Query 035104
Match_columns 73
No_of_seqs 104 out of 907
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 99.9 5.9E-28 2E-32 161.0 2.8 68 6-73 3-70 (176)
2 3ozi_A L6TR; plant TIR domain, 99.9 1.5E-27 5E-32 162.3 4.2 65 9-73 33-97 (204)
3 3h16_A TIR protein; bacteria T 99.9 3.9E-22 1.3E-26 128.3 4.7 64 9-73 18-81 (154)
4 1fyx_A TOLL-like receptor 2; b 99.7 1.4E-18 4.7E-23 111.7 4.3 63 9-73 3-68 (149)
5 3ub2_A TOLL/interleukin-1 rece 99.7 2.7E-19 9.2E-24 115.1 0.3 63 9-73 8-72 (146)
6 1t3g_A X-linked interleukin-1 99.7 8.4E-18 2.9E-22 109.3 4.8 64 10-73 1-75 (159)
7 2j67_A TOLL like receptor 10; 99.7 1.4E-17 4.8E-22 110.2 4.6 63 9-73 33-98 (178)
8 2js7_A Myeloid differentiation 99.7 3.6E-17 1.2E-21 106.4 4.0 63 9-73 14-79 (160)
9 3j0a_A TOLL-like receptor 5; m 99.3 3.2E-12 1.1E-16 97.5 6.0 63 9-73 668-736 (844)
10 1eiw_A Hypothetical protein MT 92.1 0.074 2.5E-06 32.4 1.9 27 10-40 3-29 (111)
11 2jug_A TUBC protein; docking d 88.0 0.57 1.9E-05 26.2 3.3 40 28-67 7-49 (78)
12 4fyk_A Deoxyribonucleoside 5'- 81.4 3.4 0.00012 26.3 5.0 60 13-73 4-76 (152)
13 2yvq_A Carbamoyl-phosphate syn 81.2 2.9 0.0001 25.7 4.6 58 14-73 27-102 (143)
14 2khz_A C-MYC-responsive protei 78.3 9.7 0.00033 23.8 6.4 62 11-73 11-85 (165)
15 2f62_A Nucleoside 2-deoxyribos 77.8 2.7 9.4E-05 26.7 3.7 48 26-73 27-75 (161)
16 2i4l_A Proline-tRNA ligase; al 77.1 1.7 5.9E-05 31.4 2.9 38 11-48 365-404 (458)
17 3hyn_A Putative signal transdu 76.6 6.9 0.00024 26.0 5.5 60 12-73 6-87 (189)
18 1evl_A Threonyl-tRNA synthetas 75.2 2.6 8.8E-05 29.7 3.3 37 10-47 297-333 (401)
19 1wu7_A Histidyl-tRNA synthetas 73.9 3.2 0.00011 29.4 3.6 36 11-47 332-367 (434)
20 1sc3_B Interleukin-1 beta conv 70.6 1.7 5.8E-05 25.0 1.3 25 15-39 21-45 (88)
21 1nj1_A PROR, proline-tRNA synt 69.5 3.3 0.00011 30.5 2.9 39 10-48 313-355 (501)
22 1qe0_A Histidyl-tRNA synthetas 68.7 3 0.0001 29.2 2.5 37 10-47 328-364 (420)
23 3hjn_A DTMP kinase, thymidylat 68.0 7.5 0.00026 24.7 4.1 32 15-46 2-35 (197)
24 2ql9_B Caspase-7; cysteine pro 67.1 2 6.8E-05 24.9 1.1 25 15-39 23-47 (97)
25 1qtn_B Caspase-8; apoptosis, d 66.3 1.9 6.6E-05 25.0 0.9 25 15-39 25-49 (95)
26 1hc7_A Prolyl-tRNA synthetase; 66.1 5 0.00017 29.3 3.2 38 10-47 286-327 (477)
27 3ikl_A DNA polymerase subunit 65.9 7.4 0.00025 28.8 4.1 26 22-47 361-388 (459)
28 2dko_B Caspase-3; low barrier 64.6 2.4 8.2E-05 25.0 1.1 25 15-39 29-53 (103)
29 4aio_A Limit dextrinase; hydro 64.6 6.2 0.00021 29.9 3.6 36 9-45 353-398 (884)
30 3net_A Histidyl-tRNA synthetas 64.5 17 0.00059 26.2 5.8 37 10-47 370-406 (465)
31 1htt_A Histidyl-tRNA synthetas 64.2 4.5 0.00016 28.4 2.6 37 10-47 326-364 (423)
32 2j3l_A Prolyl-tRNA synthetase; 62.8 4.4 0.00015 29.8 2.5 58 11-72 470-530 (572)
33 1v95_A Nuclear receptor coacti 62.5 15 0.0005 22.8 4.5 62 7-72 4-67 (130)
34 1pyo_B Caspase-2; apoptosis, c 62.2 2.8 9.6E-05 24.7 1.1 25 15-39 27-51 (105)
35 4g84_A Histidine--tRNA ligase, 61.4 24 0.00083 24.9 6.0 37 9-46 364-400 (464)
36 3a32_A Probable threonyl-tRNA 61.0 15 0.00053 26.4 5.0 36 11-46 338-378 (471)
37 1nyr_A Threonyl-tRNA synthetas 60.6 5.6 0.00019 29.9 2.7 37 11-47 545-581 (645)
38 1bax_A M-PMV MA, M-PMV matrix 60.5 4.7 0.00016 24.0 1.8 17 26-42 10-26 (94)
39 1qf6_A THRRS, threonyl-tRNA sy 60.1 5.5 0.00019 30.2 2.6 37 11-48 539-575 (642)
40 2xzd_B Caspase-3; hydrolase-pr 58.1 4 0.00014 24.8 1.3 26 14-39 27-52 (118)
41 4g85_A Histidine-tRNA ligase, 58.0 33 0.0011 24.9 6.4 37 9-46 417-453 (517)
42 2lpy_A Matrix protein P10; GAG 57.0 6 0.0002 24.6 2.0 20 25-44 8-27 (124)
43 2zt5_A Glycyl-tRNA synthetase; 55.4 11 0.00037 29.1 3.5 37 11-47 559-596 (693)
44 3lc0_A Histidyl-tRNA synthetas 53.1 36 0.0012 24.6 5.9 36 10-46 360-395 (456)
45 1g5h_A Mitochondrial DNA polym 52.9 9 0.00031 27.9 2.7 37 11-47 338-378 (454)
46 3rjm_B Caspase-2; caspase-2, c 51.7 5.1 0.00017 24.2 1.0 27 13-39 26-52 (117)
47 4e51_A Histidine--tRNA ligase; 50.6 30 0.001 25.0 5.1 61 10-72 353-415 (467)
48 1ati_A Glycyl-tRNA synthetase; 50.0 12 0.00041 27.5 2.9 37 11-47 398-437 (505)
49 3uh0_A Threonyl-tRNA synthetas 49.1 15 0.00051 26.7 3.3 43 11-53 345-403 (460)
50 4hvc_A Bifunctional glutamate/ 48.7 5.5 0.00019 29.7 1.0 47 10-56 307-363 (519)
51 3ial_A Prolyl-tRNA synthetase; 47.7 4.7 0.00016 30.1 0.4 32 25-56 322-355 (518)
52 3t7y_A YOP proteins translocat 46.7 26 0.0009 20.5 3.6 40 26-65 42-88 (97)
53 2ko1_A CTR148A, GTP pyrophosph 44.5 28 0.00094 18.4 3.3 31 11-42 3-33 (88)
54 2fcj_A Small toprim domain pro 43.6 6.9 0.00024 23.9 0.7 50 16-68 30-79 (119)
55 1h4v_B Histidyl-tRNA synthetas 42.9 18 0.0006 25.3 2.8 36 10-47 327-362 (421)
56 3pid_A UDP-glucose 6-dehydroge 40.8 19 0.00065 26.1 2.8 50 21-70 347-400 (432)
57 3ehd_A Uncharacterized conserv 40.8 30 0.001 21.9 3.4 48 26-73 20-77 (162)
58 2d4p_A Hypothetical protein TT 37.8 14 0.00049 23.0 1.5 30 10-41 64-93 (141)
59 4gqr_A Pancreatic alpha-amylas 37.7 17 0.00059 25.1 2.1 18 28-45 79-96 (496)
60 3bzy_B ESCU; auto cleavage pro 37.4 39 0.0013 19.1 3.3 47 16-65 20-73 (83)
61 2hfv_A Hypothetical protein RP 36.4 28 0.00096 20.5 2.6 30 18-49 27-56 (97)
62 1vd2_A Protein kinase C, IOTA 35.4 24 0.00081 20.4 2.1 22 52-73 56-87 (89)
63 1s2d_A Purine trans deoxyribos 34.1 37 0.0013 21.4 3.1 59 13-73 9-89 (167)
64 2wan_A Pullulanase; hydrolase, 33.8 37 0.0013 26.8 3.6 18 28-45 534-551 (921)
65 4a7p_A UDP-glucose dehydrogena 33.6 42 0.0014 24.3 3.6 51 21-71 337-394 (446)
66 4hlc_A DTMP kinase, thymidylat 33.4 68 0.0023 20.3 4.3 31 14-45 3-35 (205)
67 3c01_E Surface presentation of 32.5 62 0.0021 18.9 3.7 46 17-65 21-73 (98)
68 1dlj_A UDP-glucose dehydrogena 32.2 64 0.0022 22.6 4.3 51 21-71 324-379 (402)
69 1nj8_A Proline-tRNA synthetase 31.3 41 0.0014 24.3 3.2 38 10-48 281-322 (459)
70 3g12_A Putative lactoylglutath 30.3 54 0.0018 18.5 3.1 25 14-43 68-93 (128)
71 3h5l_A Putative branched-chain 29.6 96 0.0033 20.8 4.8 52 18-70 171-222 (419)
72 2fhf_A Pullulanase; multiple d 29.3 46 0.0016 27.0 3.5 36 9-45 556-602 (1083)
73 4edh_A DTMP kinase, thymidylat 28.5 85 0.0029 20.0 4.1 33 13-45 6-40 (213)
74 3dnf_A ISPH, LYTB, 4-hydroxy-3 28.2 78 0.0027 22.1 4.1 41 29-70 44-91 (297)
75 1jdp_A NPR-C, atrial natriuret 28.0 76 0.0026 21.5 4.0 50 14-64 157-209 (441)
76 3ojo_A CAP5O; rossmann fold, c 27.8 74 0.0025 22.9 4.1 51 20-71 329-380 (431)
77 3n0x_A Possible substrate bind 27.6 1.3E+02 0.0044 19.9 5.0 54 13-67 143-196 (374)
78 3sm9_A Mglur3, metabotropic gl 27.6 40 0.0014 23.8 2.6 54 18-72 192-248 (479)
79 1f8y_A Nucleoside 2-deoxyribos 27.1 40 0.0014 21.0 2.3 59 13-73 5-86 (157)
80 1g94_A Alpha-amylase; beta-alp 26.5 37 0.0013 23.9 2.3 17 29-45 68-84 (448)
81 2nn3_C Caspase-1; cysteine pro 26.4 36 0.0012 23.6 2.2 25 15-39 220-244 (310)
82 4go7_X Aspartokinase; transfer 26.1 44 0.0015 21.7 2.4 30 15-44 37-66 (200)
83 3czq_A Putative polyphosphate 25.6 30 0.001 24.1 1.6 32 13-44 86-119 (304)
84 4g6x_A Glyoxalase/bleomycin re 25.5 75 0.0026 18.3 3.3 29 15-48 101-129 (155)
85 3g79_A NDP-N-acetyl-D-galactos 25.4 61 0.0021 23.7 3.3 52 20-71 367-420 (478)
86 3otr_A Enolase; structural gen 25.4 38 0.0013 25.1 2.2 33 10-42 375-407 (452)
87 1tk9_A Phosphoheptose isomeras 25.4 59 0.002 19.5 2.8 27 14-43 115-141 (188)
88 3l55_A B-1,4-endoglucanase/cel 25.3 1.2E+02 0.004 21.0 4.6 40 26-65 305-349 (353)
89 1zpv_A ACT domain protein; str 25.2 84 0.0029 16.6 3.3 29 13-42 5-33 (91)
90 1tuo_A Putative phosphomannomu 25.1 1.8E+02 0.0061 20.8 5.7 55 13-72 50-106 (464)
91 4aie_A Glucan 1,6-alpha-glucos 24.7 42 0.0014 23.7 2.3 36 9-45 61-99 (549)
92 1mxg_A Alpha amylase; hyperthe 24.5 43 0.0015 23.6 2.3 18 28-45 89-106 (435)
93 3fni_A Putative diflavin flavo 24.5 10 0.00035 23.2 -0.9 32 10-44 88-119 (159)
94 3bh4_A Alpha-amylase; calcium, 24.4 42 0.0015 23.7 2.3 17 29-45 82-98 (483)
95 1wpc_A Glucan 1,4-alpha-maltoh 24.4 42 0.0015 23.8 2.3 18 28-45 85-102 (485)
96 1ud2_A Amylase, alpha-amylase; 24.0 44 0.0015 23.7 2.3 18 28-45 83-100 (480)
97 1m72_A Caspase-1; caspase, cys 23.9 27 0.00092 23.6 1.1 24 16-39 193-216 (272)
98 2yva_A DNAA initiator-associat 23.8 65 0.0022 19.6 2.8 27 14-43 114-140 (196)
99 2kps_A Uncharacterized protein 23.8 40 0.0014 19.3 1.7 25 30-54 36-60 (98)
100 1a9x_A Carbamoyl phosphate syn 23.7 96 0.0033 24.7 4.3 55 13-72 944-1014(1073)
101 4gxt_A A conserved functionall 23.7 45 0.0015 23.5 2.2 20 27-46 225-244 (385)
102 2vt1_B Surface presentation of 23.6 49 0.0017 19.2 2.1 46 17-65 21-73 (93)
103 1ua7_A Alpha-amylase; beta-alp 23.6 48 0.0016 23.1 2.4 17 29-45 78-94 (422)
104 2jli_A YSCU, YOP proteins tran 23.6 65 0.0022 19.6 2.7 45 18-65 66-117 (123)
105 1x8d_A Hypothetical protein YI 23.5 55 0.0019 19.1 2.3 16 53-68 23-38 (104)
106 3faw_A Reticulocyte binding pr 23.3 50 0.0017 26.1 2.6 18 28-45 372-389 (877)
107 3bzs_A ESCU; auto cleavage pro 23.3 64 0.0022 20.0 2.7 40 26-65 81-127 (137)
108 2gzs_A IROE protein; enterobac 23.3 64 0.0022 20.8 2.8 35 11-45 196-240 (278)
109 1f9z_A Glyoxalase I; beta-alph 23.2 86 0.0029 17.0 3.1 26 15-45 74-99 (135)
110 1gcy_A Glucan 1,4-alpha-maltot 23.2 46 0.0016 24.1 2.3 32 9-45 75-112 (527)
111 2guy_A Alpha-amylase A; (beta- 23.2 46 0.0016 23.5 2.3 17 29-45 101-117 (478)
112 3sir_A Caspase; hydrolase; 2.6 23.1 26 0.0009 23.4 0.9 23 17-39 184-206 (259)
113 1ht6_A AMY1, alpha-amylase iso 23.0 48 0.0016 23.0 2.3 18 28-45 71-88 (405)
114 2j32_A Caspase-3; Pro-caspase3 23.0 34 0.0012 22.7 1.4 24 15-38 175-198 (250)
115 4as2_A Phosphorylcholine phosp 22.9 48 0.0016 22.9 2.2 18 28-45 148-165 (327)
116 1hvx_A Alpha-amylase; hydrolas 22.6 48 0.0016 23.9 2.3 18 28-45 84-101 (515)
117 1jae_A Alpha-amylase; glycosid 22.3 49 0.0017 23.4 2.3 18 28-45 77-94 (471)
118 1f1j_A Caspase-7 protease; cas 22.2 30 0.001 23.9 1.1 23 17-39 233-255 (305)
119 2jlj_A YSCU, YOP proteins tran 22.2 70 0.0024 20.0 2.7 40 26-65 80-126 (144)
120 1jeo_A MJ1247, hypothetical pr 22.2 84 0.0029 18.8 3.1 27 14-43 87-113 (180)
121 3od5_A Caspase-6; caspase doma 22.2 30 0.001 23.4 1.1 25 15-39 193-217 (278)
122 1lwj_A 4-alpha-glucanotransfer 22.2 50 0.0017 23.1 2.3 18 28-45 72-89 (441)
123 2h8e_A Crossover junction endo 22.0 37 0.0013 19.9 1.3 27 20-49 68-94 (120)
124 3hdp_A Glyoxalase-I; glutathio 21.8 70 0.0024 17.5 2.5 26 15-45 80-105 (133)
125 2yci_X 5-methyltetrahydrofolat 21.6 1.5E+02 0.0052 19.9 4.5 41 24-65 145-191 (271)
126 2xhz_A KDSD, YRBH, arabinose 5 21.5 83 0.0028 18.8 3.0 27 14-43 101-127 (183)
127 2aaa_A Alpha-amylase; glycosid 21.5 55 0.0019 23.2 2.4 17 29-45 101-117 (484)
128 1jjf_A Xylanase Z, endo-1,4-be 21.5 74 0.0025 19.7 2.8 31 14-44 203-233 (268)
129 1wza_A Alpha-amylase A; hydrol 21.3 53 0.0018 23.3 2.3 19 28-46 84-102 (488)
130 4hc5_A Glyoxalase/bleomycin re 21.2 96 0.0033 16.7 3.0 27 14-45 81-107 (133)
131 1nw9_B Caspase 9, apoptosis-re 21.1 31 0.001 23.2 0.9 29 10-38 198-235 (277)
132 4tmk_A Protein (thymidylate ki 20.9 1.4E+02 0.0048 19.0 4.1 29 14-42 4-35 (213)
133 1x92_A APC5045, phosphoheptose 20.9 80 0.0027 19.2 2.8 27 14-43 118-144 (199)
134 2wc7_A Alpha amylase, catalyti 20.9 55 0.0019 23.2 2.3 36 9-45 84-122 (488)
135 4f21_A Carboxylesterase/phosph 20.8 1.7E+02 0.0059 18.6 5.4 52 11-64 183-237 (246)
136 2z1k_A (NEO)pullulanase; hydro 20.8 56 0.0019 23.0 2.3 36 9-45 78-116 (475)
137 3sho_A Transcriptional regulat 20.5 85 0.0029 18.8 2.8 28 14-44 92-119 (187)
138 2re1_A Aspartokinase, alpha an 20.4 72 0.0025 19.4 2.5 30 15-44 27-56 (167)
139 3o21_A Glutamate receptor 3; p 20.3 1.5E+02 0.005 20.0 4.3 47 21-69 139-187 (389)
140 1sfr_A Antigen 85-A; alpha/bet 20.2 94 0.0032 20.1 3.2 34 12-45 206-256 (304)
141 1r88_A MPT51/MPB51 antigen; AL 20.2 96 0.0033 19.8 3.2 35 11-45 198-246 (280)
142 1j23_A HEF nuclease, ATP-depen 20.0 58 0.002 19.8 2.0 32 22-56 10-41 (143)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=5.9e-28 Score=160.96 Aligned_cols=68 Identities=44% Similarity=0.795 Sum_probs=49.1
Q ss_pred CCCCCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 6 SFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 6 ~s~~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
||.+++|||||||||+|+|++|++|||++|+++||++|+|++++++|+.|.++|.+||++||++|+||
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~ 70 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVV 70 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEE
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999999999996
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.94 E-value=1.5e-27 Score=162.30 Aligned_cols=65 Identities=52% Similarity=0.852 Sum_probs=62.9
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
+++|||||||||+|+|++|++|||++|+++||++|+|++++++|+.|.++|.+||++||++||||
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~ 97 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPII 97 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEE
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999996
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.85 E-value=3.9e-22 Score=128.31 Aligned_cols=64 Identities=25% Similarity=0.465 Sum_probs=61.2
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
.++|||||||+++| ++.|+.+|+.+|+++|+++|+|++++.+|+.|.++|.+||++|++.|+||
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~ 81 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVL 81 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEE
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEe
Confidence 58999999999999 66899999999999999999999999999999999999999999999985
No 4
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.74 E-value=1.4e-18 Score=111.70 Aligned_cols=63 Identities=21% Similarity=0.469 Sum_probs=59.3
Q ss_pred CCcccEEeeceeccchhchHHH-HHHHHhcC--CcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSH-LVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~-L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
.+.|||||||+++|+ .|+.+ |+.+|+++ |+++|+|++++.+|+.+.++|.+||++||..|+|+
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~Vl 68 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVL 68 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEe
Confidence 578999999999996 69996 99999986 99999999999999999999999999999999986
No 5
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.73 E-value=2.7e-19 Score=115.14 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=44.5
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhc--CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQ--KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
...|||||||+++|++ |+.+|+.+|++ .|+++|+|++++.+|+.|.++|.+||++||..|+||
T Consensus 8 ~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~Vl 72 (146)
T 3ub2_A 8 SKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLI 72 (146)
T ss_dssp SSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEE
T ss_pred CCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEE
Confidence 7899999999999976 89999999998 599999999999999999999999999999999986
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.70 E-value=8.4e-18 Score=109.30 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=58.3
Q ss_pred CcccEEeeceeccc---------hhchHHHHHH-HHh-cCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 10 CRYDVFLSFRGEDT---------RDNFLSHLVE-ALR-QKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 10 ~~ydVFiSfrg~D~---------r~~f~~~L~~-~L~-~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
..|||||||+++|+ ++.|+.+|+. .|+ +.|+++|+|++++.+|+.|.++|.+||++||..|+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVl 75 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM 75 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEE
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEE
Confidence 36999999999997 5789999886 599 7999999999999999999999999999999999985
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.69 E-value=1.4e-17 Score=110.21 Aligned_cols=63 Identities=21% Similarity=0.426 Sum_probs=58.6
Q ss_pred CCcccEEeeceeccchhchHHH-HHHHHhc--CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSH-LVEALRQ--KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~-L~~~L~~--~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
.+.|||||||+++|+ .|+.+ |+.+|++ +|+++|+|++++.+|+.|.++|.+||++||..|+|+
T Consensus 33 ~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVl 98 (178)
T 2j67_A 33 NVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVL 98 (178)
T ss_dssp SCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEE
T ss_pred CccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEe
Confidence 688999999999995 69975 9999998 899999999999999999999999999999999986
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.66 E-value=3.6e-17 Score=106.38 Aligned_cols=63 Identities=17% Similarity=0.399 Sum_probs=58.9
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhcC--CcceeecccccCCCCCCcHHHHHHHh-hcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIK-ESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~IvVf 73 (73)
.+.|||||||+++| ..|+.+|+.+|+++ |+++|+|++++.+|+.|.++|.++|+ .||..|+|+
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVl 79 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVV 79 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEEC
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEE
Confidence 68899999999999 47999999999985 69999999999999999999999999 699999996
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=97.52 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=58.3
Q ss_pred CCcccEEeeceeccchhchH-HHHHHHHhc-----CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 9 SCRYDVFLSFRGEDTRDNFL-SHLVEALRQ-----KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~-~~L~~~L~~-----~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
.+.|||||||+++|. .|| .+|...|++ .|+++|++++++.+|+.|.++|.+||++||..|+|+
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vl 736 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLV 736 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEE
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEe
Confidence 579999999999995 588 779999985 689999999999999999999999999999999985
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=92.06 E-value=0.074 Score=32.41 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=17.6
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKI 40 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi 40 (73)
..|.|||||..+|.++.|...| .+.|+
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f 29 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERL----EQSGL 29 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHH----HHHCS
T ss_pred ceEEEEEecccHhHHHHHHHHH----hCCCC
Confidence 3689999999999333333333 35566
No 11
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=88.01 E-value=0.57 Score=26.24 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcceeecccccC---CCCCCcHHHHHHHhhcc
Q 035104 28 LSHLVEALRQKKIKSFIDNEELS---RGDGISPSLLKAIKESK 67 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D~~~l~---~G~~i~~~i~~aI~~Sr 67 (73)
+..|...|.++||..|.|.+.+. +-..+++++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677899999999999987774 33468888888777654
No 12
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=81.44 E-value=3.4 Score=26.26 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=36.3
Q ss_pred cEEee--ceeccchhchHHHHHHHHhcCCcceeec---cccc-CCCCC-------CcHHHHHHHhhcceEEEEC
Q 035104 13 DVFLS--FRGEDTRDNFLSHLVEALRQKKIKSFID---NEEL-SRGDG-------ISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 13 dVFiS--frg~D~r~~f~~~L~~~L~~~gi~~f~D---~~~l-~~G~~-------i~~~i~~aI~~Sri~IvVf 73 (73)
-|||+ +++.+....+...+.+.|++.| .|+-. +.++ ++|+. |...-+++|+.|.+.|+++
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l 76 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEV 76 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeC
Confidence 46665 4453333467799999999999 67542 2122 12322 4555578999999988764
No 13
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=81.20 E-value=2.9 Score=25.74 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=37.2
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCcceeec-------------ccccCC---C-C-CCcHHHHHHHhhcceEEEEC
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFID-------------NEELSR---G-D-GISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D-------------~~~l~~---G-~-~i~~~i~~aI~~Sri~IvVf 73 (73)
||||.+..|.. -+-.+.+.|.+.|++.+-- -+.+.+ | + .-.|.|...|++-+|.+||+
T Consensus 27 vliSv~d~dK~--~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVIn 102 (143)
T 2yvq_A 27 ILIGIQQSFRP--RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVIN 102 (143)
T ss_dssp EEEECCGGGHH--HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEE
T ss_pred EEEEecccchH--HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEE
Confidence 99999887643 3456788888888887721 111111 2 2 01157888999999888874
No 14
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=78.26 E-value=9.7 Score=23.83 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=36.9
Q ss_pred cccEEee--ceeccchhchHHHHHHHHhcCCcceeecccc----cCCCCC-------CcHHHHHHHhhcceEEEEC
Q 035104 11 RYDVFLS--FRGEDTRDNFLSHLVEALRQKKIKSFIDNEE----LSRGDG-------ISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 11 ~ydVFiS--frg~D~r~~f~~~L~~~L~~~gi~~f~D~~~----l~~G~~-------i~~~i~~aI~~Sri~IvVf 73 (73)
+..|||+ +.+..-.......+.+.|++.| .++.+..- -+.|.. |...-.+.|++|.+.|+++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~ 85 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV 85 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence 4569987 3322211224588999999999 77654210 112211 2233358999999998864
No 15
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=77.83 E-value=2.7 Score=26.69 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=35.5
Q ss_pred chHHHHHHHHhcCCcceeeccc-ccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104 26 NFLSHLVEALRQKKIKSFIDNE-ELSRGDGISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~f~D~~-~l~~G~~i~~~i~~aI~~Sri~IvVf 73 (73)
.+...+.+.|++.|+.+|.-.+ +..+.+.|...-.++|++|.+.|+++
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~l 75 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADL 75 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 6889999999999998887322 11233445555589999999999874
No 16
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=77.09 E-value=1.7 Score=31.38 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=28.6
Q ss_pred cccEEeecee--ccchhchHHHHHHHHhcCCcceeecccc
Q 035104 11 RYDVFLSFRG--EDTRDNFLSHLVEALRQKKIKSFIDNEE 48 (73)
Q Consensus 11 ~ydVFiSfrg--~D~r~~f~~~L~~~L~~~gi~~f~D~~~ 48 (73)
+++|+|---+ .+.....+..|++.|++.|+.|-+|+++
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~ 404 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTD 404 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 4788776332 2333468899999999999999999863
No 17
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=76.63 E-value=6.9 Score=25.98 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred ccEEeec--------------eeccchhchHHHHHHHHhcCCcceeeccccc----CC----CCCCcHHHHHHHhhcceE
Q 035104 12 YDVFLSF--------------RGEDTRDNFLSHLVEALRQKKIKSFIDNEEL----SR----GDGISPSLLKAIKESKIS 69 (73)
Q Consensus 12 ydVFiSf--------------rg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l----~~----G~~i~~~i~~aI~~Sri~ 69 (73)
--+|++| ..+|.+ ....|..--.+..+-.|.|.+++ .. -..|.+.|-+.|+.|+..
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~Di~--yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v 83 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHDFV--YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI 83 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTTHH--HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred cCcEEEEeccCcccccccCCCccchHH--HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence 3478888 345543 44445544455566778886544 22 345889999999999999
Q ss_pred EEEC
Q 035104 70 VIIF 73 (73)
Q Consensus 70 IvVf 73 (73)
|+++
T Consensus 84 IllI 87 (189)
T 3hyn_A 84 ILFL 87 (189)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8874
No 18
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=75.24 E-value=2.6 Score=29.70 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.6
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
.++||+|---+++. ...+..|++.|++.|+++-+|++
T Consensus 297 ap~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~ 333 (401)
T 1evl_A 297 APVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR 333 (401)
T ss_dssp CSSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC
Confidence 34899877656544 46889999999999999999975
No 19
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=73.94 E-value=3.2 Score=29.43 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=28.9
Q ss_pred cccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 11 ~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
++||+|-.-+++.. ..+..|++.|+++|+.+-+|++
T Consensus 332 p~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~v~~d~~ 367 (434)
T 1wu7_A 332 KKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM 367 (434)
T ss_dssp SCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS
T ss_pred CCcEEEEEcChHHH-HHHHHHHHHHHHCCCeEEEecC
Confidence 48998766565543 5788999999999999999874
No 20
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=70.62 E-value=1.7 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.1
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||.+....-|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 5678888888889999999998754
No 21
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=69.55 E-value=3.3 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=29.5
Q ss_pred CcccEEeece-e-cc--chhchHHHHHHHHhcCCcceeecccc
Q 035104 10 CRYDVFLSFR-G-ED--TRDNFLSHLVEALRQKKIKSFIDNEE 48 (73)
Q Consensus 10 ~~ydVFiSfr-g-~D--~r~~f~~~L~~~L~~~gi~~f~D~~~ 48 (73)
.+|+|+|--- + ++ .-...+..|++.|+++||++-+|+++
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~ 355 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRD 355 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCS
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4588876544 3 31 34568899999999999999999864
No 22
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=68.70 E-value=3 Score=29.25 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=28.6
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
.++||+|-.-+++. ...+..+++.|+++|+.+-+|++
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~ 364 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL 364 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC
Confidence 34789877555443 35778999999999999999874
No 23
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=68.01 E-value=7.5 Score=24.69 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=26.1
Q ss_pred Eeeceeccc--hhchHHHHHHHHhcCCcceeecc
Q 035104 15 FLSFRGEDT--RDNFLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 15 FiSfrg~D~--r~~f~~~L~~~L~~~gi~~f~D~ 46 (73)
||.|-|.|. +.+-+..|.+.|+++|+.+..-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 888988886 45677899999999999886543
No 24
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=67.12 E-value=2 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.5
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||..+...-|+..|.+.|++.|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 5567788777789999999998755
No 25
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=66.28 E-value=1.9 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=20.0
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||..+...-|+..|.+.|++.|
T Consensus 25 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 25 CVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred cEEEecCCCCcHHHHHHHHHHHHhC
Confidence 4567777777789999999998754
No 26
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=66.10 E-value=5 Score=29.35 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=28.9
Q ss_pred CcccEEeeceec-c---chhchHHHHHHHHhcCCcceeeccc
Q 035104 10 CRYDVFLSFRGE-D---TRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~-D---~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
.+++|+|---++ | .-...+..|++.|++.||++-+|++
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 327 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR 327 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 347887765443 2 2346789999999999999999985
No 27
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=65.87 E-value=7.4 Score=28.77 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=21.8
Q ss_pred cchhchHHHHHHHHhcCCccee--eccc
Q 035104 22 DTRDNFLSHLVEALRQKKIKSF--IDNE 47 (73)
Q Consensus 22 D~r~~f~~~L~~~L~~~gi~~f--~D~~ 47 (73)
|.-...+..|++.|++.||.+. +|++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr 388 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLET 388 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSS
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCC
Confidence 4455789999999999999998 6764
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=64.58 E-value=2.4 Score=24.97 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.1
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||.+....-|+..|.+.|++.|
T Consensus 29 ~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 29 YYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 4567787777789999999998754
No 29
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=64.57 E-value=6.2 Score=29.92 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCcccEEeeceeccchhc----------hHHHHHHHHhcCCcceeec
Q 035104 9 SCRYDVFLSFRGEDTRDN----------FLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~----------f~~~L~~~L~~~gi~~f~D 45 (73)
.|.||+. +|...+-+.+ =...|.++++++||+|.+|
T Consensus 353 ~WGYd~~-~y~a~~~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlD 398 (884)
T 4aio_A 353 NWGYNPV-LWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMD 398 (884)
T ss_dssp CCCCCEE-EEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCcCcc-cccCCCcccccCccccchHHHHHHHHHHHHhcCCceeee
Confidence 5889984 3444443322 1568999999999999999
No 30
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=64.53 E-value=17 Score=26.17 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=29.7
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
..+||+|-.-+++.. ..+-.+++.|+++|+++-+|.+
T Consensus 370 ~p~~V~Vi~~~~~~~-~~A~~la~~LR~~Gi~ve~d~~ 406 (465)
T 3net_A 370 TPAQVVVVNMQDELM-PTYLKVSQQLRQAGLNVITNFE 406 (465)
T ss_dssp CSCCEEECCSCGGGH-HHHHHHHHHHHHTTCCEEECCS
T ss_pred CCCeEEEEEcCHHHH-HHHHHHHHHHHHCCCEEEEEeC
Confidence 357999766566654 5788999999999999999865
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=64.16 E-value=4.5 Score=28.41 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=29.3
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcC--Ccceeeccc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQK--KIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~--gi~~f~D~~ 47 (73)
.++||+|-.-+++. ...+..|++.|+++ |+.+-+|++
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~ 364 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG 364 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC
Confidence 34789887766543 35788999999999 999999875
No 32
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=62.82 E-value=4.4 Score=29.81 Aligned_cols=58 Identities=7% Similarity=0.189 Sum_probs=36.5
Q ss_pred cccEEeecee-c-cchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHH-hhcceEEEE
Q 035104 11 RYDVFLSFRG-E-DTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAI-KESKISVII 72 (73)
Q Consensus 11 ~ydVFiSfrg-~-D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI-~~Sri~IvV 72 (73)
+++|+|---+ + +.-...+..|++.|++.|+++-+|++. .++...+-.|- .+.+..|+|
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iiv 530 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITV 530 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEE
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEE
Confidence 3789776444 1 223467889999999999999999753 34444443332 234444443
No 33
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=62.55 E-value=15 Score=22.76 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=38.4
Q ss_pred CCCCcccE-EeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHH-hhcceEEEE
Q 035104 7 FSSCRYDV-FLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAI-KESKISVII 72 (73)
Q Consensus 7 s~~~~ydV-FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI-~~Sri~IvV 72 (73)
+..++.+| .|.-.. .-..++..+...|...||++=+|.. ..++.|...|-+|- ++....|||
T Consensus 4 ~~~~P~Qv~IlpVs~--~~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 4 GSSGPVDCSVIVVNK--QTKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCCCCCTEEEEESSS--GGGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCCeEEEEEeCc--chHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 33455565 444532 2357999999999999999988763 12566665554433 234444444
No 34
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=62.16 E-value=2.8 Score=24.74 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=20.4
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||..+...-|+..|++.|++.+
T Consensus 27 ~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 27 TAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHC
Confidence 5567888777889999999998754
No 35
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=61.41 E-value=24 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecc
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~ 46 (73)
....||++.--+++.. .-+-.|+..|+++||++=+|.
T Consensus 364 ~~~~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~~ 400 (464)
T 4g84_A 364 TTETQVLVASAQKKLL-EERLKLVSELWDAGIKAELLY 400 (464)
T ss_dssp SCCCCEEEECSSSSCH-HHHHHHHHHHHHTTCCEECCS
T ss_pred cccceEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEEe
Confidence 3467899988777654 456789999999999997664
No 36
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=61.02 E-value=15 Score=26.43 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=27.8
Q ss_pred cccEEeeceec-----cchhchHHHHHHHHhcCCcceeecc
Q 035104 11 RYDVFLSFRGE-----DTRDNFLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 11 ~ydVFiSfrg~-----D~r~~f~~~L~~~L~~~gi~~f~D~ 46 (73)
+++|+|---+. +.....+..|++.|+++|++|-+|+
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~ 378 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKG 378 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 47887765551 2334678999999999999999998
No 37
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=60.56 E-value=5.6 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.4
Q ss_pred cccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 11 ~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
+++|+|---+.+.....+..|++.|+++|+++-+|++
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~ 581 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR 581 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4788765444233456889999999999999999985
No 38
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=60.46 E-value=4.7 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=16.2
Q ss_pred chHHHHHHHHhcCCcce
Q 035104 26 NFLSHLVEALRQKKIKS 42 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~ 42 (73)
.|++.|...|+++||++
T Consensus 10 ~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 10 RYVEQLKQALKTRGVKV 26 (94)
T ss_pred HHHHHHHHHHHHcCeee
Confidence 59999999999999999
No 39
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=60.07 E-value=5.5 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.8
Q ss_pred cccEEeeceeccchhchHHHHHHHHhcCCcceeecccc
Q 035104 11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEE 48 (73)
Q Consensus 11 ~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~ 48 (73)
+++|+|---+++ -...+..|++.|+++||++-+|+++
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~ 575 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN 575 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 578876544443 3568899999999999999999853
No 40
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=58.05 E-value=4 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEeeceeccchhchHHHHHHHHhcCC
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
-|.|||.+....-|+..|++.|++.+
T Consensus 27 G~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 27 GYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 35667888777789999999998754
No 41
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=58.04 E-value=33 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=28.9
Q ss_pred CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecc
Q 035104 9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~ 46 (73)
....||++.--+++.. ..+-.|+..|+++||++=+|.
T Consensus 417 ~~~~~V~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~~ 453 (517)
T 4g85_A 417 TTETQVLVASAQKKLL-EERLKLVSELWDAGIKAELLY 453 (517)
T ss_dssp SCCCCEEEEESSSSCH-HHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEEe
Confidence 4568999887666654 467799999999999997664
No 42
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=56.97 E-value=6 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.2
Q ss_pred hchHHHHHHHHhcCCcceee
Q 035104 25 DNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 25 ~~f~~~L~~~L~~~gi~~f~ 44 (73)
..|++.|...|+++||++=.
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHHCCeeecH
Confidence 46999999999999998843
No 43
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=55.40 E-value=11 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=29.1
Q ss_pred cccEEeeceecc-chhchHHHHHHHHhcCCcceeeccc
Q 035104 11 RYDVFLSFRGED-TRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 11 ~ydVFiSfrg~D-~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
+++|+|---+++ .-...+..|++.|++.||.+-+|++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~ 596 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS 596 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 478987655543 2346889999999999999999974
No 44
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=53.11 E-value=36 Score=24.59 Aligned_cols=36 Identities=17% Similarity=-0.028 Sum_probs=28.5
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeecc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~ 46 (73)
...||++..-+++.+ .-+-.+...|+++|+++-+|.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~ 395 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIIL 395 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEec
Confidence 457898877777654 456789999999999998875
No 45
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=52.89 E-value=9 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.3
Q ss_pred cccEEee-cee-ccchhchHHHHHHHHhcCCccee--eccc
Q 035104 11 RYDVFLS-FRG-EDTRDNFLSHLVEALRQKKIKSF--IDNE 47 (73)
Q Consensus 11 ~ydVFiS-frg-~D~r~~f~~~L~~~L~~~gi~~f--~D~~ 47 (73)
+++|.|- -.+ ++.-...+..|++.|+++||++- +|++
T Consensus 338 P~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr 378 (454)
T 1g5h_A 338 PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSET 378 (454)
T ss_dssp SCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3788776 443 23345688999999999999994 7763
No 46
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=51.65 E-value=5.1 Score=24.25 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=21.1
Q ss_pred cEEeeceeccchhchHHHHHHHHhcCC
Q 035104 13 DVFLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 13 dVFiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
+-|.|||.+....-|+..|++.|++.+
T Consensus 26 pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 26 KGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp TTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCeECeeecCCCChHHHHHHHHHHHhC
Confidence 345667887777889999999998764
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=50.61 E-value=30 Score=25.00 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=39.1
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeecccc-cCCCCCCcHHHHHHHh-hcceEEEE
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEE-LSRGDGISPSLLKAIK-ESKISVII 72 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~-l~~G~~i~~~i~~aI~-~Sri~IvV 72 (73)
...||+|-.-+++. ...+-.+.+.|+++|++|-+|... + .+.++...+-.|-+ +.+..|+|
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~-~~~sl~kq~~~A~~~g~~~~iii 415 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADG-AGASFKSQMKRADASGAAFAVIF 415 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTS-SCCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEccccc-ccCCHHHHHHHHHHcCCCEEEEE
Confidence 34789876656554 357889999999999999998641 1 14556555544432 34445443
No 48
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=49.97 E-value=12 Score=27.50 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=28.5
Q ss_pred cccEEeeceec--cchhchHHHHHHHHhcCC-cceeeccc
Q 035104 11 RYDVFLSFRGE--DTRDNFLSHLVEALRQKK-IKSFIDNE 47 (73)
Q Consensus 11 ~ydVFiSfrg~--D~r~~f~~~L~~~L~~~g-i~~f~D~~ 47 (73)
+++|+|---++ +.-...+..|++.|++.| +++.+|+.
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~ 437 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT 437 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC
Confidence 58998765454 123468899999999999 99999874
No 49
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=49.05 E-value=15 Score=26.72 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=29.9
Q ss_pred cccEEeeceecc--chhchHHHHHHHHhcC--------------CcceeecccccCCCC
Q 035104 11 RYDVFLSFRGED--TRDNFLSHLVEALRQK--------------KIKSFIDNEELSRGD 53 (73)
Q Consensus 11 ~ydVFiSfrg~D--~r~~f~~~L~~~L~~~--------------gi~~f~D~~~l~~G~ 53 (73)
.++|+|---+++ .-...+..|++.|++. ||++-+|+++-..|.
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~ 403 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGY 403 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHH
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHH
Confidence 478866543443 1346889999999998 999999986433333
No 50
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=48.67 E-value=5.5 Score=29.70 Aligned_cols=47 Identities=15% Similarity=0.002 Sum_probs=32.2
Q ss_pred CcccEEeeceec---------cchhchHHHHHHHHhcCCcceeeccccc-CCCCCCc
Q 035104 10 CRYDVFLSFRGE---------DTRDNFLSHLVEALRQKKIKSFIDNEEL-SRGDGIS 56 (73)
Q Consensus 10 ~~ydVFiSfrg~---------D~r~~f~~~L~~~L~~~gi~~f~D~~~l-~~G~~i~ 56 (73)
.+++|.|-=-+. +.-...+..|++.|++.||++-+|+++- .+|..+.
T Consensus 307 aP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 307 ACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp CSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred CCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 457886643231 2234678999999999999999998752 4555443
No 51
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=47.72 E-value=4.7 Score=30.14 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.7
Q ss_pred hchHHHHHHHHhcC-Ccceeeccc-ccCCCCCCc
Q 035104 25 DNFLSHLVEALRQK-KIKSFIDNE-ELSRGDGIS 56 (73)
Q Consensus 25 ~~f~~~L~~~L~~~-gi~~f~D~~-~l~~G~~i~ 56 (73)
...+..|++.|.+. ||++.+|++ +-.+|..+.
T Consensus 322 ~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~ 355 (518)
T 3ial_A 322 LGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLY 355 (518)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHH
Confidence 46789999999999 999999987 555665543
No 52
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=46.68 E-value=26 Score=20.53 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=32.8
Q ss_pred chHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 26 NFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
..+..+.+.-+++||.+.-|. +.++.|+.|.+++.+++-+
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~LAr~L~~~~~ig~~IP~ely~aVAe 88 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGE 88 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCBTSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEECHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 467888888899999999883 2467899999999998754
No 53
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=44.49 E-value=28 Score=18.38 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=26.0
Q ss_pred cccEEeeceeccchhchHHHHHHHHhcCCcce
Q 035104 11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42 (73)
Q Consensus 11 ~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~ 42 (73)
.|.+.|....+| |.+.+..+...|.+.|+++
T Consensus 3 ~~~~~l~v~~~D-r~G~L~~I~~~la~~~inI 33 (88)
T 2ko1_A 3 DFLAGIRIVGED-KNGMTNQITGVISKFDTNI 33 (88)
T ss_dssp CEEEEEEEEEEC-CTTHHHHHHHHHTTSSSCE
T ss_pred cEEEEEEEEEEC-CCcHHHHHHHHHHHCCCCe
Confidence 367778888888 4589999999999999876
No 54
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=43.60 E-value=6.9 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=33.1
Q ss_pred eeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcce
Q 035104 16 LSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKI 68 (73)
Q Consensus 16 iSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri 68 (73)
|.-.|. ....-...|..+.+.+|+-+|.|.+ ..|+.|...|.+.+.+++.
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D--~~GekIRk~i~~~lp~~~h 79 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD--EAGEKLRRQFRRMFPEAEH 79 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS--HHHHHHHHHHHHHCTTSEE
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC--ccHHHHHHHHHHHCCCCcE
Confidence 444454 3333445667777788999998865 3678887777777766543
No 55
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=42.87 E-value=18 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=27.6
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceeeccc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNE 47 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~ 47 (73)
.++||+|-.-+++. ...+..|++.|+++ +.+-+|++
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~ 362 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALA 362 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecC
Confidence 35789885555543 35788999999999 99998874
No 56
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=40.81 E-value=19 Score=26.14 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=33.1
Q ss_pred ccchhchHHHHHHHHhcCCcceeecccccC----CCCCCcHHHHHHHhhcceEE
Q 035104 21 EDTRDNFLSHLVEALRQKKIKSFIDNEELS----RGDGISPSLLKAIKESKISV 70 (73)
Q Consensus 21 ~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~----~G~~i~~~i~~aI~~Sri~I 70 (73)
+|.|.+=+-.|.+.|.++|..+-+-|-... .|..+...+.++++++.+.|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 588999899999999999998877443332 23334457889999998755
No 57
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=40.78 E-value=30 Score=21.86 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcC--Ccceeeccccc----CCCC----CCcHHHHHHHhhcceEEEEC
Q 035104 26 NFLSHLVEALRQK--KIKSFIDNEEL----SRGD----GISPSLLKAIKESKISVIIF 73 (73)
Q Consensus 26 ~f~~~L~~~L~~~--gi~~f~D~~~l----~~G~----~i~~~i~~aI~~Sri~IvVf 73 (73)
.+...+.++|+++ |+.+|.=.+.- +++. .|...-.++|++|.+.|+++
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~l 77 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALL 77 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEEC
Confidence 4788899999875 88888632111 1222 23444457899999998875
No 58
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=37.82 E-value=14 Score=23.02 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=26.7
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcc
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIK 41 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~ 41 (73)
+-||++ ||+....+..+.+..+.+.+.|+.
T Consensus 64 ~L~dl~--~R~~GIG~~Ll~~a~~~a~~~G~~ 93 (141)
T 2d4p_A 64 LVTRIE--GRSVEALRGLLRAVVKSAYDAGVY 93 (141)
T ss_dssp EEEEEE--ESSHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeHHh--hccccHHHHHHHHHHHHHHHCCCC
Confidence 568898 999999999999999999999964
No 59
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=37.73 E-value=17 Score=25.08 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||+|.+|
T Consensus 79 f~~lv~~aH~~Gi~VilD 96 (496)
T 4gqr_A 79 FRNMVTRCNNVGVRIYVD 96 (496)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 368999999999999998
No 60
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=37.41 E-value=39 Score=19.11 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=36.0
Q ss_pred eeceeccchhchHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 16 LSFRGEDTRDNFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 16 iSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
+.-.|.| ..+..+.+.-+++||.+.-|. ...+.|+.|.+++.+++-+
T Consensus 20 VvAKG~~---~~A~~I~~~A~e~~VPi~e~~~LAr~L~~~~~ig~~IP~ely~aVAe 73 (83)
T 3bzy_B 20 VIETGKD---AKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPVAQ 73 (83)
T ss_dssp EEEEEET---HHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHHHH
T ss_pred EEEEeCc---HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 3345655 467888888899999999883 2467899999999998754
No 61
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=36.43 E-value=28 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=22.1
Q ss_pred ceeccchhchHHHHHHHHhcCCcceeeccccc
Q 035104 18 FRGEDTRDNFLSHLVEALRQKKIKSFIDNEEL 49 (73)
Q Consensus 18 frg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l 49 (73)
+|..|. .-+.++...|+..||.+|+-++.+
T Consensus 27 ~ra~d~--v~a~~~k~LLe~aGI~~fv~De~m 56 (97)
T 2hfv_A 27 LRTNDA--VLLSAVGALLDGADIGHLVLDQNM 56 (97)
T ss_dssp EEECCH--HHHHHHHHHHHHTTCCEECCSCCC
T ss_pred eecCCH--HHHHHHHHHHHhCCCCEEEcCCcc
Confidence 456663 356777777888999999988655
No 62
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=35.41 E-value=24 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.5
Q ss_pred CCCC----cHHHHHHHh------hcceEEEEC
Q 035104 52 GDGI----SPSLLKAIK------ESKISVIIF 73 (73)
Q Consensus 52 G~~i----~~~i~~aI~------~Sri~IvVf 73 (73)
|+.+ ..+|.+|++ ++.+.|-||
T Consensus 56 GD~itisSd~EL~eAl~l~~~n~~~~l~ihvf 87 (89)
T 1vd2_A 56 GDPCTVSSQLELEEAFRLYELNKDSELLIHVF 87 (89)
T ss_dssp SCCEECCSHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred CCcccccCHHHHHHHHHHHHccCCCCEEEEEc
Confidence 8864 367888887 678888776
No 63
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=34.11 E-value=37 Score=21.36 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=37.4
Q ss_pred cEEee---ceeccchhchHHHHHHHHhcC--Ccceeecccc-c--------CCC--------CCCcHHHHHHHhhcceEE
Q 035104 13 DVFLS---FRGEDTRDNFLSHLVEALRQK--KIKSFIDNEE-L--------SRG--------DGISPSLLKAIKESKISV 70 (73)
Q Consensus 13 dVFiS---frg~D~r~~f~~~L~~~L~~~--gi~~f~D~~~-l--------~~G--------~~i~~~i~~aI~~Sri~I 70 (73)
-|||. |+..+ ..+...+.+.|++. |+.+|.=.++ . +.| ..|...-.++|++|.+.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 35655 43333 35889999999999 8888863221 1 111 123445568899999988
Q ss_pred EEC
Q 035104 71 IIF 73 (73)
Q Consensus 71 vVf 73 (73)
+++
T Consensus 87 A~l 89 (167)
T 1s2d_A 87 FLY 89 (167)
T ss_dssp EEE
T ss_pred EEC
Confidence 863
No 64
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=33.75 E-value=37 Score=26.76 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||.|.+|
T Consensus 534 fk~LV~~aH~~GI~VILD 551 (921)
T 2wan_A 534 LKQLIQSLHQQRIGVNMD 551 (921)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 468999999999999999
No 65
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=33.61 E-value=42 Score=24.27 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=37.2
Q ss_pred ccchhchHHHHHHHHhcCCcceeecccccC-------CCCCCcHHHHHHHhhcceEEE
Q 035104 21 EDTRDNFLSHLVEALRQKKIKSFIDNEELS-------RGDGISPSLLKAIKESKISVI 71 (73)
Q Consensus 21 ~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~-------~G~~i~~~i~~aI~~Sri~Iv 71 (73)
+|+|.+=+-.|.+.|.++|..+..-|-... ++-.+.+.+.++++++...|+
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi 394 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVI 394 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEE
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEE
Confidence 588999899999999999988877442221 243444566788888887665
No 66
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=33.43 E-value=68 Score=20.27 Aligned_cols=31 Identities=16% Similarity=0.457 Sum_probs=23.7
Q ss_pred EEeeceeccc--hhchHHHHHHHHhcCCcceeec
Q 035104 14 VFLSFRGEDT--RDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 14 VFiSfrg~D~--r~~f~~~L~~~L~~~gi~~f~D 45 (73)
-||.|-|.|. +.+.+..|.+.|. +|..+..-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 3899998886 4567788999996 58877654
No 67
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=32.46 E-value=62 Score=18.91 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=35.2
Q ss_pred eceeccchhchHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 17 SFRGEDTRDNFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 17 Sfrg~D~r~~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
.-.|.| ..+..+.+.-+++||.+.-|. ..++.|+.|.+++.+|+-+
T Consensus 21 vAKG~~---~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 73 (98)
T 3c01_E 21 SVYETN---QRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLR 73 (98)
T ss_dssp EEEEEH---HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTCBCCHHHHHHHHH
T ss_pred EEEeCc---HHHHHHHHHHHHcCCCeecCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 344555 367788888899999998883 2467899999999998754
No 68
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=32.22 E-value=64 Score=22.57 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=35.5
Q ss_pred ccchhchHHHHHHHHhcCCcceeecccccCCCCC-----CcHHHHHHHhhcceEEE
Q 035104 21 EDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDG-----ISPSLLKAIKESKISVI 71 (73)
Q Consensus 21 ~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~-----i~~~i~~aI~~Sri~Iv 71 (73)
+|.|.+=+-.|.+.|.++|..+..-|-.++.... +.+.+.++++++...|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 5889999999999999999988764433433211 12346677888876654
No 69
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=31.35 E-value=41 Score=24.26 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.1
Q ss_pred CcccEEeece-e-c--cchhchHHHHHHHHhcCCcceeecccc
Q 035104 10 CRYDVFLSFR-G-E--DTRDNFLSHLVEALRQKKIKSFIDNEE 48 (73)
Q Consensus 10 ~~ydVFiSfr-g-~--D~r~~f~~~L~~~L~~~gi~~f~D~~~ 48 (73)
.+++|+|--- + + +.-...+..|++.|++. |+|-+|+++
T Consensus 281 aP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~ 322 (459)
T 1nj8_A 281 APIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRD 322 (459)
T ss_dssp CSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSC
T ss_pred CCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCC
Confidence 3478877644 3 3 13456889999999999 999999863
No 70
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=30.33 E-value=54 Score=18.48 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.1
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCcc-ee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIK-SF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~-~f 43 (73)
+-+.|.-+| +..+++.|.++|+. +.
T Consensus 68 ~~l~f~v~d-----vd~~~~~l~~~G~~~~~ 93 (128)
T 3g12_A 68 LQLGFQITD-----LEKTVQELVKIPGAMCI 93 (128)
T ss_dssp EEEEEEESC-----HHHHHHHHTTSTTCEEE
T ss_pred eEEEEEeCC-----HHHHHHHHHHCCCceec
Confidence 456777776 67999999999998 44
No 71
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=29.61 E-value=96 Score=20.81 Aligned_cols=52 Identities=6% Similarity=-0.112 Sum_probs=32.1
Q ss_pred ceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEE
Q 035104 18 FRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISV 70 (73)
Q Consensus 18 frg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~I 70 (73)
+...+-.......+.+.|++.|+.+-..+ ...+|+.=...+++.|+.++.-+
T Consensus 171 ~~~~~~g~~~~~~~~~~~~~~g~~vv~~~-~~~~~~~d~~~~l~~i~~~~~d~ 222 (419)
T 3h5l_A 171 TGPGIYSVNIANAIRDGAGEYGYDVSLFE-TVAIPVSDWGPTLAKLRADPPAV 222 (419)
T ss_dssp ECSSHHHHHHHHHHHHHGGGGTCEEEEEE-ECCSSCSCCHHHHHHHHHSCCSE
T ss_pred EcCcchhHHHHHHHHHHHHHcCCeEEEEe-cCCCCCccHHHHHHHHHhcCCCE
Confidence 33333345677788888899998875443 35566433346667777765533
No 72
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=29.32 E-value=46 Score=26.99 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=24.5
Q ss_pred CCcccEEeeceeccchhc----------hHHHHHHHHhcC-Ccceeec
Q 035104 9 SCRYDVFLSFRGEDTRDN----------FLSHLVEALRQK-KIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~----------f~~~L~~~L~~~-gi~~f~D 45 (73)
+|.||+ ..|...|.+.+ =...|.++|+++ ||.|.+|
T Consensus 556 nwGYd~-~~y~a~~~~yGt~p~~~~r~~efk~LV~~~H~~~GI~VILD 602 (1083)
T 2fhf_A 556 NWGYDP-FHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMD 602 (1083)
T ss_dssp CCCCCE-EEEEEECSTTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CCCCCc-CcCCCcChhhcCCCCccccHHHHHHHHHHHHhhcCCEEEEE
Confidence 488998 33333333221 236799999988 9999999
No 73
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=28.52 E-value=85 Score=19.98 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.9
Q ss_pred cEEeeceeccc--hhchHHHHHHHHhcCCcceeec
Q 035104 13 DVFLSFRGEDT--RDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 13 dVFiSfrg~D~--r~~f~~~L~~~L~~~gi~~f~D 45 (73)
-.||.+.|.|. +.+.+..|.+.|..+|+.+..-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 36888888775 4567899999999999887544
No 74
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=28.18 E-value=78 Score=22.10 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCcceeecccccCCCCC-------CcHHHHHHHhhcceEE
Q 035104 29 SHLVEALRQKKIKSFIDNEELSRGDG-------ISPSLLKAIKESKISV 70 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D~~~l~~G~~-------i~~~i~~aI~~Sri~I 70 (73)
.+..+.|+++|+.+ +|++++..|+. ++++..+..++-.+-|
T Consensus 44 ~~Vv~~L~~~Gv~~-v~~~ev~~g~~VIirAHGv~~~v~~~a~~rgl~i 91 (297)
T 3dnf_A 44 PQEVNRLKNLGVFP-SQGEEFKEGDTVIIRSHGIPPEKEEALRKKGLKV 91 (297)
T ss_dssp HHHHHHHHHHTEEE-CCSSCCCTTCEEEECTTCCCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEE-echhhCCCCCEEEEECCCCCHHHHHHHHHCCCEE
Confidence 36678899999854 55567777753 5777777777665544
No 75
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=28.02 E-value=76 Score=21.54 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=27.0
Q ss_pred EEeeceeccchhc---hHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHh
Q 035104 14 VFLSFRGEDTRDN---FLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64 (73)
Q Consensus 14 VFiSfrg~D~r~~---f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~ 64 (73)
|.+=+...+..+. ++..|.+.|++.|+.+-... -...++.-...+++.|+
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~d~~~~l~~i~ 209 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYS-FDETKDLDLEDIVRNIQ 209 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEE-ECTTSCCCHHHHHHHHH
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEE-ecCCcccCHHHHHHHhh
Confidence 3333333444445 77888888888887663322 12223222345666665
No 76
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=27.82 E-value=74 Score=22.94 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=36.6
Q ss_pred eccchhchHHHHHHHHhcC-CcceeecccccCCCCCCcHHHHHHHhhcceEEE
Q 035104 20 GEDTRDNFLSHLVEALRQK-KIKSFIDNEELSRGDGISPSLLKAIKESKISVI 71 (73)
Q Consensus 20 g~D~r~~f~~~L~~~L~~~-gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~Iv 71 (73)
-+|+|++=+-.|.+.|.++ |..+..-|-..... .....+.++++++...|+
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi 380 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLI 380 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEE
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEE
Confidence 3688999999999999999 98887755333322 223355678888887665
No 77
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=27.59 E-value=1.3e+02 Score=19.87 Aligned_cols=54 Identities=6% Similarity=-0.068 Sum_probs=33.7
Q ss_pred cEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcc
Q 035104 13 DVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESK 67 (73)
Q Consensus 13 dVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sr 67 (73)
.|.+=+...+........+.++|++.|+.+-... ...+|+.=...+++.|+.++
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~-~~~~~~~d~~~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEE-YVPTTTTDFTAVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEE-EECTTCCCCHHHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeee-cCCCCCccHHHHHHHHHhcC
Confidence 3544444444445677888888888998775443 35556433346677777766
No 78
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=27.59 E-value=40 Score=23.84 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=32.7
Q ss_pred ceeccchhchHHHHHHHHhcCCcceeecccccCCC---CCCcHHHHHHHhhcceEEEE
Q 035104 18 FRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRG---DGISPSLLKAIKESKISVII 72 (73)
Q Consensus 18 frg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G---~~i~~~i~~aI~~Sri~IvV 72 (73)
+...|....++..|.+++++.|+.+-..+ .+..+ ..+...+.+.|++|+.-+||
T Consensus 192 ~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~-~i~~~~~~~d~~~~l~~~i~~s~a~vIi 248 (479)
T 3sm9_A 192 ASEGDYGETGIEAFEQEARLRNISIATAE-KVGRSNIRKSYDSVIRELLQKPNARVVV 248 (479)
T ss_dssp EESSHHHHHHHHHHHHHHHTTTCEEEEEE-EECC--CHHHHHHHHHHHHTCTTCCEEE
T ss_pred EecchhhHHHHHHHHHHHHHCCceEEEEE-EcCCCCChHHHHHHHHHHHhcCCCeEEE
Confidence 34455566789999999999998764443 24432 22333333677776654443
No 79
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.15 E-value=40 Score=20.95 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=36.8
Q ss_pred cEEee---ceeccchhchHHHHHHHHhcCCc----ceeecccccC---------C---C----CCCcHHHHHHHhhcceE
Q 035104 13 DVFLS---FRGEDTRDNFLSHLVEALRQKKI----KSFIDNEELS---------R---G----DGISPSLLKAIKESKIS 69 (73)
Q Consensus 13 dVFiS---frg~D~r~~f~~~L~~~L~~~gi----~~f~D~~~l~---------~---G----~~i~~~i~~aI~~Sri~ 69 (73)
-||+. |+... ......+.++|++.|. .+|.-.++-. . + ..|...-.++|++|.+.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 35555 43333 3588999999999985 6766322111 1 1 23344456889999998
Q ss_pred EEEC
Q 035104 70 VIIF 73 (73)
Q Consensus 70 IvVf 73 (73)
|+++
T Consensus 83 vA~l 86 (157)
T 1f8y_A 83 LGVY 86 (157)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8874
No 80
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=26.55 E-value=37 Score=23.91 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCcceeec
Q 035104 29 SHLVEALRQKKIKSFID 45 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D 45 (73)
..|.++++++||++.+|
T Consensus 68 k~Lv~~aH~~Gi~VilD 84 (448)
T 1g94_A 68 IDMVNRCSAAGVDIYVD 84 (448)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 68899999999999998
No 81
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.45 E-value=36 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=19.0
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||+.....-|+..|.+.|.+.|
T Consensus 220 ~vS~R~~~~GSwFIqaL~~~l~~~~ 244 (310)
T 2nn3_C 220 YFSWRNTTRGSWFMQALCEELRYAG 244 (310)
T ss_dssp EEESSSSEEEEHHHHHHHHHHHTTT
T ss_pred ceeecCCCCCCHHHHHHHHHHHhhC
Confidence 3456666666679999999999865
No 82
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=26.13 E-value=44 Score=21.71 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=23.1
Q ss_pred EeeceeccchhchHHHHHHHHhcCCcceee
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~ 44 (73)
-|+-+|-..+.+|+..+...|.++||++=+
T Consensus 37 ~Iti~g~~~~pG~aa~IF~~La~~~InVDm 66 (200)
T 4go7_X 37 KVTIVGLPDIPGYAAKVFRAVADADVNIDM 66 (200)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCC
T ss_pred EEEEecCCCCccHHHHHHHHHHHhCcceEE
Confidence 344455545679999999999999998844
No 83
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=25.64 E-value=30 Score=24.13 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=26.1
Q ss_pred cEEeeceeccc--hhchHHHHHHHHhcCCcceee
Q 035104 13 DVFLSFRGEDT--RDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 13 dVFiSfrg~D~--r~~f~~~L~~~L~~~gi~~f~ 44 (73)
-|||-|-|-|. +-+-+.+|.+.|..+|++|..
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~ 119 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA 119 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 48999998886 456778999999999987765
No 84
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=25.55 E-value=75 Score=18.32 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=20.9
Q ss_pred EeeceeccchhchHHHHHHHHhcCCcceeecccc
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEE 48 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~ 48 (73)
.++|.-+| +..++++|.++|+.+.....+
T Consensus 101 ~l~f~VdD-----vda~~~~l~~~Gv~~~~~p~~ 129 (155)
T 4g6x_A 101 AASFAVDD-----IAAEYERLSALGVRFTQEPTD 129 (155)
T ss_dssp SEEEEESC-----HHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEeeech-----hhhhhhHHhcCCcEEeeCCEE
Confidence 45666666 468899999999987655433
No 85
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=25.41 E-value=61 Score=23.72 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=37.4
Q ss_pred eccchhchHHHHHHHHhcCCcceeecccccC--CCCCCcHHHHHHHhhcceEEE
Q 035104 20 GEDTRDNFLSHLVEALRQKKIKSFIDNEELS--RGDGISPSLLKAIKESKISVI 71 (73)
Q Consensus 20 g~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~--~G~~i~~~i~~aI~~Sri~Iv 71 (73)
-+|+|.+=+-.|.+.|.++|..+..-|-... ++-.+...+.++++++...|+
T Consensus 367 tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi 420 (478)
T 3g79_A 367 SDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVV 420 (478)
T ss_dssp CSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEE
T ss_pred CcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEE
Confidence 3688999999999999999998877543232 222334566788888887665
No 86
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=25.39 E-value=38 Score=25.07 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=28.5
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcce
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~ 42 (73)
..+.|.+|||.-+|..+|+.+|.-+|....|++
T Consensus 375 ~G~~vmvshrSGETeD~~iAdLaVgl~~gqIKt 407 (452)
T 3otr_A 375 SGWGVQVSHRSGETEDSFIADLVVGLRCGQIKS 407 (452)
T ss_dssp TTCEEEEECCSSCCSCCHHHHHHHHTTCCEEEC
T ss_pred cCCeEEEeCCCCCCchhHHHHHHHHcCCCcccc
Confidence 457889999988888999999999998887766
No 87
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=25.36 E-value=59 Score=19.54 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=17.8
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCccee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f 43 (73)
+++|++|+. + -+-.+.+.++++|.++.
T Consensus 115 i~iS~sG~t-~--~~~~~~~~ak~~g~~vi 141 (188)
T 1tk9_A 115 IGISTSGKS-P--NVLEALKKAKELNMLCL 141 (188)
T ss_dssp EEECSSSCC-H--HHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCC-H--HHHHHHHHHHHCCCEEE
Confidence 467777764 2 45567777788887654
No 88
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB: 3vdh_A*
Probab=25.26 E-value=1.2e+02 Score=20.97 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=29.0
Q ss_pred chHHHHHHHHhcCCcceeecccccC-----CCCCCcHHHHHHHhh
Q 035104 26 NFLSHLVEALRQKKIKSFIDNEELS-----RGDGISPSLLKAIKE 65 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~f~D~~~l~-----~G~~i~~~i~~aI~~ 65 (73)
.|.+.+.+.++++||.+++-+..+. .++=..|.+.+||.+
T Consensus 305 ~~~~~~~~~a~~~gi~~~~Wd~~~~~~dr~~~~w~~p~~~~~~~~ 349 (353)
T 3l55_A 305 DQAADMVKLAKDHHSATFYWMSIFDGSDRIQPQWSLPTVVEAMQE 349 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTTSCGGGGGTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCCCCCCCCCeeCCHHHHHHHHH
Confidence 4789999999999999998764221 223345788888765
No 89
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=25.20 E-value=84 Score=16.62 Aligned_cols=29 Identities=7% Similarity=0.286 Sum_probs=24.1
Q ss_pred cEEeeceeccchhchHHHHHHHHhcCCcce
Q 035104 13 DVFLSFRGEDTRDNFLSHLVEALRQKKIKS 42 (73)
Q Consensus 13 dVFiSfrg~D~r~~f~~~L~~~L~~~gi~~ 42 (73)
.+-|...++| |.+.+..+...|.+.|+++
T Consensus 5 ~~~l~v~~~D-rpGila~vt~~la~~~~NI 33 (91)
T 1zpv_A 5 KAIITVVGKD-KSGIVAGVSGKIAELGLNI 33 (91)
T ss_dssp EEEEEEEESC-CTTHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEECC-CCCHHHHHHHHHHHcCCCE
Confidence 3557778888 6699999999999999865
No 90
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=25.12 E-value=1.8e+02 Score=20.76 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=39.2
Q ss_pred cEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcc--eEEEE
Q 035104 13 DVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESK--ISVII 72 (73)
Q Consensus 13 dVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sr--i~IvV 72 (73)
-|.|.+-.--..+.|...+.+.|...|++|++|. |-.-+|.+.-+++.-+ -.|+|
T Consensus 50 ~VvVG~D~R~ss~~~~~a~a~gl~~~G~~V~~~~-----g~~pTP~~~~av~~~~~~~GImI 106 (464)
T 1tuo_A 50 LVVVGHDTRFLADAFARALSGHLAGMGLKVVLLK-----GPVPTPLLSFAVRHLKAAGGAML 106 (464)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEES-----SSCCHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEeeCCCCCHHHHHHHHHHHHHHCCCeEEEcC-----CCCCHHHHHHHHHHhCCCceEEE
Confidence 4777764444455688999999999999998875 3445788888887643 34443
No 91
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.70 E-value=42 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=24.8
Q ss_pred CCcccEEeeceeccchhc---hHHHHHHHHhcCCcceeec
Q 035104 9 SCRYDVFLSFRGEDTRDN---FLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~---f~~~L~~~L~~~gi~~f~D 45 (73)
.+.||| ..|...|.+.+ =...|.++++++||+|.+|
T Consensus 61 ~~GYd~-~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD 99 (549)
T 4aie_A 61 DNGYDI-SDYEAIDPQYGTMADMDELISKAKEHHIKIVMD 99 (549)
T ss_dssp TTTSSC-SEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcCc-cCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567777 44544443211 1468999999999999998
No 92
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=24.46 E-value=43 Score=23.62 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 89 f~~lv~~~H~~Gi~VilD 106 (435)
T 1mxg_A 89 LVRLIQTAHAYGIKVIAD 106 (435)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 358999999999999998
No 93
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.45 E-value=10 Score=23.22 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=22.2
Q ss_pred CcccEEeeceeccchhchHHHHHHHHhcCCcceee
Q 035104 10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~ 44 (73)
...=||-|+.+.+ .-+..|.+.|+..|+++.-
T Consensus 88 k~va~fgs~g~~~---~a~~~l~~~l~~~G~~~v~ 119 (159)
T 3fni_A 88 QAVGIFETGGGDD---EPIDPLLSKFRNLGLTTAF 119 (159)
T ss_dssp SEEEEECCSSSCB---CCHHHHHHHHHHTTCEESS
T ss_pred CEEEEEEcCCCCc---HHHHHHHHHHHHCCCEEec
Confidence 3445677776554 2467899999999987753
No 94
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=24.43 E-value=42 Score=23.75 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCcceeec
Q 035104 29 SHLVEALRQKKIKSFID 45 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D 45 (73)
..|.++++++||++.+|
T Consensus 82 ~~lv~~aH~~Gi~VilD 98 (483)
T 3bh4_A 82 QDAIGSLHSRNVQVYGD 98 (483)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 58999999999999998
No 95
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=24.41 E-value=42 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 85 f~~Lv~~aH~~Gi~VilD 102 (485)
T 1wpc_A 85 LQAAVTSLKNNGIQVYGD 102 (485)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 358999999999999998
No 96
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=24.00 E-value=44 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 83 f~~lv~~aH~~Gi~VilD 100 (480)
T 1ud2_A 83 LERAIGSLKSNDINVYGD 100 (480)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 368899999999999998
No 97
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=23.85 E-value=27 Score=23.60 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.3
Q ss_pred eeceeccchhchHHHHHHHHhcCC
Q 035104 16 LSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 16 iSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
.|||+.....-|+..|.+.|.+.|
T Consensus 193 vs~r~~~~GS~fiq~L~~~l~~~~ 216 (272)
T 1m72_A 193 FSWRNTTRGSWFMQALCEELRYAG 216 (272)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeecCCCCCCHHHHHHHHHHHhhC
Confidence 345666666679999999998855
No 98
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=23.78 E-value=65 Score=19.58 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=18.7
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCccee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f 43 (73)
+.||++|.- + -+-.+.+.++++|+++.
T Consensus 114 I~iS~SG~t-~--~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 114 LAISTRGNS-R--DIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp EEECSSSCC-H--HHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCC-H--HHHHHHHHHHHCCCEEE
Confidence 467787763 2 45577788888998664
No 99
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=23.77 E-value=40 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=20.2
Q ss_pred HHHHHHhcCCcceeecccccCCCCC
Q 035104 30 HLVEALRQKKIKSFIDNEELSRGDG 54 (73)
Q Consensus 30 ~L~~~L~~~gi~~f~D~~~l~~G~~ 54 (73)
.+...|....|++++|-.+++.|+.
T Consensus 36 ~~l~~l~~~di~a~vDLs~l~~G~~ 60 (98)
T 2kps_A 36 EILNNLTKEQISLWIDATGKAVGEH 60 (98)
T ss_dssp HHHHTCCTTTSBCEECCTTCCSSCE
T ss_pred HHHhhCChhhEEEEEECCCCCCCeE
Confidence 3445688899999999888999973
No 100
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=23.69 E-value=96 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=36.2
Q ss_pred cEEeeceeccchhchHHHHHHHHhcCCcceeec--------c-----c---ccCCCCCCcHHHHHHHhhcceEEEE
Q 035104 13 DVFLSFRGEDTRDNFLSHLVEALRQKKIKSFID--------N-----E---ELSRGDGISPSLLKAIKESKISVII 72 (73)
Q Consensus 13 dVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D--------~-----~---~l~~G~~i~~~i~~aI~~Sri~IvV 72 (73)
-||+|-+..|.. ..+ .+.+.|.+.|++.+-- + . ++..| .|++...|++-+|.+||
T Consensus 944 ~vlisv~d~~K~-~~~-~~a~~l~~~G~~i~aT~gTa~~l~~~gi~~~~v~~~~~g---~p~i~d~~~~~~~~~~~ 1014 (1073)
T 1a9x_A 944 RALLSVREGDKE-RVV-DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEG---RPHIQDRIKNGEYTYII 1014 (1073)
T ss_dssp EEEEECCGGGGT-THH-HHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTC---SSBHHHHHHHTCCSEEE
T ss_pred eEEEEecCcCHH-HHH-HHHHHHHHCCCEEEEcCchHHHHHhCCceEEEEeecCCC---CccHHHHHHcCCeEEEE
Confidence 599998886643 344 6777777777776521 1 1 12223 35789999998888776
No 101
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=23.66 E-value=45 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.1
Q ss_pred hHHHHHHHHhcCCcceeecc
Q 035104 27 FLSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 27 f~~~L~~~L~~~gi~~f~D~ 46 (73)
=+..|.+.|+++|+.||+=.
T Consensus 225 ~~~eLi~~L~~~G~~v~IVS 244 (385)
T 4gxt_A 225 EMVDLYRSLEENGIDCYIVS 244 (385)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEc
Confidence 35799999999999999853
No 102
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=23.64 E-value=49 Score=19.21 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=34.7
Q ss_pred eceeccchhchHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 17 SFRGEDTRDNFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 17 Sfrg~D~r~~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
.-.|.| ..+..+.+.-++.||.+.-|. ..++.|+.|.+++.+|+-+
T Consensus 21 vAKG~~---~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 73 (93)
T 2vt1_B 21 SLIETN---QCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLR 73 (93)
T ss_dssp EEEEEH---HHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHH
T ss_pred EEEeCc---HHHHHHHHHHHHcCCCEEECHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 344555 367788888899999999883 2457899999999888754
No 103
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=23.62 E-value=48 Score=23.13 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCcceeec
Q 035104 29 SHLVEALRQKKIKSFID 45 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D 45 (73)
..|.++++++||++.+|
T Consensus 78 ~~lv~~~h~~Gi~VilD 94 (422)
T 1ua7_A 78 KEMCAAAEEYGIKVIVD 94 (422)
T ss_dssp HHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 58899999999999998
No 104
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=23.58 E-value=65 Score=19.62 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=34.9
Q ss_pred ceeccchhchHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 18 FRGEDTRDNFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 18 frg~D~r~~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
-.|.| ..+..+.+.-+++||.+.-|. ..++.|+.|.+++.+|+-+
T Consensus 66 AKG~~---~~A~~I~~~A~e~~VPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 117 (123)
T 2jli_A 66 FKYTD---AQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAE 117 (123)
T ss_dssp EEEET---HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHH
T ss_pred EEeCC---HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 34554 467888888899999999883 2467899999999998865
No 105
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=23.51 E-value=55 Score=19.09 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHhhcce
Q 035104 53 DGISPSLLKAIKESKI 68 (73)
Q Consensus 53 ~~i~~~i~~aI~~Sri 68 (73)
+.+.|++.++|+++.|
T Consensus 23 ~~vWPEv~~~L~~aGi 38 (104)
T 1x8d_A 23 NPIWPELEAVLKSHGA 38 (104)
T ss_dssp TTCCHHHHHHHHHTTE
T ss_pred HhcCHHHHHHHHHcCC
Confidence 5899999999999887
No 106
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=23.34 E-value=50 Score=26.10 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++|+++||.|.+|
T Consensus 372 fk~lV~~~H~~GI~VILD 389 (877)
T 3faw_A 372 LKQLIHDIHKRGMGVILD 389 (877)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 368999999999999999
No 107
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=23.30 E-value=64 Score=20.00 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=32.6
Q ss_pred chHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 26 NFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
..+..+.+.-+++||.+.-|. ..++.|+.|.+++.+|+-+
T Consensus 81 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 127 (137)
T 3bzs_A 81 AKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQ 127 (137)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHSCTTCBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 467888888899999999883 2467899999999998764
No 108
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A*
Probab=23.28 E-value=64 Score=20.85 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=24.7
Q ss_pred cccEEeeceeccch----------hchHHHHHHHHhcCCcceeec
Q 035104 11 RYDVFLSFRGEDTR----------DNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 11 ~ydVFiSfrg~D~r----------~~f~~~L~~~L~~~gi~~f~D 45 (73)
...+||++-..|.+ ..-...|+++|+++|+.+-..
T Consensus 196 ~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 240 (278)
T 2gzs_A 196 TKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFW 240 (278)
T ss_dssp TCEEEEEECCC-----------CHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEecCccccccccchhhhhHHHHHHHHHHHHcCCCeeEEE
Confidence 34789998777753 245678999999999987654
No 109
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Probab=23.23 E-value=86 Score=16.99 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.4
Q ss_pred EeeceeccchhchHHHHHHHHhcCCcceeec
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D 45 (73)
-++|.-+| +..+++.|.++|+.+-..
T Consensus 74 ~~~~~v~d-----~~~~~~~l~~~G~~~~~~ 99 (135)
T 1f9z_A 74 HIALSVDN-----AAEACEKIRQNGGNVTRE 99 (135)
T ss_dssp EEEEECSC-----HHHHHHHHHHTTCEEEEE
T ss_pred EEEEEeCC-----HHHHHHHHHHCCCEEecC
Confidence 35666665 568899999999987644
No 110
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=23.20 E-value=46 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred CCcccEEeeceecc--c----hhchHHHHHHHHhcCCcceeec
Q 035104 9 SCRYDVFLSFRGED--T----RDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D--~----r~~f~~~L~~~L~~~gi~~f~D 45 (73)
.+.|| |..-| . ... ...|.++++++||++.+|
T Consensus 75 ~~GY~----~~~id~~p~~Gt~~d-fk~Lv~~aH~~GI~VilD 112 (527)
T 1gcy_A 75 GEGYF----WHDFNKNGRYGSDAQ-LRQAASALGGAGVKVLYD 112 (527)
T ss_dssp CSSTT----CSSSCSCSSSCCHHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCcc----cccCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEE
Confidence 57788 44445 2 223 368999999999999998
No 111
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=23.19 E-value=46 Score=23.46 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCcceeec
Q 035104 29 SHLVEALRQKKIKSFID 45 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D 45 (73)
..|.++++++||+|.+|
T Consensus 101 ~~lv~~~H~~Gi~VilD 117 (478)
T 2guy_A 101 KALSSALHERGMYLMVD 117 (478)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 58899999999999998
No 112
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=23.05 E-value=26 Score=23.45 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.8
Q ss_pred eceeccchhchHHHHHHHHhcCC
Q 035104 17 SFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 17 Sfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|||+.....-|+..|.+.|.+.|
T Consensus 184 s~r~~~~GS~fiq~L~~~l~~~~ 206 (259)
T 3sir_A 184 SWRNTTRGSWFMQSLCAELAANG 206 (259)
T ss_dssp CCSSCCCSCHHHHHHHHHHHHHT
T ss_pred eecCCCCCcHHHHHHHHHHHhcC
Confidence 46666666679999999998754
No 113
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=23.00 E-value=48 Score=23.03 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 71 ~~~lv~~~h~~Gi~VilD 88 (405)
T 1ht6_A 71 LKSLIGALHGKGVQAIAD 88 (405)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 368899999999999998
No 114
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=23.00 E-value=34 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.1
Q ss_pred EeeceeccchhchHHHHHHHHhcC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQK 38 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~ 38 (73)
|.|||+.....-|+..|.+.|.+.
T Consensus 175 ~vs~r~~~~gS~fiq~L~~~l~~~ 198 (250)
T 2j32_A 175 YYSWRNSKDGSWFIQSLCAMLKQY 198 (250)
T ss_dssp ECCEEETTTEEHHHHHHHHHHHHH
T ss_pred cEEecCCCCCcHHHHHHHHHHHHh
Confidence 344567766667999999999874
No 115
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=22.91 E-value=48 Score=22.87 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.+.|+++|+.||+=
T Consensus 148 ~~~l~~~l~~~G~~v~iv 165 (327)
T 4as2_A 148 QRELYNKLMENGIEVYVI 165 (327)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 578999999999999984
No 116
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=22.63 E-value=48 Score=23.87 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 84 fk~Lv~~aH~~Gi~VilD 101 (515)
T 1hvx_A 84 YLQAIQAAHAAGMQVYAD 101 (515)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 358899999999999998
No 117
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=22.29 E-value=49 Score=23.45 Aligned_cols=18 Identities=6% Similarity=0.401 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 77 ~~~lv~~~h~~Gi~VilD 94 (471)
T 1jae_A 77 FTDMTRRCNDAGVRIYVD 94 (471)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 368899999999999998
No 118
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=22.24 E-value=30 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=17.6
Q ss_pred eceeccchhchHHHHHHHHhcCC
Q 035104 17 SFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 17 Sfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|||+.....-|+..|.+.|.+.|
T Consensus 233 s~r~~~~GS~FiqaL~~~l~~~~ 255 (305)
T 1f1j_A 233 SWRSPGRGSWFVQALCSILEEHG 255 (305)
T ss_dssp CEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCHHHHHHHHHHHhhC
Confidence 34666656679999999998866
No 119
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=22.24 E-value=70 Score=20.01 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=32.4
Q ss_pred chHHHHHHHHhcCCcceeecc-------cccCCCCCCcHHHHHHHhh
Q 035104 26 NFLSHLVEALRQKKIKSFIDN-------EELSRGDGISPSLLKAIKE 65 (73)
Q Consensus 26 ~f~~~L~~~L~~~gi~~f~D~-------~~l~~G~~i~~~i~~aI~~ 65 (73)
..+..+.+.-+++||.+.-|. ..++.|+.|.+++++|+-+
T Consensus 80 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 126 (144)
T 2jlj_A 80 AQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAE 126 (144)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 467888888899999999883 2467899999999998764
No 120
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.23 E-value=84 Score=18.75 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=18.9
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCccee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f 43 (73)
+++|++|+- + -+-...+.++++|.++.
T Consensus 87 i~iS~sG~t-~--~~~~~~~~ak~~g~~vi 113 (180)
T 1jeo_A 87 ILISGSGRT-E--SVLTVAKKAKNINNNII 113 (180)
T ss_dssp EEEESSSCC-H--HHHHHHHHHHTTCSCEE
T ss_pred EEEeCCCCc-H--HHHHHHHHHHHCCCcEE
Confidence 478888874 2 35567788888897664
No 121
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.17 E-value=30 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.8
Q ss_pred EeeceeccchhchHHHHHHHHhcCC
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKK 39 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~g 39 (73)
|.|||+.....-|+..|.+.|.+.|
T Consensus 193 ~vs~R~~~~GS~fIq~L~~~l~~~~ 217 (278)
T 3od5_A 193 YYSHRETVNGSWYIQDLCEMLGKYG 217 (278)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred eEEecCCCCCcHHHHHHHHHHHhhC
Confidence 3456676666789999999998754
No 122
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=22.15 E-value=50 Score=23.05 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCcceeec
Q 035104 28 LSHLVEALRQKKIKSFID 45 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D 45 (73)
...|.++++++||++.+|
T Consensus 72 f~~lv~~aH~~Gi~VilD 89 (441)
T 1lwj_A 72 FKEMIEAFHDSGIKVVLD 89 (441)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 358889999999999998
No 123
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=21.95 E-value=37 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=19.1
Q ss_pred eccchhchHHHHHHHHhcCCcceeeccccc
Q 035104 20 GEDTRDNFLSHLVEALRQKKIKSFIDNEEL 49 (73)
Q Consensus 20 g~D~r~~f~~~L~~~L~~~gi~~f~D~~~l 49 (73)
..|. .+..+-+..+|...| +|.||..+
T Consensus 68 k~D~-DN~~K~~~Dal~~~G--v~~DD~qv 94 (120)
T 2h8e_A 68 RRNL-DNLQKAAFDALTKAG--FWLDDAQV 94 (120)
T ss_dssp CCCT-HHHHHHHHHHHHHHT--SBSCGGGE
T ss_pred CCCc-cchHHHHHHHhcCCC--cEeCCceE
Confidence 4454 467888888888777 67787654
No 124
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=21.75 E-value=70 Score=17.50 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=19.7
Q ss_pred EeeceeccchhchHHHHHHHHhcCCcceeec
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D 45 (73)
-|+|.-+| +..+++.|.++|+.+...
T Consensus 80 hiaf~v~d-----i~~~~~~l~~~G~~~~~~ 105 (133)
T 3hdp_A 80 HICYEVED-----IQKSIEEMSQIGYTLFKK 105 (133)
T ss_dssp EEEEEESC-----HHHHHHHHTTTTEEEEEE
T ss_pred EEEEEcCC-----HHHHHHHHHHcCCccccC
Confidence 56777766 567899999999987543
No 125
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=21.57 E-value=1.5e+02 Score=19.89 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.7
Q ss_pred hhchHHHHHHHHhcCCcc---eeecccccCC-CCCCc--HHHHHHHhh
Q 035104 24 RDNFLSHLVEALRQKKIK---SFIDNEELSR-GDGIS--PSLLKAIKE 65 (73)
Q Consensus 24 r~~f~~~L~~~L~~~gi~---~f~D~~~l~~-G~~i~--~~i~~aI~~ 65 (73)
+..+...+++.+.+.||. ..+|.- +.. |+... -+++++++.
T Consensus 145 ~~~~l~~~~~~a~~~Gi~~~~IilDPg-~gfigk~~~~~~~~l~~l~~ 191 (271)
T 2yci_X 145 RSQLAMELVANADAHGIPMTELYIDPL-ILPVNVAQEHAVEVLETIRQ 191 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEECC-CCCTTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccEEEecC-CCccccCHHHHHHHHHHHHH
Confidence 456889999999999998 799985 655 77664 345666654
No 126
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.52 E-value=83 Score=18.79 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCccee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f 43 (73)
+.+|++|.- + -+-.+.+.++++|.++.
T Consensus 101 I~iS~sG~t-~--~~~~~~~~ak~~g~~vi 127 (183)
T 2xhz_A 101 IAISNSGES-S--EITALIPVLKRLHVPLI 127 (183)
T ss_dssp EEECSSSCC-H--HHHHHHHHHHTTTCCEE
T ss_pred EEEeCCCCC-H--HHHHHHHHHHHCCCCEE
Confidence 467787763 2 45577788888997664
No 127
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=21.49 E-value=55 Score=23.16 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCcceeec
Q 035104 29 SHLVEALRQKKIKSFID 45 (73)
Q Consensus 29 ~~L~~~L~~~gi~~f~D 45 (73)
..|.++++++||+|.+|
T Consensus 101 ~~lv~~~H~~Gi~VilD 117 (484)
T 2aaa_A 101 KSLSDALHARGMYLMVD 117 (484)
T ss_dssp HHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 58899999999999998
No 128
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A*
Probab=21.46 E-value=74 Score=19.74 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCcceee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~ 44 (73)
++|.+...|........++++|+++|+.+-+
T Consensus 203 ~li~~G~~D~~v~~~~~~~~~l~~~g~~~~~ 233 (268)
T 1jjf_A 203 LFIACGTNDSLIGFGQRVHEYCVANNINHVY 233 (268)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEecCCCCCccHHHHHHHHHHHCCCceEE
Confidence 8999988887656677899999999876543
No 129
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=21.26 E-value=53 Score=23.25 Aligned_cols=19 Identities=47% Similarity=0.569 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCcceeecc
Q 035104 28 LSHLVEALRQKKIKSFIDN 46 (73)
Q Consensus 28 ~~~L~~~L~~~gi~~f~D~ 46 (73)
...|.++++++||++.+|-
T Consensus 84 ~~~Lv~~aH~~Gi~VilD~ 102 (488)
T 1wza_A 84 FHKLVEAAHQRGIKVIIDL 102 (488)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3688899999999999993
No 130
>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}
Probab=21.24 E-value=96 Score=16.67 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=20.2
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCcceeec
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D 45 (73)
.-|+|.-+| +..+++.|.++|+.+-..
T Consensus 81 ~~~~~~v~d-----~~~~~~~l~~~G~~~~~~ 107 (133)
T 4hc5_A 81 TGISLITRD-----IDEAYKTLTERGVTFTKP 107 (133)
T ss_dssp EEEEEEESC-----HHHHHHHHHHTTCEESSS
T ss_pred EEEEEEeCC-----HHHHHHHHHHCCCEeecC
Confidence 346777666 568999999999987543
No 131
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=21.08 E-value=31 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=20.5
Q ss_pred CcccEEeec---------eeccchhchHHHHHHHHhcC
Q 035104 10 CRYDVFLSF---------RGEDTRDNFLSHLVEALRQK 38 (73)
Q Consensus 10 ~~ydVFiSf---------rg~D~r~~f~~~L~~~L~~~ 38 (73)
..-|.++.| |+.....-|+..|.+.|.+.
T Consensus 198 ~~aD~Li~ysT~pG~vs~R~~~~GS~fiq~L~~~l~~~ 235 (277)
T 1nw9_B 198 TPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQW 235 (277)
T ss_dssp CSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCeEEEcCCCCCcHHHHHHHHHHHHh
Confidence 345666665 55555557999999999874
No 132
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=20.90 E-value=1.4e+02 Score=18.96 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.1
Q ss_pred EEeeceeccc--hhchHHHHHHHHhcCCc-ce
Q 035104 14 VFLSFRGEDT--RDNFLSHLVEALRQKKI-KS 42 (73)
Q Consensus 14 VFiSfrg~D~--r~~f~~~L~~~L~~~gi-~~ 42 (73)
.||.+-|.|. +.+.+..|.+.|..+|+ .+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4788888775 45677899999999998 54
No 133
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.88 E-value=80 Score=19.24 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=18.9
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCccee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSF 43 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f 43 (73)
+.+|++|.- + -+-.+.+.++++|+++.
T Consensus 118 I~iS~SG~t-~--~~i~~~~~ak~~g~~vI 144 (199)
T 1x92_A 118 LAISTSGNS-A--NVIQAIQAAHDREMLVV 144 (199)
T ss_dssp EEECSSSCC-H--HHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCC-H--HHHHHHHHHHHCCCEEE
Confidence 467787763 2 45567788889998764
No 134
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.85 E-value=55 Score=23.18 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCcccEEeeceeccchhc---hHHHHHHHHhcCCcceeec
Q 035104 9 SCRYDVFLSFRGEDTRDN---FLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~---f~~~L~~~L~~~gi~~f~D 45 (73)
.+.||+ ..|...|.+.+ =...|.++++++||++.+|
T Consensus 84 ~~GYd~-~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD 122 (488)
T 2wc7_A 84 NHRYHT-HDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLD 122 (488)
T ss_dssp TCTTSE-EEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCC-cCccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467777 34444443311 1368899999999999999
No 135
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=20.84 E-value=1.7e+02 Score=18.59 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=34.4
Q ss_pred cccEEeeceeccch--hchHHHHHHHHhcCCcceeecccccC-CCCCCcHHHHHHHh
Q 035104 11 RYDVFLSFRGEDTR--DNFLSHLVEALRQKKIKSFIDNEELS-RGDGISPSLLKAIK 64 (73)
Q Consensus 11 ~ydVFiSfrg~D~r--~~f~~~L~~~L~~~gi~~f~D~~~l~-~G~~i~~~i~~aI~ 64 (73)
+.-||+.|-..|.- ......+++.|++.|..+-... .+ -|=.|.++-++.|.
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~--y~g~gH~i~~~~l~~~~ 237 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKH--YVGMQHSVCMEEIKDIS 237 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEE--ESSCCSSCCHHHHHHHH
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEE--ECCCCCccCHHHHHHHH
Confidence 34599999877753 3566899999999998774331 22 24456666555543
No 136
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=20.76 E-value=56 Score=22.97 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCcccEEeeceeccchhc---hHHHHHHHHhcCCcceeec
Q 035104 9 SCRYDVFLSFRGEDTRDN---FLSHLVEALRQKKIKSFID 45 (73)
Q Consensus 9 ~~~ydVFiSfrg~D~r~~---f~~~L~~~L~~~gi~~f~D 45 (73)
.+.||+ ..|...|.+.+ =...|.++++++||++.+|
T Consensus 78 ~~gY~~-~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD 116 (475)
T 2z1k_A 78 NHRYHT-VDYFQVDPILGGNEALRHLLEVAHAHGVRVILD 116 (475)
T ss_dssp TTCCSE-EEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcCC-CCcCccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 466777 34443333211 1368899999999999998
No 137
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.52 E-value=85 Score=18.83 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=18.8
Q ss_pred EEeeceeccchhchHHHHHHHHhcCCcceee
Q 035104 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~ 44 (73)
+.+|++|+- + -+-.+.+.++++|+++..
T Consensus 92 i~iS~sG~t-~--~~~~~~~~ak~~g~~vi~ 119 (187)
T 3sho_A 92 IGVSVWRYL-R--DTVAALAGAAERGVPTMA 119 (187)
T ss_dssp EEECCSSCC-H--HHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCCCC-H--HHHHHHHHHHHCCCCEEE
Confidence 467777763 2 355677788888887643
No 138
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=20.37 E-value=72 Score=19.41 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=22.1
Q ss_pred EeeceeccchhchHHHHHHHHhcCCcceee
Q 035104 15 FLSFRGEDTRDNFLSHLVEALRQKKIKSFI 44 (73)
Q Consensus 15 FiSfrg~D~r~~f~~~L~~~L~~~gi~~f~ 44 (73)
-|+-.|-..+.+|+..+...|.+.||++-+
T Consensus 27 ~i~v~~~~~~~G~~~~if~~La~~~Invd~ 56 (167)
T 2re1_A 27 RINVRGVPDKPGVAYQILGAVADANIEVDM 56 (167)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCCC
T ss_pred EEEEecCCCCcCHHHHHHHHHHHcCCeEEE
Confidence 344444223468999999999999998865
No 139
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=20.34 E-value=1.5e+02 Score=19.96 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=27.5
Q ss_pred ccchhchHHHHHHHHhcCCcceeecccccCC-CC-CCcHHHHHHHhhcceE
Q 035104 21 EDTRDNFLSHLVEALRQKKIKSFIDNEELSR-GD-GISPSLLKAIKESKIS 69 (73)
Q Consensus 21 ~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~-G~-~i~~~i~~aI~~Sri~ 69 (73)
.|.....+..|.++|.+.|+.+-..+ .... ++ .+. .+++.|+.++.-
T Consensus 139 ~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~d~~-~~l~~ik~~~~~ 187 (389)
T 3o21_A 139 TERGFSVLQAIMEAAVQNNWQVTARS-VGNIKDVQEFR-RIIEEMDRRQEK 187 (389)
T ss_dssp STTCSHHHHHHHHHHHHTTCEEEEEE-CTTCCCTHHHH-HHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEE-ecCCCCcHHHH-HHHHHHHhCCCe
Confidence 34445677888888888887664432 1222 32 233 566777776543
No 140
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=20.25 E-value=94 Score=20.05 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=25.5
Q ss_pred ccEEeeceeccc----------------hhchHHHHHHHHhcCC-cceeec
Q 035104 12 YDVFLSFRGEDT----------------RDNFLSHLVEALRQKK-IKSFID 45 (73)
Q Consensus 12 ydVFiSfrg~D~----------------r~~f~~~L~~~L~~~g-i~~f~D 45 (73)
.-|||.+-..|. -..-...|+++|+++| +.+-..
T Consensus 206 ~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~G~~~v~~~ 256 (304)
T 1sfr_A 206 TRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFD 256 (304)
T ss_dssp CEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 468999987775 2334578999999999 876554
No 141
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=20.20 E-value=96 Score=19.81 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=25.4
Q ss_pred cccEEeec----eeccc---------hhchHHHHHHHHhcCC-cceeec
Q 035104 11 RYDVFLSF----RGEDT---------RDNFLSHLVEALRQKK-IKSFID 45 (73)
Q Consensus 11 ~ydVFiSf----rg~D~---------r~~f~~~L~~~L~~~g-i~~f~D 45 (73)
...|||.+ -..|. -..-...|+++|+++| +.+-..
T Consensus 198 ~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 246 (280)
T 1r88_A 198 NTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFD 246 (280)
T ss_dssp TCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcceEEE
Confidence 35699999 66675 2344578999999999 766443
No 142
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=20.04 E-value=58 Score=19.84 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred cchhchHHHHHHHHhcCCcceeecccccCCCCCCc
Q 035104 22 DTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGIS 56 (73)
Q Consensus 22 D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~ 56 (73)
|+|. +.+++-..|.++|+.+-.- .|+-||-+.
T Consensus 10 D~RE-~~s~~~~~L~~~gv~~~~~--~L~vGDyi~ 41 (143)
T 1j23_A 10 DSRE-LRSEVVKRLKLLGVKLEVK--TLDVGDYII 41 (143)
T ss_dssp EGGG-TTSHHHHHHHHTTCEEEEE--CCSSCSEEC
T ss_pred ECCC-cchHhHHHHHHCCCeEEEE--ECCCCCEEe
Confidence 5553 4567888899999987554 588888754
Done!