BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035107
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CM86|COX19_CRYNJ Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=COX19 PE=3 SV=1
Length = 115
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 11 YIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENP 61
Y+ C+K + + + CR+FSK+YLECRM K LMA+ D++ LG GD+ +P
Sbjct: 37 YLKCMKENANDNGKCRLFSKQYLECRMDKGLMARDDMANLGL---GDVVDP 84
>sp|P0CM87|COX19_CRYNB Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=COX19 PE=3 SV=1
Length = 115
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 11 YIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENP 61
Y+ C+K + + + CR+FSK+YLECRM K LMA+ D++ LG GD+ +P
Sbjct: 37 YLKCMKENANDNGKCRLFSKQYLECRMDKGLMARDDMANLGL---GDVVDP 84
>sp|O14056|COX19_SCHPO Cytochrome c oxidase assembly protein cox19, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox19 PE=3 SV=2
Length = 112
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNE 55
+C K Y+ C+K E CR+ +KKYL+CRM L K D+ LGF +
Sbjct: 30 ECTHVMKQYLECIKVKRENQEECRLLAKKYLQCRMDTGLFGKDDMKNLGFHGD 82
>sp|Q54IA0|COX19_DICDI Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium
discoideum GN=cox19 PE=3 SV=1
Length = 106
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGF 52
+C Y+ CL + S C FSK+YL+CRM NLMAK+D+ GF
Sbjct: 27 ECSKPMLAYVNCLSENNGLSRFCMEFSKEYLKCRMDNNLMAKEDMDNFGF 76
>sp|A8E4L1|COX19_BOVIN Cytochrome c oxidase assembly protein COX19 OS=Bos taurus
GN=COX19 PE=2 SV=1
Length = 89
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENPR 62
+C K+ ++ CL+ + ++ CR SK+YLECRM + LMA++ L +LGF GDL + +
Sbjct: 29 ECKSFKEKFMKCLRDNNFENALCRNESKEYLECRMERQLMAQEPLEKLGF---GDLIDGK 85
Query: 63 EENN 66
+ N
Sbjct: 86 SDKN 89
>sp|Q8K0C8|COX19_MOUSE Cytochrome c oxidase assembly protein COX19 OS=Mus musculus
GN=Cox19 PE=3 SV=1
Length = 92
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRN 54
+C K+ ++ CL+ +++ CR SK+YL CRM + LMA + L +LGFR+
Sbjct: 29 ECKSFKEKFMRCLRDKNYENALCRNESKEYLMCRMQRQLMAPEPLEKLGFRD 80
>sp|Q6CS47|COX19_KLULA Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX19 PE=3 SV=1
Length = 99
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 CDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNE 55
C + ++Y+ C+K G + NCR+ +K+YL+CRM LM + D LG ++
Sbjct: 30 CTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLMDRDDWKHLGLPSD 82
>sp|Q5AL10|COX19_CANAL Cytochrome c oxidase assembly protein COX19 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=COX19 PE=3 SV=1
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 11 YIGCLK-SSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRN---EGDLE 59
Y+ C+K + + NCRI +K+YL+CRM LM K D LG N E D+E
Sbjct: 39 YLTCMKFTENKNAPNCRILAKQYLKCRMDNQLMEKSDWDSLGLVNLPGENDVE 91
>sp|Q4P821|COX19_USTMA Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=COX19 PE=3 SV=1
Length = 197
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENPR 62
+C ++Y+ C+K + + + CR S+ YL+CRM K LM + ++ LGF++ D +
Sbjct: 29 ECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDKGLMEQDNMDNLGFKDVVDPASTE 88
Query: 63 EEN 65
+N
Sbjct: 89 TKN 91
>sp|Q49B96|COX19_HUMAN Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens
GN=COX19 PE=1 SV=1
Length = 90
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENPR 62
+C K+ ++ CL ++ ++ CR SK+YLECRM + LM ++ L +LGF GDL + +
Sbjct: 29 ECKSFKEKFMKCLHNNNFENALCRKESKEYLECRMERKLMLQEPLEKLGF---GDLTSGK 85
Query: 63 EE 64
E
Sbjct: 86 SE 87
>sp|Q75AF9|COX19_ASHGO Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX19 PE=3 SV=2
Length = 99
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 QCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNE 55
+C + +Y+ C+K G + NCR+ ++ YL+CRM LM + + + LG ++
Sbjct: 29 ECTAQMMEYLNCMKLVRGENAPNCRLLARNYLKCRMDHRLMDRDEWAHLGLPDD 82
>sp|Q462Q7|COX19_PARBR Cytochrome c oxidase assembly protein COX19 OS=Paracoccidioides
brasiliensis GN=COX19 PE=3 SV=1
Length = 107
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 3 QCDLEKKDYIGCLKSSGH-QSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGDLENP 61
+C Y+ CLK G E CR +K YL CRM NLMA + LG + D +
Sbjct: 30 ECKFIISSYLQCLKKGGGVNDETCRKLAKSYLSCRMDHNLMAPECFENLGLVFDEDKKK- 88
Query: 62 REENNGRIENGS 73
REE + S
Sbjct: 89 REEASASTTAAS 100
>sp|Q6FVQ3|COX19_CANGA Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX19 PE=3 SV=1
Length = 86
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 YIGCLKSSGHQ-SENCRIFSKKYLECRMAKNLMAKQDLSELGF 52
Y+ C++ + ++ + NCR+ +K YL+CRM LM K + LG
Sbjct: 38 YLQCMRLAANENAHNCRLLAKDYLKCRMDHQLMDKDEWKNLGL 80
>sp|Q3E731|COX19_YEAST Cytochrome c oxidase assembly protein COX19 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX19 PE=1
SV=1
Length = 98
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 3 QCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGF 52
+C ++Y+ C++ + NCR+ +K YL CRM LM + S LG
Sbjct: 29 ECTKYMQEYLKCMQLVQNENAMNCRLLAKDYLRCRMDHQLMDYDEWSHLGL 79
>sp|A9CSU5|SYQ_ENTBH Probable glutamine--tRNA ligase OS=Enterocytozoon bieneusi (strain
H348) GN=EBI_22570 PE=3 SV=1
Length = 691
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 33 LECRMAKNLMAKQDLSELGFRNEGDLENPREENNGRIEN 71
+E RM K L D E+G+ N+ DL N E +G ++N
Sbjct: 607 VELRMYKPLFKSFDPDEIGYMNDIDLTNSLEIIDGYVDN 645
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,888,087
Number of Sequences: 539616
Number of extensions: 864130
Number of successful extensions: 1112
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 17
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)