Query 035110
Match_columns 73
No_of_seqs 48 out of 50
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzja2 c.95.1.2 (A:184-336) P 40.5 2 0.00014 26.5 -0.7 11 53-63 35-45 (153)
2 d1u6ea2 c.95.1.2 (A:175-317) K 39.0 2.2 0.00016 26.2 -0.7 12 53-64 35-46 (148)
3 d1wxxa1 b.122.1.9 (A:1-64) Hyp 37.6 2.9 0.00021 23.2 -0.2 13 60-72 13-25 (64)
4 d1ub7a2 c.95.1.2 (A:174-322) K 31.5 3.6 0.00026 24.9 -0.6 13 51-63 32-44 (149)
5 d1xiwa_ b.1.1.4 (A:) CD3 epsil 31.4 5.8 0.00043 24.1 0.4 20 52-71 5-24 (91)
6 d1hnja2 c.95.1.2 (A:175-317) K 29.7 4 0.00029 24.6 -0.6 11 53-63 31-41 (143)
7 d1vjja1 b.1.18.9 (A:1-140) Tra 25.4 8.5 0.00062 24.0 0.4 8 61-68 132-139 (140)
8 d2pkgc1 g.92.1.1 (C:91-170) Sm 24.4 19 0.0014 21.2 1.9 14 14-27 59-72 (80)
9 d1wgya_ d.15.1.5 (A:) Rap guan 22.4 11 0.00078 23.1 0.4 16 53-69 75-90 (104)
10 d1eg3a2 a.39.1.7 (A:210-306) D 20.7 23 0.0017 21.1 1.8 14 14-27 64-77 (97)
No 1
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}
Probab=40.52 E-value=2 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=9.9
Q ss_pred ccccccccccc
Q 035110 53 VQMNGRELFLH 63 (73)
Q Consensus 53 ~~MsGRElF~~ 63 (73)
+.|+||+||.|
T Consensus 35 ~~m~G~~v~~~ 45 (153)
T d1mzja2 35 LVMDGKRVFRW 45 (153)
T ss_dssp EEECHHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 78999999976
No 2
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=38.99 E-value=2.2 Score=26.20 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.3
Q ss_pred cccccccccccC
Q 035110 53 VQMNGRELFLHE 64 (73)
Q Consensus 53 ~~MsGRElF~~~ 64 (73)
+.|+||++|.|-
T Consensus 35 ~~m~G~~Vf~~a 46 (148)
T d1u6ea2 35 VRLEGPAVFRWA 46 (148)
T ss_dssp EEECHHHHHHHH
T ss_pred EEeecHHHHHHH
Confidence 799999999763
No 3
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=37.55 E-value=2.9 Score=23.23 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.4
Q ss_pred ccccCCcccccCC
Q 035110 60 LFLHEPWVFDNTH 72 (73)
Q Consensus 60 lF~~~P~lfdd~~ 72 (73)
|...+||+|.+.+
T Consensus 13 l~~gHPWVf~~~i 25 (64)
T d1wxxa1 13 LLSRHLWVFRRDV 25 (64)
T ss_dssp HHTTCCEECGGGE
T ss_pred hhcCCccchhhhh
Confidence 6677999998864
No 4
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Probab=31.45 E-value=3.6 Score=24.95 Aligned_cols=13 Identities=46% Similarity=0.766 Sum_probs=10.8
Q ss_pred Ccccccccccccc
Q 035110 51 GTVQMNGRELFLH 63 (73)
Q Consensus 51 G~~~MsGRElF~~ 63 (73)
..+.|+||++|.|
T Consensus 32 ~~~~M~G~~vf~~ 44 (149)
T d1ub7a2 32 NRLYMNGREVFKF 44 (149)
T ss_dssp SSCEECHHHHHHH
T ss_pred CcEEEccHHHHHH
Confidence 3588999999975
No 5
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.35 E-value=5.8 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.4
Q ss_pred ccccccccccccCCcccccC
Q 035110 52 TVQMNGRELFLHEPWVFDNT 71 (73)
Q Consensus 52 ~~~MsGRElF~~~P~lfdd~ 71 (73)
+|.|||..|++-.|.-+.++
T Consensus 5 ~VsISGTtV~LTCP~~~~~~ 24 (91)
T d1xiwa_ 5 KVSISGTTVILTCPQYPGSE 24 (91)
T ss_dssp EEEEETTEEEEECSSCTTSC
T ss_pred EEEEeCCEEEEECCCCCCCc
Confidence 48899999999999765554
No 6
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=29.70 E-value=4 Score=24.62 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=9.8
Q ss_pred ccccccccccc
Q 035110 53 VQMNGRELFLH 63 (73)
Q Consensus 53 ~~MsGRElF~~ 63 (73)
+.|+||++|.|
T Consensus 31 ~~m~G~~vf~~ 41 (143)
T d1hnja2 31 LTMAGNEVFKV 41 (143)
T ss_dssp CEECHHHHHHH
T ss_pred EEEEChHHhhh
Confidence 78999999976
No 7
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=25.41 E-value=8.5 Score=23.97 Aligned_cols=8 Identities=38% Similarity=1.136 Sum_probs=6.1
Q ss_pred cccCCccc
Q 035110 61 FLHEPWVF 68 (73)
Q Consensus 61 F~~~P~lf 68 (73)
-+|||||=
T Consensus 132 lLFNPWl~ 139 (140)
T d1vjja1 132 LLFNPWLN 139 (140)
T ss_dssp EECCTTST
T ss_pred EEECCCcC
Confidence 48899984
No 8
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]}
Probab=24.39 E-value=19 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=12.1
Q ss_pred ccccCHHHHHHHHH
Q 035110 14 GKSISQAQFVSWKR 27 (73)
Q Consensus 14 ~T~ITle~Fl~WKk 27 (73)
..|+|.++|..|++
T Consensus 59 G~~~t~~~f~~W~~ 72 (80)
T d2pkgc1 59 GLDLCEGTLLLWCD 72 (80)
T ss_dssp TCCSSHHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 46899999999986
No 9
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40 E-value=11 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.1
Q ss_pred cccccccccccCCcccc
Q 035110 53 VQMNGRELFLHEPWVFD 69 (73)
Q Consensus 53 ~~MsGRElF~~~P~lfd 69 (73)
+.+||| ||...++.+|
T Consensus 75 L~lN~r-LFvc~~d~~d 90 (104)
T d1wgya_ 75 LEASGR-IYVYRKDLAD 90 (104)
T ss_dssp SCSSCE-EEEEECCSSS
T ss_pred eeecce-EEEechhhcc
Confidence 457888 8888887765
No 10
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.66 E-value=23 Score=21.10 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=11.8
Q ss_pred ccccCHHHHHHHHH
Q 035110 14 GKSISQAQFVSWKR 27 (73)
Q Consensus 14 ~T~ITle~Fl~WKk 27 (73)
...|+++.|+.|-+
T Consensus 64 ~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 64 KPEIEAALFLDWMR 77 (97)
T ss_dssp CSCBCHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 45699999999965
Done!