Query 035107
Match_columns 73
No_of_seqs 105 out of 166
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 81.1 1 7.5E-05 26.0 3.8 33 4-36 7-39 (68)
2 d1u97a_ a.17.1.2 (A:) Cytochro 71.0 2.6 0.00019 24.3 3.7 40 4-54 26-65 (69)
3 d1cksa_ d.97.1.1 (A:) CksHs2 { 69.8 0.8 5.8E-05 26.9 1.2 23 38-60 33-55 (74)
4 d1puca_ d.97.1.1 (A:) suc1 {Fi 56.5 2.1 0.00016 26.2 1.4 21 40-60 63-83 (101)
5 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 56.0 2.3 0.00016 26.5 1.5 20 40-59 62-81 (113)
6 d1u97a_ a.17.1.2 (A:) Cytochro 54.1 4.8 0.00035 23.1 2.6 20 3-22 46-65 (69)
7 d1v54h_ a.51.1.1 (H:) Cytochro 47.6 11 0.00077 21.9 3.5 30 4-33 23-55 (79)
8 d1ppjh_ f.28.1.1 (H:) Non-heme 40.7 13 0.00096 20.5 3.1 34 3-36 17-53 (66)
9 d2e9xd1 a.278.1.4 (D:21-165) G 28.0 12 0.00087 23.3 1.6 17 23-39 63-79 (145)
10 d2c9wc1 d.42.1.1 (C:17-112) El 20.3 16 0.0012 20.5 0.9 9 27-35 88-96 (96)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.09 E-value=1 Score=26.00 Aligned_cols=33 Identities=15% Similarity=0.473 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHhhch
Q 035107 4 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 36 (73)
Q Consensus 4 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 36 (73)
|+...=..-.||+.|+++.++|.+.-.+.-+|=
T Consensus 7 Ck~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~CC 39 (68)
T d2hp8a_ 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp THHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 777777888999999999999999988877764
No 2
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.96 E-value=2.6 Score=24.29 Aligned_cols=40 Identities=38% Similarity=0.792 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHhhchhcccccChhhhcccCCCC
Q 035107 4 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRN 54 (73)
Q Consensus 4 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LM~kdd~~~LGf~~ 54 (73)
|+.....==.|+-.++.++.+|..+-..|.+| +..+||.-
T Consensus 26 CpetK~aRDeCil~~ge~~~~C~~lIeahk~C-----------Mr~~GF~v 65 (69)
T d1u97a_ 26 CKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEV 65 (69)
T ss_dssp CHHHHHHHHHHHHHTCTTSTTSHHHHHHHHHH-----------HHHHTCSS
T ss_pred CchhhhHhhHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCC
Confidence 67777777789999999888999999999998 45677754
No 3
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.82 E-value=0.8 Score=26.87 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred cccccChhhhcccCCCCCCCCCC
Q 035107 38 AKNLMAKQDLSELGFRNEGDLEN 60 (73)
Q Consensus 38 d~~LM~kdd~~~LGf~~~~~~~~ 60 (73)
...||+.++|.+||.....+|.-
T Consensus 33 k~~LlsE~EWR~LGIqqS~GW~H 55 (74)
T d1cksa_ 33 KTHLMSEEEWRRLGVQQSLGWVH 55 (74)
T ss_dssp SSSCCCHHHHHHHTCCCCTTCCC
T ss_pred CccccCHHHHHHhCcccCCCcEE
Confidence 35699999999999988887753
No 4
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=56.46 E-value=2.1 Score=26.19 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.2
Q ss_pred cccChhhhcccCCCCCCCCCC
Q 035107 40 NLMAKQDLSELGFRNEGDLEN 60 (73)
Q Consensus 40 ~LM~kdd~~~LGf~~~~~~~~ 60 (73)
.||+.++|.+||.....+|.-
T Consensus 63 rLLtE~EWR~LGIqqS~GW~H 83 (101)
T d1puca_ 63 RILQEEEWRGLGITQSLGWEM 83 (101)
T ss_dssp CCCCHHHHHHTTCCCCSSCCC
T ss_pred ccCCHHHHHHhccccCCCcEe
Confidence 399999999999988887754
No 5
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.99 E-value=2.3 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.3
Q ss_pred cccChhhhcccCCCCCCCCC
Q 035107 40 NLMAKQDLSELGFRNEGDLE 59 (73)
Q Consensus 40 ~LM~kdd~~~LGf~~~~~~~ 59 (73)
.||+.++|.+||..-..+|.
T Consensus 62 rLLtE~EWR~LGIqqS~GW~ 81 (113)
T d1qb3a_ 62 RILTEDEWRGLGITQSLGWE 81 (113)
T ss_dssp CCCCHHHHHHTTCCCCTTCE
T ss_pred ccCCHHHHHHhCcccCCCcE
Confidence 49999999999998877763
No 6
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.14 E-value=4.8 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.575 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHHhcCCCC
Q 035107 3 QCDLEKKDYIGCLKSSGHQS 22 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~~~~~ 22 (73)
.|+..+..|-.||+.-|.+-
T Consensus 46 ~C~~lIeahk~CMr~~GF~v 65 (69)
T d1u97a_ 46 KCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp TSHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 49999999999999887653
No 7
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.55 E-value=11 Score=21.94 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHH---hcCCCChHHHHHHHHHh
Q 035107 4 CDLEKKDYIGCLK---SSGHQSENCRIFSKKYL 33 (73)
Q Consensus 4 Ck~~m~~Yl~CLk---~~~~~~~~CR~laK~YL 33 (73)
|-.--..|-+|.| ..|.+.+.|..+.+-|-
T Consensus 23 C~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~ 55 (79)
T d1v54h_ 23 CWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4445678999955 45999999999999884
No 8
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=40.68 E-value=13 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHHhc---CCCChHHHHHHHHHhhch
Q 035107 3 QCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 36 (73)
Q Consensus 3 eCk~~m~~Yl~CLk~~---~~~~~~CR~laK~YL~CR 36 (73)
.|......|..|..+. +...+.|-..-=+|+.|+
T Consensus 17 ~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~ 53 (66)
T d1ppjh_ 17 KCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5889999999999986 334457999999999986
No 9
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.99 E-value=12 Score=23.30 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhhchhcc
Q 035107 23 ENCRIFSKKYLECRMAK 39 (73)
Q Consensus 23 ~~CR~laK~YL~CRMd~ 39 (73)
...|=+-++||.||+.+
T Consensus 63 eRikfllrsYLR~RL~K 79 (145)
T d2e9xd1 63 ERIRYVLSSYLRCRLMK 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777889999999975
No 10
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=16 Score=20.51 Aligned_cols=9 Identities=22% Similarity=1.080 Sum_probs=6.5
Q ss_pred HHHHHHhhc
Q 035107 27 IFSKKYLEC 35 (73)
Q Consensus 27 ~laK~YL~C 35 (73)
.+|.+||+|
T Consensus 88 i~AAnyLd~ 96 (96)
T d2c9wc1 88 LMAANFLDC 96 (96)
T ss_dssp HHHHHHHTC
T ss_pred HHHHhhhcC
Confidence 357788877
Done!