42 qV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~ 71 (73)
++...-+..++.++.+++..|..+|-++|+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~ 129 (136)
T d2fbia1 100 SMSGDMEKNYQRIQERFGEEKLAQLLELLN 129 (136)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444555677888888888888888877764
No 34
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=21.91 E-value=26 Score=19.71 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=13.9
Q ss_pred ccccCCChHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKV 19 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V 19 (73)
+.||+++++-+++|.+.+
T Consensus 101 l~KP~~~~~L~~~i~~~l 118 (128)
T d1yioa2 101 LPKPFEEQALLDAIEQGL 118 (128)
T ss_dssp EESSCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHH
Confidence 579999998877776544
No 35
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]}
Probab=21.31 E-value=13 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.113 Sum_probs=11.1
Q ss_pred cCCChHHHHHHH
Q 035101 5 LADPEEELRWIS 16 (73)
Q Consensus 5 ~~~~d~~lr~i~ 16 (73)
|.|-|+||+||+
T Consensus 1 p~dl~~YL~rIg 12 (270)
T d2bsza1 1 PFDLDAYLARIG 12 (270)
T ss_dssp CCCHHHHHHHHT
T ss_pred CcCHHHHHHhcC
Confidence 789999999998
No 36
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=20.86 E-value=23 Score=20.33 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=14.8
Q ss_pred ccccCCChHHHHHHHHHHH
Q 035101 2 ARRLADPEEELRWISQKVS 20 (73)
Q Consensus 2 ~~~~~~~d~~lr~i~~~V~ 20 (73)
+.||+++++-+.+|...++
T Consensus 102 l~KP~~~~~L~~~i~~~lr 120 (139)
T d1w25a1 102 LTKPIDDVMLFARVRSLTR 120 (139)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHH
Confidence 5699999999888865543
No 37
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=20.32 E-value=45 Score=16.84 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhcHHHHHHhhcc
Q 035101 33 NVPKAIVLCQVEKAKEDMLNQLYSSVNAQSTAMIEELLQE 72 (73)
Q Consensus 33 sVPKAiVhcqV~~aKr~Ll~~l~~~l~~~e~~ql~~LL~E 72 (73)
-|+++-+|--.. .|..|+..++......-...+.+.+.|
T Consensus 32 gvs~~~~y~~F~-~K~~L~~~~~~~~~~~~~~~~~~~~~~ 70 (72)
T d1vi0a1 32 GVADGTIYLYFK-NKEDILISLFKEKMGQFIERMEEDIKE 70 (72)
T ss_dssp TSCHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHCc-CHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 466677766654 588888888887777666666665554
No 38
>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}
Probab=20.25 E-value=46 Score=18.25 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHhhccC
Q 035101 45 KAKEDMLNQLYSSVNAQSTAMIEELLQED 73 (73)
Q Consensus 45 ~aKr~Ll~~l~~~l~~~e~~ql~~LL~ED 73 (73)
++=+.|+..++.-+.....+.|.++..+|
T Consensus 9 ~aI~~li~~Y~~~~d~~D~~~l~~~F~~d 37 (124)
T d3blza1 9 HAIVEVLSKYNEGGKKADSTIMRPAFSSQ 37 (124)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHGGGEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 45566777777777777777777666543
Done!