Query 035110
Match_columns 73
No_of_seqs 48 out of 50
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_C Translation machinery-a 99.4 3.3E-14 1.1E-18 99.1 1.2 56 11-69 32-89 (142)
2 4a9a_C Translation machinery-a 81.3 1.2 4.2E-05 30.7 3.1 49 13-63 13-75 (142)
3 2f3y_B Voltage-dependent L-typ 41.7 16 0.00056 18.9 1.8 16 17-32 7-22 (26)
4 3qrx_B Melittin; calcium-bindi 40.7 9 0.00031 19.8 0.7 14 19-32 13-26 (26)
5 3pow_A Calreticulin; legume le 39.0 19 0.00066 26.7 2.6 22 24-45 243-264 (265)
6 1xi4_J LCA, clathrin light cha 37.1 68 0.0023 19.3 4.5 33 16-48 5-37 (70)
7 3g5o_A Uncharacterized protein 32.7 24 0.00083 21.9 2.0 51 11-62 41-91 (108)
8 2zvk_U DNA polymerase ETA, pro 26.8 29 0.00099 17.9 1.3 14 10-24 4-17 (26)
9 2xl1_A Arginine attenuator pep 26.5 13 0.00043 19.2 -0.1 10 55-70 1-10 (26)
10 2a6q_A Antitoxin YEFM; YEFM, a 25.7 1E+02 0.0035 17.7 3.9 44 10-53 36-79 (86)
11 1aoc_A Coagulogen; coagulation 22.0 71 0.0024 22.5 2.9 14 53-66 41-56 (175)
12 3u5c_Q RP61R, 40S ribosomal pr 21.7 29 0.00099 23.4 0.9 18 50-67 26-43 (143)
13 1wgy_A RAP guanine nucleotide 21.7 24 0.00082 22.8 0.4 16 53-69 75-90 (104)
14 3iz6_I 40S ribosomal protein S 21.3 33 0.0011 23.4 1.1 20 49-68 31-50 (149)
No 1
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.3e-14 Score=99.11 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCc-cccccc-cccccCCcccc
Q 035110 11 EPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGT-VQMNGR-ELFLHEPWVFD 69 (73)
Q Consensus 11 ~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~-~~MsGR-ElF~~~P~lfd 69 (73)
++|.||||+++|+.||++|.+++++. .++.+++..++|+ +.+||+ +.|.|+|+..+
T Consensus 32 ~~nlTpVT~EtF~~WKk~k~~ek~~~---~~~~~~kk~~tGRei~~~g~~~~~~f~~d~~~ 89 (142)
T 4a9a_C 32 KSKLTPITIANFAQWKKDHVIAKINA---EKKLSSKRKPTGREIILKMSAENKSFETDNAD 89 (142)
T ss_dssp GGGCCCCCHHHHHHHHHHHHHHHHHH---HHHHHTTSCCCHHHHHHHHHHC----------
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHhcccccccccccccc
Confidence 45799999999999999999999874 4444445557897 999998 99999998875
No 2
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=81.29 E-value=1.2 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=29.5
Q ss_pred CccccCHHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHhhhCcccccccccccc
Q 035110 13 RGKSISQAQFVSWKRQKDA--------------DASARKEEAARKRAEDIAAGTVQMNGRELFLH 63 (73)
Q Consensus 13 ~~T~ITle~Fl~WKkrK~~--------------Ek~ak~ae~~~kr~~d~~AG~~~MsGRElF~~ 63 (73)
+...||||.|+.=.+.|.- =|..|..+-....++.-+ +-.++||+||+.
T Consensus 13 ~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~~--kk~~tGRei~~~ 75 (142)
T 4a9a_C 13 KQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLSS--KRKPTGREIILK 75 (142)
T ss_dssp SCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCCCHHHHHHH
T ss_pred cCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHh
Confidence 4568999999977666551 123333333333333323 334899999985
No 3
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=41.70 E-value=16 Score=18.86 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHhhHHH
Q 035110 17 ISQAQFVSWKRQKDAD 32 (73)
Q Consensus 17 ITle~Fl~WKkrK~~E 32 (73)
+-+|-|.+||++|.++
T Consensus 7 LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 7 LIQEYFRKFKKRKEQX 22 (26)
T ss_pred hHHHHHHHHHHhHHhh
Confidence 4578899999998665
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=40.68 E-value=9 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.612 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhHHH
Q 035110 19 QAQFVSWKRQKDAD 32 (73)
Q Consensus 19 le~Fl~WKkrK~~E 32 (73)
|-...+|-++|+++
T Consensus 13 LP~liSWiK~kr~~ 26 (26)
T 3qrx_B 13 LPALISWIKRKRQQ 26 (26)
T ss_pred chHHHHHHHHHhcC
Confidence 44678999999874
No 5
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=38.95 E-value=19 Score=26.65 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 035110 24 SWKRQKDADASARKEEAARKRA 45 (73)
Q Consensus 24 ~WKkrK~~Ek~ak~ae~~~kr~ 45 (73)
-|...|++|++++.+++++.|+
T Consensus 243 tw~~~k~~Ek~~~~~~~~~~~~ 264 (265)
T 3pow_A 243 TWGVTKAAEKQMKDKQDEEQRL 264 (265)
T ss_dssp THHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 4999999999998777776664
No 6
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=37.06 E-value=68 Score=19.29 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=22.2
Q ss_pred ccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 035110 16 SISQAQFVSWKRQKDADASARKEEAARKRAEDI 48 (73)
Q Consensus 16 ~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~ 48 (73)
..-++..-.|+.+.+.+-..+-+..++++++=+
T Consensus 5 ~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~ 37 (70)
T 1xi4_J 5 QSEPESIRKWREEQTERLEALDANSRKQEAEWK 37 (70)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345678899999887766666555555555543
No 7
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=32.66 E-value=24 Score=21.95 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCccccccccccc
Q 035110 11 EPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTVQMNGRELFL 62 (73)
Q Consensus 11 ~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~~~MsGRElF~ 62 (73)
.|...=|+++.|-++...-.--+....++.-.+-.+++++|++. |.-|||.
T Consensus 41 ~~~aVl~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~-s~eev~~ 91 (108)
T 3g5o_A 41 APAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTY-GEDEIRA 91 (108)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEE-CHHHHHH
T ss_pred CCcEEEecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCc-CHHHHHH
Confidence 34566689999999876421111111222333334567889863 7777764
No 8
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=26.77 E-value=29 Score=17.89 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=9.1
Q ss_pred CCCCccccCHHHHHH
Q 035110 10 EEPRGKSISQAQFVS 24 (73)
Q Consensus 10 ~~p~~T~ITle~Fl~ 24 (73)
++|..+. ||++|.+
T Consensus 4 ~R~~g~~-TLesFFK 17 (26)
T 2zvk_U 4 PRPEGMQ-TLESFFK 17 (26)
T ss_pred CCccccc-cHHHHhc
Confidence 3444444 9999974
No 9
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=26.52 E-value=13 Score=19.15 Aligned_cols=10 Identities=70% Similarity=1.165 Sum_probs=6.1
Q ss_pred cccccccccCCccccc
Q 035110 55 MNGRELFLHEPWVFDN 70 (73)
Q Consensus 55 MsGRElF~~~P~lfdd 70 (73)
|||| |+||..
T Consensus 1 mngr------psvfts 10 (26)
T 2xl1_A 1 MNGR------PSVFTS 10 (26)
T ss_pred CCCC------Cceeec
Confidence 6776 566643
No 10
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=25.71 E-value=1e+02 Score=17.70 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=26.6
Q ss_pred CCCCccccCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhCcc
Q 035110 10 EEPRGKSISQAQFVSWKRQKDADASARKEEAARKRAEDIAAGTV 53 (73)
Q Consensus 10 ~~p~~T~ITle~Fl~WKkrK~~Ek~ak~ae~~~kr~~d~~AG~~ 53 (73)
..|..-=|+.+.|.+|...-.--+....++.-.+-.+++++|++
T Consensus 36 g~~~avlvs~e~y~~l~e~l~ll~~p~~~~~L~~~~~~~~~G~~ 79 (86)
T 2a6q_A 36 NGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKG 79 (86)
T ss_dssp TSCEEEEEEHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTCC
T ss_pred CCccEEEEcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCC
Confidence 34556678999999988753332222223334444567888874
No 11
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=21.97 E-value=71 Score=22.47 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=9.7
Q ss_pred cccccc--cccccCCc
Q 035110 53 VQMNGR--ELFLHEPW 66 (73)
Q Consensus 53 ~~MsGR--ElF~~~P~ 66 (73)
.++||| .||.++|-
T Consensus 41 ~~vsgrgfs~fs~hpv 56 (175)
T 1aoc_A 41 SGVSGRGFSIFSHHPV 56 (175)
T ss_dssp TCSSTTSGGGTTTSHH
T ss_pred cCccccceeeecCChh
Confidence 467777 57888873
No 12
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=21.75 E-value=29 Score=23.44 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.1
Q ss_pred hCccccccccccccCCcc
Q 035110 50 AGTVQMNGRELFLHEPWV 67 (73)
Q Consensus 50 AG~~~MsGRElF~~~P~l 67 (73)
.|.+.+|||.|-.|.|.+
T Consensus 26 ~G~i~VNg~~l~~y~~~~ 43 (143)
T 3u5c_Q 26 KGLIKVNGSPITLVEPEI 43 (143)
T ss_dssp SCCEEETTEETTTCSSCS
T ss_pred ceEEEECCCcHHHHChHH
Confidence 567999999999988864
No 13
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.67 E-value=24 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.3
Q ss_pred cccccccccccCCcccc
Q 035110 53 VQMNGRELFLHEPWVFD 69 (73)
Q Consensus 53 ~~MsGRElF~~~P~lfd 69 (73)
+.+||| ||...++.++
T Consensus 75 L~~NgR-Lfvc~kd~~d 90 (104)
T 1wgy_A 75 LEASGR-IYVYRKDLAD 90 (104)
T ss_dssp SCSSCE-EEEEECCSSS
T ss_pred ccccce-EEEeehHhcc
Confidence 558888 8888887765
No 14
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.30 E-value=33 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.0
Q ss_pred hhCccccccccccccCCccc
Q 035110 49 AAGTVQMNGRELFLHEPWVF 68 (73)
Q Consensus 49 ~AG~~~MsGRElF~~~P~lf 68 (73)
..|++.+|||.|-.|.|.+.
T Consensus 31 G~G~i~VNg~~l~~y~~~~~ 50 (149)
T 3iz6_I 31 GRGLIKVNGVPIELIRPEML 50 (149)
T ss_dssp CCCSSSEECCCCCCSSCCEE
T ss_pred CcEEEEECCCcHHHHChHHH
Confidence 35569999999999988643
Done!