Query 035107
Match_columns 73
No_of_seqs 105 out of 166
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 96.3 0.0056 1.9E-07 33.3 3.8 34 3-36 2-35 (38)
2 2lql_A Coiled-coil-helix-coile 95.9 0.0037 1.3E-07 40.8 2.2 39 3-41 60-98 (113)
3 1hp8_A HU-P8; leukemia, cystei 95.9 0.0096 3.3E-07 36.4 3.8 35 3-37 6-40 (68)
4 2lqt_A Coiled-coil-helix-coile 87.9 0.69 2.4E-05 29.2 3.9 33 4-36 16-48 (85)
5 2lql_A Coiled-coil-helix-coile 85.4 0.29 1E-05 31.7 1.2 38 3-40 14-52 (113)
6 1v54_H AED, cytochrome C oxida 71.8 4.6 0.00016 24.9 3.5 31 4-34 29-62 (85)
7 1cks_A Cyclin-dependent kinase 69.0 1.8 6.1E-05 27.0 1.2 21 39-59 35-55 (79)
8 1u96_A Cytochrome C oxidase co 68.2 4.1 0.00014 24.8 2.7 40 4-54 26-65 (69)
9 1u96_A Cytochrome C oxidase co 61.4 12 0.00041 22.7 3.8 21 2-22 45-65 (69)
10 1puc_A P13SUC1, P13; cell cycl 59.4 4.1 0.00014 26.6 1.6 21 40-60 63-83 (105)
11 3qy2_A Cyclin-dependent kinase 56.5 4.2 0.00014 27.0 1.3 20 40-59 67-86 (117)
12 1qb3_A Cyclin-dependent kinase 52.0 5.9 0.0002 27.3 1.5 20 40-59 67-86 (150)
13 1pp9_H Ubiquinol-cytochrome C 44.2 15 0.00053 22.3 2.4 34 3-36 29-65 (78)
14 3mgd_A Predicted acetyltransfe 36.5 18 0.00062 20.5 1.7 28 41-68 127-154 (157)
15 3tgu_H Mitochondrial ubiquinol 25.0 51 0.0018 19.8 2.4 34 3-36 28-64 (77)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=96.30 E-value=0.0056 Score=33.33 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHhhch
Q 035107 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 36 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 36 (73)
-|+.+...+..||..|+++.++|..+...|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999988874
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=95.91 E-value=0.0037 Score=40.81 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHhhchhcccc
Q 035107 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNL 41 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~L 41 (73)
.|...+..|-.||+.|+.+-..||..-+.+.+|-=+..+
T Consensus 60 ~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~~ 98 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQP 98 (113)
T ss_dssp HTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999999999744333
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=95.88 E-value=0.0096 Score=36.41 Aligned_cols=35 Identities=14% Similarity=0.437 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHhhchh
Q 035107 3 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 37 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRM 37 (73)
-|+.+......||..|+++.++|..+-..|=+|+-
T Consensus 6 PC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~ 40 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKCCA 40 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999985
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=87.91 E-value=0.69 Score=29.25 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHhhch
Q 035107 4 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 36 (73)
Q Consensus 4 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 36 (73)
|.++-..=++||..|+.+-+.|...=..|=.|+
T Consensus 16 C~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CK 48 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48 (85)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999996
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=85.40 E-value=0.29 Score=31.67 Aligned_cols=38 Identities=16% Similarity=0.428 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHhcC-CCChHHHHHHHHHhhchhccc
Q 035107 3 QCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECRMAKN 40 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~-~~~~~CR~laK~YL~CRMd~~ 40 (73)
.|...+..||.|..++. .+...|..+.++==.|-.++.
T Consensus 14 ~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p 52 (113)
T 2lql_A 14 YCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHP 52 (113)
T ss_dssp CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCC
T ss_pred HccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccH
Confidence 59999999999999884 457788888888888865543
No 6
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=71.76 E-value=4.6 Score=24.95 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHh---cCCCChHHHHHHHHHhh
Q 035107 4 CDLEKKDYIGCLKS---SGHQSENCRIFSKKYLE 34 (73)
Q Consensus 4 Ck~~m~~Yl~CLk~---~~~~~~~CR~laK~YL~ 34 (73)
|=..-..|.+|++. ++.+.+.|..+-+.|-+
T Consensus 29 Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 29 CWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44556789999665 99999999999999853
No 7
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=68.98 E-value=1.8 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.3
Q ss_pred ccccChhhhcccCCCCCCCCC
Q 035107 39 KNLMAKQDLSELGFRNEGDLE 59 (73)
Q Consensus 39 ~~LM~kdd~~~LGf~~~~~~~ 59 (73)
..||+.++|.+||.....+|.
T Consensus 35 ~~LlsE~EWR~LGIqqS~GW~ 55 (79)
T 1cks_A 35 THLMSEEEWRRLGVQQSLGWV 55 (79)
T ss_dssp SSCCCHHHHHHHTCCCCTTCC
T ss_pred ccccCHHHHHHhCcccCCCeE
Confidence 469999999999998888764
No 8
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=68.23 E-value=4.1 Score=24.81 Aligned_cols=40 Identities=38% Similarity=0.792 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHhhchhcccccChhhhcccCCCC
Q 035107 4 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRN 54 (73)
Q Consensus 4 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LM~kdd~~~LGf~~ 54 (73)
|......==.|+-.++.++..|..+-..|.+| +..+||.-
T Consensus 26 CpetK~aRDeCil~~gee~~~C~~lIeahk~C-----------Mr~~GF~v 65 (69)
T 1u96_A 26 CKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEV 65 (69)
T ss_dssp SSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHH-----------HHTTTCCC
T ss_pred CcchhhHHHHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCC
Confidence 56666666789999988888999999999988 46677753
No 9
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=61.40 E-value=12 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHHHhcCCCC
Q 035107 2 HQCDLEKKDYIGCLKSSGHQS 22 (73)
Q Consensus 2 geCk~~m~~Yl~CLk~~~~~~ 22 (73)
..|+..+..|-.||+.-|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 379999999999999987653
No 10
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=59.43 E-value=4.1 Score=26.58 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.0
Q ss_pred cccChhhhcccCCCCCCCCCC
Q 035107 40 NLMAKQDLSELGFRNEGDLEN 60 (73)
Q Consensus 40 ~LM~kdd~~~LGf~~~~~~~~ 60 (73)
.||+.++|..||.....+|.-
T Consensus 63 rLLtE~EWR~LGIqqS~GW~H 83 (105)
T 1puc_A 63 RILQEEEWRGLGITQSLGWEM 83 (105)
T ss_dssp CCCCHHHHHHTTCCCCSSCCC
T ss_pred cccCHHHHHHhCcccCCCcEE
Confidence 499999999999988877743
No 11
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=56.50 E-value=4.2 Score=27.01 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.3
Q ss_pred cccChhhhcccCCCCCCCCC
Q 035107 40 NLMAKQDLSELGFRNEGDLE 59 (73)
Q Consensus 40 ~LM~kdd~~~LGf~~~~~~~ 59 (73)
.||+.++|..||.....+|.
T Consensus 67 rLLsE~EWR~LGIqqS~GW~ 86 (117)
T 3qy2_A 67 RILTEDEWRGLGITQSLGWE 86 (117)
T ss_dssp CCCCHHHHHHTTCCCCSSCE
T ss_pred eecCHHHHHHhccccCCCcE
Confidence 49999999999998877764
No 12
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=52.00 E-value=5.9 Score=27.27 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.4
Q ss_pred cccChhhhcccCCCCCCCCC
Q 035107 40 NLMAKQDLSELGFRNEGDLE 59 (73)
Q Consensus 40 ~LM~kdd~~~LGf~~~~~~~ 59 (73)
.||+.++|..||..-..+|.
T Consensus 67 rLLtE~EWR~LGIqQS~GW~ 86 (150)
T 1qb3_A 67 RILTEDEWRGLGITQSLGWE 86 (150)
T ss_dssp CCCCHHHHHHTTCCCCTTCE
T ss_pred cCCCHHHHHHHccccCcCcE
Confidence 49999999999998877763
No 13
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=44.20 E-value=15 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHhcCC---CChHHHHHHHHHhhch
Q 035107 3 QCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 36 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~---~~~~CR~laK~YL~CR 36 (73)
.|...+..|-.|..+... ....|-..--+|+.|+
T Consensus 29 ~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 29 KCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 588999999999999733 3468999999999995
No 14
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=36.48 E-value=18 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=19.4
Q ss_pred ccChhhhcccCCCCCCCCCCCCccCCCC
Q 035107 41 LMAKQDLSELGFRNEGDLENPREENNGR 68 (73)
Q Consensus 41 LM~kdd~~~LGf~~~~~~~~~~~kn~~~ 68 (73)
--+..=|+++||............++.+
T Consensus 127 ~~a~~~y~k~GF~~~~~~~~~~~~~~~~ 154 (157)
T 3mgd_A 127 KLGRPVYKKYGFQDTDEWLELNLLEHHH 154 (157)
T ss_dssp TTHHHHHHHHTCCCCTTCCCCCTTTCC-
T ss_pred cccHHHHHHcCCeecceEEEEccCCCCc
Confidence 3455568999999988877666555544
No 15
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=25.00 E-value=51 Score=19.84 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHHhcCC---CChHHHHHHHHHhhch
Q 035107 3 QCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 36 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~---~~~~CR~laK~YL~CR 36 (73)
.|......|-.|..+... -...|-..--+|+.|+
T Consensus 28 ~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCv 64 (77)
T 3tgu_H 28 KCVKARERLELCDARVSSRSHTEEQCTEELFDFLHAR 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 488999999999998733 4568999999999885
Done!