BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035104
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax
          Disease Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax
          Disease Resistance Protein L6
          Length = 204

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 49/69 (71%)

Query: 4  SSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAI 63
          S SF S  Y+VFLSFRG DTR+ F   L ++LR+ KI +F D++EL +G  I P+LL+AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 64 KESKISVII 72
           +SKI V I
Sbjct: 88 DQSKIYVPI 96


>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis
          Thaliana
          Length = 176

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 5  SSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64
          SS ++ +YDVFLSFRG DTR NF+S L + L ++ I++F D++EL  G   SP L   I+
Sbjct: 2  SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61

Query: 65 ESKISVII 72
           S+ +V++
Sbjct: 62 VSRFAVVV 69


>pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|B Chain B, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|C Chain C, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|D Chain D, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|E Chain E, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
 pdb|3OTR|F Chain F, 2.75 Angstrom Crystal Structure Of Enolase 1 From
           Toxoplasma Gondii
          Length = 452

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 12  YDVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42
           + V +S R  +T D+F++ LV  LR  +IKS
Sbjct: 377 WGVQVSHRSGETEDSFIADLVVGLRCGQIKS 407


>pdb|1OEP|A Chain A, Structure Of Trypanosoma Brucei Enolase Reveals The
           Inhibitory Divalent Metal Site
          Length = 432

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 1   MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42
           +ASS       + V +S R  +T D +++ LV AL   +IK+
Sbjct: 357 IASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 398


>pdb|2PTW|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Sulphate, Identification Of A Metal Binding Site Iv
 pdb|2PTX|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Sulphate In Closed Conformation
 pdb|2PTY|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Pep
 pdb|2PTZ|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Phosphonoacetohydroxamate (Pah), His156-Out Conformation
 pdb|2PU0|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Phosphonoacetohydroxamate (Pah), His156-In Conformation
 pdb|2PU1|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
           Fluoro-Phosphonoacetohydroxamate (Fpah)
          Length = 432

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 1   MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42
           +ASS       + V +S R  +T D +++ LV AL   +IK+
Sbjct: 357 IASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 398


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,841,132
Number of Sequences: 62578
Number of extensions: 57084
Number of successful extensions: 199
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)